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234 events found

Content provider: Birmingham Metabolomics Tra...  or NBIS  or EMBL-ABR 

  • RNA-seq, 1 hp

    13 - 16 March 2017

    Elixir node event
    RNA-seq, 1 hp https://tess.elixir-europe.org/events/rna-seq-1-hp-bb9f6240-741a-4ea8-aa48-deda7e1198b4 Course content This course will cover both theoretical and hands-on exposure to current topics in RNA-seq analysis. Lectures from experts in RNA-seq and biostatistics will cover a range of cutting-edge issues in RNA quality control, transcript assembly in model and non-model organisms, differential expression analysis and downstream analysis using other types of data. An extensive case study in the computer lab will familiarize you with concepts of mapping, quality control of your RNA-seq data, de novo assembly, assembly using a reference, differential expression analysis and downstream enrichment analysis. Topics covered will include: Gene and isoform detection using short RNA-seq reads Gene and isoform detection using long RNA-seq reads Gene and isoform detection combining RNA-seq data with other data sources Quality assessment of RNA-seq data Differential expression analysis using RNA-seq data on multiple cells Downstream analysis after identifying differentially expressed genes. 2017-03-13 09:00:00 UTC 2017-03-16 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • R Programming Foundations for Life Scientists, 2 hp

    27 March - 1 April 2017

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp-56fa30d4-110b-45eb-a88c-682e65f58c51 Course content The course is addressed to life scientists with little or moderate experience in programming but enthusiastic about learning how to use R to make their work smoother and easier. The course covers fundamental concepts of programming and software design focusing on programming in R. We will go through various aspects of R scripting with some more attention paid to the parts useful for life scientists. After introductory lectures on good programming practices, basic software design theory and a brief overview of R, we will delve into programming. We start by learning how to use R as a simple calculator, what are variable types, how to use data structures, how to implement repeating actions with and without loops, how to take actions based on certain condition. We gradually proceed to loading data, importing data from common file formats, we do some basic matrix algebra; learn how to perform basic statistical tests and how to visualize results. We will also put stress on giving you tools to access help and information on R-related challenges and issues, we will spend some time on learning how to install external packages, how to find bugs and address common installation issues. We also mention some more advanced topics and tell you more about BioConductor that is an invaluable tool for a computational biologist. You will also learn how to document your work and how to generate automatic reports. We try to illustrate all these concepts with some real-life examples and interesting lab tasks. The course will be given by experienced computational biologists from SciLifeLab and Uppsala University. Dr. Marcin Kierczak responsible for the content of the course is an experienced R user/coder, who has previously developed R packages and has experience in teaching programming and R to different audiences. 2017-03-27 09:00:00 UTC 2017-04-01 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Introduction to Galaxy Workshop

    12 April 2017

    Saint Lucia, Australia

    Introduction to Galaxy Workshop https://tess.elixir-europe.org/events/introduction-to-galaxy-workshop 2017-04-12 14:00:00 UTC 2017-04-12 16:00:00 UTC University of Queensland Multi-media room, Queensland Bioscience Precinct, University of Queensland, Saint Lucia, Australia Multi-media room, Queensland Bioscience Precinct, University of Queensland Saint Lucia Brisbane City Australia Bioinformatics University of Queensland [] [] workshops_and_courses [] Galaxy
  • Introduction to Unix

    3 May 2017

    Carlton, Australia

    Introduction to Unix https://tess.elixir-europe.org/events/introduction-to-unix-8a2b302a-4c70-4949-9950-b31fcf2c2ba5 Knowledge of the Unix operating system is fundamental to being productive on HPC systems such as those offered by Melbourne Bioinformatics. This workshop will introduce you to the fundamental Unix concepts by way of a series of hands-on exercises. 2017-05-03 09:30:00 UTC 2017-05-03 12:30:00 UTC Melbourne Bioinformatics Lab-14, Melbourne Bioinformatics, 700 Swanston St, 700, Swanston Street, Carlton, Australia Lab-14, Melbourne Bioinformatics, 700 Swanston St, 700, Swanston Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Computerprogramming
  • Introduction to High Performance Computing

    3 May 2017

    Carlton, Australia

    Introduction to High Performance Computing https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-b382ec6e-3021-45a5-8d2c-9d29f298f5c0 Using High Performance Computing (HPC) resources such as Melbourne Bioinformatics in an effective and efficient manner is key to modern research. This workshop will introduce you to HPC environments and assist you to get on with your research. 2017-05-03 13:30:00 UTC 2017-05-03 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, , Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton Australia Computer science University of Melbourne [] [] workshops_and_courses [] bioinformatics
  • Introduction to Galaxy and the Genomics Virtual Laboratory

    4 May 2017

    Carlton, Australia

    Introduction to Galaxy and the Genomics Virtual Laboratory https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-genomics-virtual-laboratory Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis. Finally, it allows users to share and publish analyses via the web. This beginners workshop will introduce Galaxy’s interface, tool use, histories, and workflows and get new users of the Genomics Virtual Laboratory up and running. 2017-05-04 09:30:00 UTC 2017-05-04 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] genomics
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    4 May 2017

    Carlton, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl In this tutorial we will cover the concepts of RNA-Seq differential gene expression (DGE) analysis using Galaxy: an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. 2017-05-04 13:30:00 UTC 2017-05-04 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700, Swanston Street, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700, Swanston Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] RNA-Seq
  • Variant Calling with Galaxy and the GVL for beginners

    5 May 2017

    Carlton, Australia

    Variant Calling with Galaxy and the GVL for beginners https://tess.elixir-europe.org/events/variant-calling-with-galaxy-and-the-gvl-for-beginners In this tutorial we cover the concepts of detecting small variants (SNVs and indels) in human genomic DNA using a small set of reads from chromosome 22. The tutorial is designed to introduce the tools, datatypes and workflow of variant detection. We will align reads to the genome, look for differences between reads and reference genome sequence, and filter the detected genomic variation manually to understand the computational basis of variant calling. 2017-05-05 09:30:00 UTC 2017-05-05 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston Street, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston Street Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Variant-calling
  • Introduction to Molecular Modelling & Visualisation for Life Sciences

    8 May 2017

    Carlton, Australia

    Introduction to Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/introduction-to-molecular-modelling-visualisation-for-life-sciences-4d740e1a-f39b-4e9e-82e5-ee9fbe3a6625 This Melbourne Bioinformatics workshop introduces beginners to molecular modelling and visualisation techniques using packages such as VMD and NAMD. After introductory talks participants will be given practical exercises to visualise molecules as well as learn how to submit jobs to the Melbourne Bioinformatics clusters. 2017-05-08 09:30:00 UTC 2017-05-08 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, , Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton Australia Molecular modelling University of Melbourne [] [] workshops_and_courses [] Computational modelling
  • Intermediate Molecular Modelling & Visualisation for Life Sciences

    8 May 2017

    Carlton, Australia

    Intermediate Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/intermediate-molecular-modelling-visualisation-for-life-sciences-7a263e15-0731-4ece-abcc-e2bf96ddb3e4 This workshop is for the intermediate user who is already familiar with molecular modelling and submitting cluster jobs, and is interested in learning more advanced job submission and visualisation techniques. Topics include: advanced job submission scripts; data analysis; and molecular image and movie making. 2017-05-08 13:30:00 UTC 2017-05-08 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, , Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton Australia Molecular modelling University of Melbourne [] [] workshops_and_courses [] Computational modelling
  • Common Workflow Language with Michael Crusoe

    11 May 2017

    University of Melbourne, Australia

    Common Workflow Language with Michael Crusoe https://tess.elixir-europe.org/events/common-workflow-language-with-michael-crusoe 2017-05-11 12:00:00 UTC 2017-05-11 13:00:00 UTC Melbourne Bioinformatics FW Jones Theatre, Level 3, Medical Building , University of Melbourne, Australia FW Jones Theatre, Level 3, Medical Building University of Melbourne Australia Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] programmingWorkflowsBioinformatics
  • Open source science with Git and GitHub

    23 May 2017

    Carlton, Australia

    Open source science with Git and GitHub https://tess.elixir-europe.org/events/open-source-science-with-git-and-github-a46066bb-8d85-4c96-8cc6-1f4d8d098e1d Learn how to keep a record your code’s evolution over time using the git version control system, used by companies and open-source projects worldwide. Git allows you to easily maintain snapshots of your code as you make changes, keep multiple parallel versions of your code, and collaborate with others. 2017-05-23 13:00:00 UTC 2017-05-23 17:00:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, , Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] Computer Programming
  • Genome Annotation with Monica Munoz-Torres

    27 June 2017

    University of Melbourne, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres 2017-06-27 09:00:00 UTC 2017-06-27 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Genomics Data submission, annotation and curation Melbourne Bioinformatics [] [] [] [] BioinformaticsGenomics
  • Introduction to NGS Data Analysis

    27 - 29 June 2017

    Camperdown, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis-8290433d-ac97-4f5c-99ed-8a9bec24a058 Introduction to NGS Data Analysis is a three-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq, RNA-Seq data and de novo genome assembly. 2017-06-27 09:00:00 UTC 2017-06-29 17:00:00 UTC Bioplatforms Australia Johns Hopkins Centre, Camperdown, Australia Johns Hopkins Centre Camperdown Australia 2006 Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] Genomics
  • Open source science with Monica Munoz-Torres

    28 June 2017

    University of Melbourne, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science 2017-06-28 09:00:00 UTC 2017-06-28 17:00:00 UTC Melbourne Bioinformatics 161 Barry St, Carlton, University of Melbourne, Australia 161 Barry St, Carlton University of Melbourne Australia Bioinformatics Melbourne Bioinformatics [] [] workshops_and_courses [] Bioinformatics
  • R/Bash Workshop

    28 - 29 June 2017

    Saint Lucia, Australia

    R/Bash Workshop https://tess.elixir-europe.org/events/r-bash-workshop This hands-on workshop will cover basic programming concepts and tools, including program design, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. 2017-06-28 09:00:00 UTC 2017-06-29 17:00:00 UTC COMBINE Australia The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Australia Computer science University of Queensland [] [] workshops_and_courses [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    29 June 2017

    Hobart, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-d4d8d495-d20f-464e-9c28-1b6fcd88814b 2017-06-29 09:00:00 UTC 2017-06-29 17:00:00 UTC University of Tasmania Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart, Australia Maths & Physics Building, Sandy Bay Campus, University of Tasmania Hobart Australia Bioinformatics University of Tasmania [] [] [] [] Bioinformatics
  • Open source science with Monica Munoz-Torres

    30 June 2017

    Hobart, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science-with-monica-munoz-torres 2017-06-30 09:00:00 UTC 2017-06-30 12:00:00 UTC University of Tasmania Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart, Hobart, Australia Maths & Physics Building, Sandy Bay Campus, University of Tasmania, Hobart Hobart Australia Bioinformatics University of Tasmania [] [] [] [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    3 July - 10 May 2017

    James Cook University, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-e0429e7a-0897-4426-bb63-1136a2131375 2017-07-03 09:00:00 UTC 2017-05-10 17:00:00 UTC James Cook University Room 034-011C, James Cook University, Townsville Campus, James Cook University, Australia Room 034-011C, James Cook University, Townsville Campus James Cook University Australia Bioinformatics James Cook University ira.cooke@jcu.edu.au [] [] workshops_and_courses [] Bioinformaticsgenomics
  • RNA-seq Analysis Workshop

    6 - 7 July 2017

    Saint Lucia, Australia

    RNA-seq Analysis Workshop https://tess.elixir-europe.org/events/rna-seq-analysis-workshop In this workshop, you will learn how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the limma-voom analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available. Some basic R knowledge is assumed. If you are not familiar with the R statistical programming language we strongly encourage you attend our R/Bash workshop or a similar course prior to attending. 2017-07-06 09:00:00 UTC 2017-07-07 17:00:00 UTC COMBINE Australia The University of Queensland, Saint Lucia, Australia The University of Queensland Saint Lucia Australia RNA-Seq University of Queensland [] [] workshops_and_courses [] BioinformaticsRNA-Seq
  • Introduction to Metagenomics workshop

    11 - 12 July 2017

    Sydney, Australia

    Introduction to Metagenomics workshop https://tess.elixir-europe.org/events/introduction-to-metagenomics-workshop The hands-on Introduction to Metagenomics workshop introduces tools and workflows used to explore amplicon and shotgun metagenomics sequence data. 2017-07-11 09:00:00 UTC 2017-07-12 17:00:00 UTC Bioplatforms Australia Macquarie University, Sydney, Australia Macquarie University Sydney Australia Genomics Bioinformatics Macquarie University kchamp@bioplatforms.com [] [] [] [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    12 July 2017

    The University of Queensland, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-9ecb2f55-2050-4e45-9349-69a2ab8676f3 2017-07-12 09:00:00 UTC 2017-07-12 17:00:00 UTC University of Queensland Small multimedia room 3.146, Queensland Bioscience Precinct, The University of Queensland, Australia Small multimedia room 3.146, Queensland Bioscience Precinct The University of Queensland Australia Bioinformatics University of QueenslandQCIF [] [] workshops_and_courses [] Bioinformatics
  • Open source science with Monica Munoz-Torres

    13 July 2017

    The University of Queensland, Australia

    Open source science with Monica Munoz-Torres https://tess.elixir-europe.org/events/open-source-science-with-monica-munoz-torres-79282d2b-864b-492c-93a0-3c5b57cbec95 2017-07-13 13:00:00 UTC 2017-07-13 17:00:00 UTC University of Queensland Small multimedia room 3.146, Queensland Bioscience Precinct, Chancellors Place, St Lucia , The University of Queensland, Australia Small multimedia room 3.146, Queensland Bioscience Precinct, Chancellors Place, St Lucia The University of Queensland Australia Bioinformatics University of QueenslandQCIF [] [] workshops_and_courses [] Bioinformatics
  • Genome Annotation with Monica Munoz-Torres

    17 July 2017

    Nedlands, Australia

    Genome Annotation with Monica Munoz-Torres https://tess.elixir-europe.org/events/genome-annotation-with-monica-munoz-torres-de406051-7f73-4596-9937-e4489eff43f9 2017-07-17 09:00:00 UTC 2017-07-17 17:00:00 UTC Australian Genome Research Facility Harry Perkins Institute of Medical Research, 6 Verdun St, Nedlands, Australia Harry Perkins Institute of Medical Research, 6 Verdun St Nedlands Perth, Western Australia Australia Bioinformatics Genomics Australian Genome Research FacilityHarry Perkins Institute of Medical Research [] [] workshops_and_courses [] Bioinformatics
  • Long-read Data Analysis workshop

    18 - 19 July 2017

    Kensington, Australia

    Long-read Data Analysis workshop https://tess.elixir-europe.org/events/long-read-data-analysis-workshop Workshop Content: Introduction to long-read sequencing Practical considerations when performing long-read sequencing and analysis Introduction to the command line interface and NGS file formats Short and long-read de novo genome assembly (microbial) Comparison between short and long-read assemblies This workshop will be delivered using a mixture of lectures, hands-on practical sessions, and open discussions. 2017-07-18 09:00:00 UTC 2017-07-19 17:00:00 UTC Bioplatforms Australia Red Centre Building, Kensington, Australia Red Centre Building Kensington Australia 2033 Bioinformatics University of New South Wales [] [] workshops_and_courses [] Genomics
  • An Introduction to Genomics with R

    18 July 2017

    Adelaide, Australia

    An Introduction to Genomics with R https://tess.elixir-europe.org/events/an-introduction-to-genomics-with-r 2017-07-18 09:00:00 UTC 2017-07-18 17:00:00 UTC University of Adelaide Room 422, Horace Lamb Building, The University of Adelaide, Adelaide, Australia Room 422, Horace Lamb Building, The University of Adelaide Adelaide SA Australia Bioinformatics University of Adelaide [] [] workshops_and_courses [] R-programminggenomics
  • Introduction to R

    24 July 2017

    Clayton, Australia

    Introduction to R https://tess.elixir-europe.org/events/introduction-to-r-fa4063f1-c129-4635-8b07-6e906e39750c 2017-07-24 10:00:00 UTC 2017-07-24 17:00:00 UTC Monash Bioinformatics Training Room 2 (T2), Matheson Library, Monash University, Clayton, Australia Training Room 2 (T2), Matheson Library, Monash University Clayton Australia Bioinformatics Monash University [] [] workshops_and_courses [] R-programming
  • Cancer Genomics workshop

    25 - 27 July 2017

    University of Sydney, Australia

    Cancer Genomics workshop https://tess.elixir-europe.org/events/cancer-genomics-workshop-4a98d5cd-8e5d-42d0-9845-3a52e9fee96d The Cancer Genomics workshop aims to provide an introduction to cancer genomics analytical pipelines for single nucleotide variations (SNV), copy number variations (CNV) and structural variations (SV). 2017-07-25 09:00:00 UTC 2017-07-27 17:00:00 UTC Bioplatforms Australia Charles Perkins Centre, University of Sydney, Australia Charles Perkins Centre University of Sydney Australia Bioinformatics University of Sydney kchamp@bioplatforms.com [] [] workshops_and_courses [] BioinformaticsCancerGenomics
  • Introduction to Programming with Python

    26 July 2017

    Sydney, Australia

    Introduction to Programming with Python https://tess.elixir-europe.org/events/introduction-to-programming-with-python 2017-07-26 09:00:00 UTC 2017-07-26 16:00:00 UTC Intersect Australia Fisher Training Room 210, Fisher Library, Camperdown Campus, The University of Sydney, Sydney, Australia Fisher Training Room 210, Fisher Library, Camperdown Campus, The University of Sydney Sydney Australia Bioinformatics University of Sydney [] [] workshops_and_courses [] Python
  • Introduction to Programming with R

    27 July 2017

    Sydney, Australia

    Introduction to Programming with R https://tess.elixir-europe.org/events/introduction-to-programming-with-r-607032a5-9a9f-443a-b6a8-fe4358cdeb19 2017-07-27 09:30:00 UTC 2017-07-27 16:30:00 UTC Intersect Australia UNSW Kensington, Computer Lab G16-G17, ground floor, Wallace Wurth Building , Sydney, Australia UNSW Kensington, Computer Lab G16-G17, ground floor, Wallace Wurth Building Sydney Australia Bioinformatics University of New South Wales [] [] workshops_and_courses [] R-programming
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