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  • BioExcel 1st Annual Meeting: “Advanced Simulations for Biomolecular Research” SIG @ ECCB 2016

    4 September 2016

    The Hague, Netherlands

    BioExcel 1st Annual Meeting: “Advanced Simulations for Biomolecular Research” SIG @ ECCB 2016 https://tess.elixir-europe.org/events/bioexcel-1st-annual-meeting-advanced-simulations-for-biomolecular-research-sig-eccb-2016 The BioExcel Annual Meeting will take place as a satellite event during ECCB 2016 on 4th September in the Hague. SIG BioExcel is a major venue for knowledge exchange and networking for the computational biomolecular research community. It brings together stakeholders of 1) core applications that are supported by the center – HADDOCK (integrative modelling), GROMACS (molecular dynamics simulations) and CPMD (hybrid QM/MM methods) and 2) worklow environments and platforms for data integration and analysis such as Galaxy, Taverna, Open PHACTS, COMPSs and Copernicus. 2016-09-04 09:00:00 UTC 2016-09-04 17:00:00 UTC BioExcel World Forum, The Hague, Netherlands World Forum The Hague Netherlands 2517 JW [] [] [] [] [] []
  • GROMACS hackathon 2016

    17 - 19 October 2016

    Barcelona, Spain

    GROMACS hackathon 2016 https://tess.elixir-europe.org/events/gromacs-hackathon-2016 Get together with core GROMACS developers from around the world to hack together on code! Bring your own laptop and coding problem – new integrator, fancy free-energy method, cool analysis tool, automated parameterizer, workflow implementation, meta-dynamics driver, tricky bug to fix, API design question, etc. Be ready to ask and answer questions with the gurus, and come away with new code running, progressed or well planned! 2016-10-17 09:00:00 UTC 2016-10-19 17:00:00 UTC BioExcel Barcelona Supercomputing Center, Barcelona, Spain Barcelona Supercomputing Center Barcelona Spain [] [] [] [] [] []
  • BioExcel: workflow training for computational biomolecular research

    20 - 21 October 2016

    Barcelona, Spain

    BioExcel: workflow training for computational biomolecular research https://tess.elixir-europe.org/events/bioexcel-workflow-training-for-computational-biomolecular-research The purpose of this workshop is to (1) provide an overview of the most commonly used workflow managers in the computational biomolecular field, both in a theoretical and practical way, with hands-on practice sessions. (2) Find out about how BioExcel – Europe’s new Centre of Excellence for Computational BioMolecular Research – will help you to develop and run your own pipelines using these tools and introduce you to the BioExcel Workflows Interest Group. (3) Together with experts on the different workflow managers, identify the best approach for your particular workflow problem in a “Bring Your Own Workflow” session 2016-10-20 09:00:00 UTC 2016-10-21 17:00:00 UTC BioExcel Barcelona Supercomputing Center, Barcelona, Spain Barcelona Supercomputing Center Barcelona Spain [] [] [] [] [] []
  • Large-scale analytical workflows on the cloud using Galaxy and Globus

    16 November 2016

    Large-scale analytical workflows on the cloud using Galaxy and Globus https://tess.elixir-europe.org/events/large-scale-analytical-workflows-on-the-cloud-using-galaxy-and-globus We would like to invite you to attend the 8th webinar in BioExcel’s webinar series on computational methods and applications for biomolecular research, which will take place on 16th November 2016: Presenter: Ravi Madduri (introduction by Stian Soiland-Reyes) When: Wed 16th November 2016 16:00 CET (2016-11-16 15:00 UTC) Registration: Free In this BioExcel webinar we are delighted to have Ravi Madduri from Argonne National Laboratory and University of Chicago present Globus Genomics, a system developed for rapid analysis of large quantities of next-generation sequencing (NGS) genomic data, combining Galaxy workflows with cloud technologies like Amazon EC2 and Globus File Transfer. This system achieves a high degree of end-to-end automation that encompasses every stage of data analysis including initial data retrieval from remote sequencing centers or storage (via the Globus file transfer system); specification, configuration, and reuse of multi-step processing pipelines (via the Galaxy workflow system); creation of custom Amazon Machine Images and on-demand resource acquisition via a specialized elastic provisioner (on Amazon EC2); and efficient scheduling of these pipelines over many processors (via the HTCondor scheduler). The system allows biomedical researchers to perform rapid analysis of large NGS datasets in a fully automated manner, without software installation or a need for any local computing infrastructure. Ravi’s work is part of the BD2K center Big Data for Discovery Science, building infrastructure for reproducible workflows using minids (minimal viable identifiers), analyzing data at scale using identified Docker containers, publish results in to Globus Publication services thus providing an end-to-end framework for reproducible research. In this BioExcel webinar, Ravi will present Globus Genomics and the technologies used to achieve large-scale analytical Galaxy workflows on the cloud. We think this will be of interest not just for the genomics community, but for any scientific workflow users who need to consider distributed deployments, data management and scalability. 2016-11-16 15:00:00 UTC 2016-11-16 16:00:00 UTC BioExcel Whole genome sequencing High-throughput sequencing Genomics Workflows University of ManchesterUniversity of ChicagoArgonne National Laboratory Please register at https://attendee.gotowebinar.com/register/5808939110698431491. You will then receive an email with details of how you can connect to the webinar. [] bioinformaticianssoftware engineersGalaxy usersCloud users workshops_and_courses first_come_first_served CloudGalaxyGlobusNGSNext generation sequencing data analysis
  • BioExcel/PRACE Spring School 2017 – HPC for Life Sciences

    10 - 13 April 2017

    Stockholm, Sweden

    BioExcel/PRACE Spring School 2017 – HPC for Life Sciences https://tess.elixir-europe.org/events/bioexcel-prace-spring-school-2017-hpc-for-life-sciences BioExcel Center of Excellence is bringing together for the first time the main developers of four of the major and most popular codes for molecular modelling and simulations – GROMACS, AMBER, NAMD and VMD. This is a great opportunity for novice and experienced users to learn from the very authors of the software. The 2017 Spring School is organized jointly with PRACE, the main HPC resource provider in Europe. 2017-04-10 08:30:00 UTC 2017-04-13 17:00:00 UTC BioExcel KTH Main Campus, Stockholm, Sweden KTH Main Campus Stockholm Stockholm Sweden SE-100 44 Molecular modelling Data visualisation Simulation experiment [] Vera Matser - matser@ebi.ac.uk PRACE [] 60 workshops_and_courses first_come_first_served []
  • Foundation skills for HPC in computational biomolecular research

    3 - 7 July 2017

    Hinxton, United Kingdom

    Foundation skills for HPC in computational biomolecular research https://tess.elixir-europe.org/events/foundation-skills-for-hpc-in-computational-biomolecular-research This 5-day BioExcel Summer School will use project-based learning to empower life scientists to get the most out of using computers. Using example problems and challenges that life-scientists will come across in their day-to-day work, e.g. obtaining data, installing software, cleaning data, analysing data, this course will help participants gain the foundational computational skills needed to move into the domain of high-end computing. 2017-07-03 16:33:00 UTC 2017-07-07 14:00:00 UTC BioExcel EMBL-EBI South Building and ELIXIR Hub, Hinxton, United Kingdom EMBL-EBI South Building and ELIXIR Hub Hinxton Cambridgeshire United Kingdom Computational biology EMBL-EBI Vera Matser - matser@ebi.ac.uk [] [] workshops_and_courses [] []
  • Building pharmacological workflow blocks for virtual screening (BioExcel and OpenPHACTS)

    17 July 2017

    Building pharmacological workflow blocks for virtual screening (BioExcel and OpenPHACTS) https://tess.elixir-europe.org/events/building-pharmacological-workflow-blocks-for-virtual-screening BioExcel’s webinar series continues with Nick Lynch, who will introduce Open PHACTS, an integrated pharmacological data platform and [BioExcel strategic partner](http://bioexcel.eu/partnership-between-bioexcel-and-open-phacts-foundation/). Nick is joined by Stian Soiland-Reyes and Adam Hospital who will explain in details how BioExcel is building a Virtual Screening workflow combining Open PHACTS with the BioExcel-supported tools for biomolecular simulation and modelling. The [Open PHACTS Discovery Platform](http://www.openphacts.org/) brings together vast amounts of linked data in a single integrated, open infrastructure providing a platform for researchers to access and query publicly-available pharmacological data. The platform integrates major open data sources (e.g. ChEMBL, UniProt, WikiPathways, SureChEMBL, DrugBank, Disgenet and their associated Chemistry) on compounds, patents, diseases, targets and pathways; linked by identifiers, semantic and structural chemistry information, re-exposed as a collection of unified web APIs, workflow components plus tool integrations. The platform is maintained by the [Open PHACTS Foundation](), which is supported by members from biopharmaceutical industry and Research Organisations with an active developer and user community. [BioExcel](http://bioexcel.eu/) is an European Centre of Excellence that support academia and industry in the use of high-end computing in biomolecular research. Part of BioExcel’s roadmap for workflows is to develop Workflow Blocks for biomolecular simulation and modelling, which includes Open PHACTS as a data service. Such blocks, including the Open PHACTS platform, can be deployed in private or public cloud environments, and used to build portable pipelines. BioExcel is currently developing a series of [pilot use cases](http://bioexcel.eu/research/pilot-use-cases/), including a Virtual Screening workflow using Open PHACTS. In this webinar, **Nick Lynch** (Open PHACTS Foundation), **Stian Soiland-Reyes** (The University of Manchester) and **Adam Hospital** (IRB Barcelona) will present the Open PHACTS platform and how it will be used with BioExcel workflow blocks to build a virtual screening pipeline. [BioExcel webinars](http://bioexcel.eu/category/webinar/) include an audience Q&A session during which attendees can ask questions and make suggestions. Please [**register** at https://attendee.gotowebinar.com/register/295609582301212161](https://attendee.gotowebinar.com/register/295609582301212161) - you will then receive an email with details of how you can connect to the webinar. 2017-07-17 15:00:00 UTC 2017-07-17 16:00:00 UTC BioExcel Molecular modelling Workflows Pharmacology University of Manchester Stian Soiland-Reyes, The University of Manchester [] [] workshops_and_courses registration_of_interest []
  • Quality Assurance and Quality Control in Metabolomics

    12 - 13 October 2017

    Birmingham, United Kingdom

    Elixir node event
    Quality Assurance and Quality Control in Metabolomics https://tess.elixir-europe.org/events/quality-assurance-and-quality-control-in-metabolomics-ea29a17f-d41e-4488-808b-b137b7c82b93 This 2-day course will provide a comprehensive theoretical overview and hands-on experience of the application of quality assurance (QA) and quality control (QC) in metabolomics. It will include both theoretical and practical components to provide hands-on experience of using the mass spectrometer (a maximum of 4 people working on the instrument in a session) and the analysis of data. Experts who have developed the application of QA and QC procedures within the field will lead the course. 2017-10-12 09:00:00 UTC 2017-10-13 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to DNA-seq NGS Analysis Workshop, November 2017

    20 - 21 November 2017

    Leicester, United Kingdom

    Elixir node event
    Introduction to DNA-seq NGS Analysis Workshop, November 2017 https://tess.elixir-europe.org/events/introduction-to-dna-seq-ngs-analysis-workshop-november-2017 This two day course serves as the first in a larger two-part course in conjunction with our Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop in December 2017, as well as a standalone introduction to DNA-seq. Attendees will receive an introduction to next generation sequencing (NGS) platforms, data analysis and tools for data quality control, read alignment (mapping) and refinement using DNA-seq data. The course will conclude with a basic introduction to variant calling as a lead-in to the December workshop. 2017-11-20 09:00:00 UTC 2017-11-21 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Genetics University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] DNA-seqbioinformatics
  • Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017

    4 - 5 December 2017

    Leicester, United Kingdom

    Elixir node event
    Exome Variants, Copy Number Calling, Variant Annotation and Reporting workshop, December 2017 https://tess.elixir-europe.org/events/exome-variants-copy-number-calling-variant-annotation-and-reporting-workshop-december-2017 This course is aimed at clinicians and wet-lab biologists who are involved in research projects requiring the analysis of exome data, interpretation of sequence variation identified during genomic analyses, and preparing accurate sequence variation descriptions for publication, clinical reporting and data basing. Attendees will receive an introduction to calling variants and copy number alterations from exome sequencing data alignment files, reference sequences, variation nomenclature, variant annotation, variant effect prediction, and clinical and publication reporting recommendations. This course serves as the second in a two-part workshop. The first part, an Introduction to DNA-seq, will be held in November 2017. While attendance of the November workshop is not a pre-requisite, familiarity with the topics it covers will be necessary. 2017-12-04 09:00:00 UTC 2017-12-05 17:00:00 UTC University of Leicester BBASH College Court, Leicester, United Kingdom College Court Leicester Leicestershire United Kingdom LE2 3UF Bioinformatics Exome sequencing University of Leicester [] AcademicspostdocsPhD studentsClinical Scientists workshops_and_courses [] []
  • CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF

    28 February 2018

    CWLEXEC: Run Common Workflow Language on HPC with IBM Spectrum LSF https://tess.elixir-europe.org/events/cwlexec-a-new-open-source-tool-to-run-cwl-workflows-on-lsf The [Common Workflow Language (CWL)](http://www.commonwl.org/) is a community-led specification for describing analysis _workflows_ and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and _high performance computing_ (HPC) environments. [IBM Spectrum LSF](https://www.ibm.com/us-en/marketplace/hpc-workload-management) (formerly IBM Platform LSF) is a complete workload management solution for demanding HPC environments. Featuring intelligent, policy-driven scheduling, it helps organizations accelerate research and design while controlling costs through superior resource utilization. Recognizing the popularity of CWL among LSF users, we introduce a new open source project **CWLEXEC** to support running CWL workflows on LSF. The project will feature smooth integration with LSF with high efficiency and scalability, self-healing of workflows, support user-specified submission options while keeping CWL definitions portable, and other benefits. * **Title**: CWLEXEC: A new open source tool to run CWL workflows on LSF * **Presenter:** Qingda Wang, Principal Architect, IBM Spectrum LSF Family Products and OEM * **Time**: 2018-02-28 14:00 GMT / 15:00 CET 2018-02-28 14:00:00 UTC 2018-02-28 15:00:00 UTC BioExcel Bioinformatics Genomics Workflows University of ManchesterBioExcel CoE Stian Soiland-Reyes http://ask.bioexcel.eu/ [] bioinformaticiansHPC users workshops_and_courses registration_of_interest WorkflowsCWLHPCLSF
  • NERC-MDIBL Environmental Genomics and Metabolomics 2018

    4 - 9 March 2018

    Birmingham, United Kingdom

    Elixir node event
    NERC-MDIBL Environmental Genomics and Metabolomics 2018 https://tess.elixir-europe.org/events/nerc-mdibl-environmental-genomics-and-metabolomics-2018 This NERC funded short course will provide a hands-on approach to guide genomics and metabolomics research applied to the environmental scientists. Participation in the course is open to everyone but priority is given to NERC-funded PhD students and early-career scientists. The course will include ~1.5 days generic environmental omics training and ~3.5 days specialized genomics or metabolomics training. Case studies using multi-omics data will be provided so that you gain practical experience of analyzing and interpreting multi-omics data. Distinguished visiting academics will provide keynote lectures on each day of the course to highlight environmental omics applictions that draw on the expertise of the guest faculty. 2018-03-04 09:00:00 UTC 2018-03-09 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT Genomics Metabolomics [] [] [] [] [] []
  • BioSimSpace – filling the gaps between molecular simulation codes

    27 June 2018

    BioSimSpace – filling the gaps between molecular simulation codes https://tess.elixir-europe.org/events/biosimspace-filling-the-gaps-between-molecular-simulation-codes [BioSimSpace](https://biosimspace.org) is a flagship software project from the [CCP-BioSim](https://ccpbiosim.ac.uk) and [HEC-BioSim](https://hecbiosim.ac.uk) biomolecular modelling communities. The project aims to make it easier for researchers to develop, share and re-use biomolecular simulation workflow nodes. The software problem in our community is that we have lots of different pieces of software that are all incompatible and are not interoperable. This forces the community to hand-write small scripts for converting between different file formats, or to generate different software input files. The resulting scripts are specific for the software and task performed, leading to the community generating lots of bespoke and brittle workflows. BioSimSpace solves this problem by providing an **interoperability layer** between the major molecular simulation packages. In effect, BioSimSpace provides the shims that fill in the gaps between codes. BioSimSpace Python scripts can be run from the command line, used as workflow nodes in packages such as Knime, or run on the cloud as Jupyter notebooks. In this talk, we will show how BioSimSpace has been implemented, will talk about its capabilities and our future plans, and will demonstrate some BioSimSpace workflow nodes running on the cloud. 2018-06-27 15:00:00 UTC 2018-06-27 16:00:00 UTC BioExcel Molecular modelling Molecular dynamics Workflows University of Manchester [] IntermediateBeginners [] [] GROMACSPythonKNIMEJupyter notebook
  • Metabolomics: Understanding Metabolism in the 21st Century

    23 July - 17 August 2018

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics: Understanding Metabolism in the 21st Century https://tess.elixir-europe.org/events/metabolomics-understanding-metabolism-in-the-21st-century Metabolomics is an emerging field that aims to measure the complement of metabolites (the metabolome) in living organisms. The metabolome represents the downstream effect of an organism’s genome and its interaction with the environment. Metabolomics has a wide application area across the medical and biological sciences. The course provides an introduction to metabolomics, describes the tools and techniques we use to study the metabolome and explains why we want to study it. By the end of the course you will understand how metabolomics can revolutionise our understanding of metabolism. 2018-07-23 09:00:00 UTC 2018-08-17 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to Metabolomics for the Microbiologist

    30 January - 1 February 2019

    Birmingham, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Microbiologist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-microbiologist This three-day course will introduce the attendees in how untargeted metabolomics can be applied to study microbial systems in academic and industrial research. The course will provide an overview of the metabolomics pipeline from experimental design to sample preparation and data acquisition to data analysis/interpretation. The course will be led by experts in the field of metabolomics and will include lectures, hands-on laboratory sessions in sample preparation and data acquisition and computer workshops focused on data processing and data analysis. 2019-01-30 09:00:00 UTC 2019-02-01 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to Metabolomics for the Environmental Scientist

    28 February - 1 March 2019

    Birmingham, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Environmental Scientist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-environmental-scientist This 2-day NERC-funded Advanced Training Short Course will provide environmental scientists with an overview of the metabolomics pipeline. The course is intended for environmental scientist with little or no previous experience of metabolomics and who are interested to discover how this relatively new and powerful approach could be integrated into their research. Experts working in the NERC Metabolomics facility-NBAF-Birmingham will teach the course. 2019-02-28 09:00:00 UTC 2019-03-01 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to Metabolomics for the Clinical Scientist

    11 March 2019

    Birmingham, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Clinical Scientist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-clinical-scientist The 1-day course in partnership with the Phenome Centre Birmingham will provide clinicians with an overview of the metabolomics pipeline highlighting the benefits of this technique to the medical field and an introduction to the Phenome Centre Birmingham and the MRC-NIHR National Phenome Centre. The course will provide a suitable introduction to metabolomics prior to taking additional training courses at either the Birmingham Metabolomics Training Centre or the Imperial International Phenome Training Centre. 2019-03-11 09:00:00 UTC 2019-03-11 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolomics Data Processing and Data Analysis

    18 March - 12 April 2019

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics Data Processing and Data Analysis https://tess.elixir-europe.org/events/metabolomics-data-processing-and-data-analysis This online course will explore the tools and approaches that are used to process and analyse metabolomics data, we will investigate the challenges that are typically encountered in the analysis of metabolomics data and provide solutions to overcome these problems. The course will be delivered using a combination of short videos, articles, discussions, and online workshops with step-by-step instructions and test data sets. 2019-03-18 09:00:00 UTC 2019-04-12 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolomics with the Q Exactive

    1 - 3 April 2019

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics with the Q Exactive https://tess.elixir-europe.org/events/metabolomics-with-the-q-exactive This 3-day course will introduce you to using the Q Exactive mass spectrometer in your metabolomics investigations. The course will be led by experts in the field of metabolomics and include lectures, laboratory sessions and computer workshops to provide a detailed overview of the metabolomics pipeline applying the Q Exactive mass spectrometer. 2019-04-01 09:00:00 UTC 2019-04-03 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolite identification with the Q Exactive and LTQ Orbitrap Elite

    4 - 5 April 2019

    Birmingham, United Kingdom

    Elixir node event
    Metabolite identification with the Q Exactive and LTQ Orbitrap Elite https://tess.elixir-europe.org/events/metabolite-identification-with-the-q-exactive-and-ltq-orbitrap This 2-day course will provide a hands-on approach to teach the attendees about the latest techniques and tools available to perform metabolite identification in non-targeted metabolomics studies. The course will be led by experts working within the fields of metabolomics and chemical analysis and will include a significant proportion of hands-on experience of using mass spectrometers, software tools and databases. A maximum of four people will be working on each mass spectrometer in a session. We will apply these tools on the Q Exactive and LTQ-Orbitrap family of mass spectrometers. 2019-04-04 09:00:00 UTC 2019-04-05 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolomics: Understanding Metabolism in the 21st Century

    13 May - 7 June 2019

    Edgbaston, United Kingdom

    Elixir node event
    Metabolomics: Understanding Metabolism in the 21st Century https://tess.elixir-europe.org/events/metabolomics-understanding-metabolism-in-the-21st-century-8c9cebe4-268d-4e19-9073-3a9d99e51df5 This online course explores metabolomics, an emerging field that aims to measure the complement of metabolites (the metabolome) in living organisms. The metabolome represents the downstream effect of an organism's... 2019-05-13 09:00:00 UTC 2019-06-07 23:59:00 UTC Online, Edgbaston, United Kingdom Online Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • Multiple biofluid and tissue types, from sample preparation to analysis strategies for metabolomics

    25 - 27 September 2019

    Birmingham, United Kingdom

    Elixir node event
    Multiple biofluid and tissue types, from sample preparation to analysis strategies for metabolomics https://tess.elixir-europe.org/events/multiple-biofluid-and-tissue-types-from-sample-preparation-to-analysis-strategies-for-metabolomics This 3-day course will provide a comprehensive theoretical overview and hands-on training for the range of methods applied for sample preparation of complex biological samples for analysis applying LC-MS analysis. The course will be led by experts in the field to illustrate the different approaches that are available to analyse a range of biological samples and apply complementary liquid chromatography approaches to maximise the coverage of the metabolome. The course will be taught by experts in metabolomics who have experience of the analysis of microbial, plant and mammalian samples. 2019-09-25 09:00:00 UTC 2019-09-27 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics

    25 - 27 September 2019

    Edgbaston, United Kingdom

    Elixir node event
    Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics https://tess.elixir-europe.org/events/multiple-biofluid-and-tissue-types-from-sample-preparation-to-analysis-strategies-for-metabolomics-243914d0-27d4-46a1-bc95-4e513ae0fbb3 This 3-day course provides a theoretical overview and hands-on training to apply multiple sample preparation and UPLC-MS methods to characterise the metabolomes of complex biological samples using the mass spec... 2019-09-25 09:00:00 UTC 2019-09-27 15:30:00 UTC School of Biosciences - University of Birmingham, Edgbaston, United Kingdom School of Biosciences - University of Birmingham Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to Metabolomics for the Microbiologist

    9 - 11 October 2019

    Edgbaston, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Microbiologist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-microbiologist-610da160-7cff-4be4-8e8d-5fdb5dda50c5 This three-day course introduces how untargeted metabolomics can be applied to study microbial systems in academic and industrial research. The course provides an overview of the metabolomics pipeline, experimental... 2019-10-09 09:15:00 UTC 2019-10-11 16:00:00 UTC School of Biosciences - University of Birmingham, Edgbaston, United Kingdom School of Biosciences - University of Birmingham Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolomics Data Processing and Data Analysis

    21 October - 15 November 2019

    Edgbaston, United Kingdom

    Elixir node event
    Metabolomics Data Processing and Data Analysis https://tess.elixir-europe.org/events/metabolomics-data-processing-and-data-analysis-e8f98f61-45aa-432d-b65a-b94867d6886d This online course explores the tools and approaches that are used to process and analyse metabolomics data. You will investigate the challenges that are typically encountered in the analysis of metabolomics data... 2019-10-21 09:00:00 UTC 2019-11-15 23:59:00 UTC Online, Edgbaston, United Kingdom Online Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to Metabolomics for the Clinical Scientist

    25 October 2019

    Edgbaston, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Clinical Scientist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-clinical-scientist-b43defc4-bb00-4b8e-9a15-3a2f7e634bc0 This 1-day course in partnership with the Phenome Centre Birmingham provides clinicians with an overview of the metabolomics pipeline, highlighting the benefits of this technique to the medical field. 2019-10-25 09:45:00 UTC 2019-10-25 16:15:00 UTC School of Biosciences - University of Birmingham, Edgbaston, United Kingdom School of Biosciences - University of Birmingham Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolomics with the Q Exactive

    4 - 6 November 2019

    Edgbaston, United Kingdom

    Elixir node event
    Metabolomics with the Q Exactive https://tess.elixir-europe.org/events/metabolomics-with-the-q-exactive-b48060e4-345d-43be-be3f-ea24fb58b55c This 3-day course introduces you to using the Q Exactive mass spectrometer in your metabolomics investigations. The course is led by experts in the field of metabolomics and includes lectures, laboratory sessions... 2019-11-04 09:00:00 UTC 2019-11-06 15:45:00 UTC School of Biosciences - University of Birmingham, Edgbaston, United Kingdom School of Biosciences - University of Birmingham Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolite Identification with the Q Exactive and LTQ Orbitrap Elite

    7 - 8 November 2019

    Edgbaston, United Kingdom

    Elixir node event
    Metabolite Identification with the Q Exactive and LTQ Orbitrap Elite https://tess.elixir-europe.org/events/metabolite-identification-with-the-q-exactive-and-ltq-orbitrap-elite This 2-day course provides a hands-on approach to teach attendees about the latest techniques and tools available to perform metabolite identification in non-targeted metabolomics studies. The course is led by experts... 2019-11-07 09:00:00 UTC 2019-11-08 17:30:00 UTC School of Biosciences - University of Birmingham, Edgbaston, United Kingdom School of Biosciences - University of Birmingham Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
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