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114 events found

Content provider: Birmingham Metabolomics Tra...  or NBIS  or CSC - IT Center for Science 

  • PostGIS paikkatietokannan käyttö

    11 - 12 April 2016

    Elixir node event
    PostGIS paikkatietokannan käyttö https://tess.elixir-europe.org/events/postgis-paikkatietokannan-kaytto PostGIS peruskurssi, missä opit asentamaan tietokannan, kyselemään ja analysoimaan sitä SQL-lausekkeilla ja konfiguroimaan muun muassa karttaprojektioihin liittyviä ongelmia. 2016-04-11 09:00:00 UTC 2016-04-12 16:15:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Webinar: Running array jobs in Taito

    12 April 2016

    Elixir node event
    Webinar: Running array jobs in Taito https://tess.elixir-europe.org/events/webinar-running-array-jobs-in-taito How to run array jobs in Taito. Join the webinar here: https://connect.funet.fi/webinar 2016-04-12 13:00:00 UTC 2016-04-12 13:30:00 UTC CSC Join the webinar here: https://connect.funet.fi/webinar Join the webinar here: https://connect.funet.fi/webinar [] [] [] [] [] []
  • Elmer FEM Course

    13 - 14 April 2016

    Elixir node event
    Elmer FEM Course https://tess.elixir-europe.org/events/elmer-fem-course Elmer FEM Course presents the basics of the open source finite element software for multi-physical problems. 2016-04-13 09:00:00 UTC 2016-04-14 16:30:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Advanced Threading and Optimization

    18 - 20 April 2016

    Elixir node event
    Advanced Threading and Optimization https://tess.elixir-europe.org/events/advanced-threading-and-optimization The course includes topics on code optimization for x86 platforms and efficient code parallelization using OpenMP threading. Advanced aspects of threading and optimization, such as new features of OpenMP 4.0, will be covered during the course. Some performance aspects of MPI will also be discussed. 2016-04-18 09:00:00 UTC 2016-04-20 16:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Webinar: Module system on Taito

    19 April 2016

    Elixir node event
    Webinar: Module system on Taito https://tess.elixir-europe.org/events/webinar-module-system-on-taito This webinar explains how to use the module system on Taito. 2016-04-19 13:00:00 UTC 2016-04-19 13:30:00 UTC CSC https://connect.funet.fi/webinar https://connect.funet.fi/webinar [] [] [] [] [] []
  • Webinar: Using FGCI grid

    26 April 2016

    Elixir node event
    Webinar: Using FGCI grid https://tess.elixir-europe.org/events/webinar-using-fgci-grid This webinar demonstrates, how camputing tasks can be submitted to the The Finnish Grid and Cloud Infrasructuire (FGCI). With the ARC middleware jobs can be submitted to FGCI as well from the servers of CSC and from the users local environment. 2016-04-26 13:30:00 UTC 2016-04-26 14:00:00 UTC CSC https://connect.funet.fi/webinar https://connect.funet.fi/webinar [] [] [] [] [] []
  • Vaadin meetup at CSC

    28 April 2016

    Elixir node event
    Vaadin meetup at CSC https://tess.elixir-europe.org/events/vaadin-meetup-at-csc This time our Vaadin meetup is hosted by CSC, the home of Finland's most powerful computers. We'll first hear how CSC is using Vaadin in their services, then we get a brief introduction to Spring Boot and Vaadin and the remaining time is reserved for informal Q&A and hacking. 2016-04-28 15:00:00 UTC 2016-04-28 18:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Protein Modeling with Discovery Studio

    10 May 2016

    Elixir node event
    Protein Modeling with Discovery Studio https://tess.elixir-europe.org/events/protein-modeling-with-discovery-studio This one day course provides introduction to Discovery Studio protein modeling enviroment. 2016-05-10 09:00:00 UTC 2016-05-10 17:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • POSTPONED: cPouta Cloud Course

    11 May 2016

    Elixir node event
    POSTPONED: cPouta Cloud Course https://tess.elixir-europe.org/events/cpouta-cloud-course This course will give a practical introduction to using CSC's cPouta cloud service. 2016-05-11 09:00:00 UTC 2016-05-11 17:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Webinar: How to use Techila with R

    17 May 2016

    Elixir node event
    Webinar: How to use Techila with R https://tess.elixir-europe.org/events/webinar-how-to-use-techila-with-r In this webinar we learn how to run parallel R jobs using the Techila service. 2016-05-17 13:00:00 UTC 2016-05-17 13:30:00 UTC CSC https://connect.funet.fi/webinar https://connect.funet.fi/webinar [] [] [] [] [] []
  • FGCI ARC tutorial

    20 May 2016

    Elixir node event
    FGCI ARC tutorial https://tess.elixir-europe.org/events/fgci-arc-tutorial The tutorial is intended to help users of local clusters benefit from computing resources available at other FGCI (Finnish Grid and Cloud Infrastructure) sites via the NorduGrid ARC middleware. 2016-05-20 10:00:00 UTC 2016-05-20 15:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Introduction to the Techila HPC system - How to use Techila with R

    31 May 2016

    Elixir node event
    Introduction to the Techila HPC system - How to use Techila with R https://tess.elixir-europe.org/events/introduction-to-the-techila-hpc-system-how-to-use-techila-with-r This course will give a practical introduction on how to use the Techila HPC system with R. 2016-05-31 11:00:00 UTC 2016-05-31 15:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • Funetin tekniset päivät ja vuosikokous 2016

    1 - 2 June 2016

    Elixir node event
    Funetin tekniset päivät ja vuosikokous 2016 https://tess.elixir-europe.org/events/funetin-tekniset-paivat-ja-vuosikokous-2016 Nämä Funet-jäsenorganisaatioiden edustajille tarkoitetut tapahtumat järjestetään Hankenilla, Helsingissä. Vuosikokouksen (1.6.. iltapäivä) mahdollisille osallistujille on lähetetty erillinen kutsu. 2016-06-01 09:30:00 UTC 2016-06-02 15:00:00 UTC CSC Hanken, Arkadiankatu 22, Helsinki. Katso Lisätiedot (vaatii sisäänkirjautumista) Hanken, Arkadiankatu 22, Helsinki. Katso Lisätiedot (vaatii sisäänkirjautumista) [] [] [] [] [] []
  • Obtaining a Converged Solution with Abaqus

    2 - 3 June 2016

    Elixir node event
    Obtaining a Converged Solution with Abaqus https://tess.elixir-europe.org/events/obtaining-a-converged-solution-with-abaqus Suomenkielinen kurssi Abaquksen käyttöön jo perehtyneille 2016-06-02 09:00:00 UTC 2016-06-03 17:00:00 UTC CSC Kurssi järjestetään CSC:n tiloissa, Keilaranta 14, Espoo. Kurssi järjestetään CSC:n tiloissa, Keilaranta 14, Espoo. [] [] [] [] [] []
  • OpenFOAM Introduction Course

    7 - 8 June 2016

    Elixir node event
    OpenFOAM Introduction Course https://tess.elixir-europe.org/events/openfoam-introduction-course OpenFOAM introduction course at University of Oulu 2016-06-07 09:00:00 UTC 2016-06-08 16:15:00 UTC CSC Mikroluokka YL124 Mikroluokka YL124 [] [] [] [] [] []
  • INTEGRATE Summer School 2016

    7 - 10 June 2016

    Elixir node event
    INTEGRATE Summer School 2016 https://tess.elixir-europe.org/events/integrate-summer-school-2016 HTS, Medicinal Chemistry, and Cell Biology in the Discovery of New Drugs Active Against Resistant G-negative Bacteria 2016-06-07 10:00:00 UTC 2016-06-10 14:00:00 UTC CSC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] [] [] []
  • ELIXIR-EXCELERATE WP4 F2F Meeting

    8 - 10 June 2016

    Elixir node event
    ELIXIR-EXCELERATE WP4 F2F Meeting https://tess.elixir-europe.org/events/elixir-excelerate-wp4-workshop The ELIXIR-EXCELERATE WP4 F2F meeting in Helsinki will bring together WP4 participants to plan the work distribution and put together the upcoming deliverables. 2016-06-08 12:00:00 UTC 2016-06-10 17:00:00 UTC CSC The event is held mainly at the Hotel Katajanokka in Helsinki. The event is held mainly at the Hotel Katajanokka in Helsinki. [] [] [] [] [] []
  • Finnish OpenFOAM® User Day 2016

    9 June 2016

    Elixir node event
    Finnish OpenFOAM® User Day 2016 https://tess.elixir-europe.org/events/finnish-openfoam-user-day-2016 Annual OpenFOAM user meeting 2016-06-09 09:00:00 UTC 2016-06-09 17:00:00 UTC CSC Lecture room L4 Lecture room L4 [] [] [] [] [] []
  • CANCELED: Linux 1 - Introduction to Linux

    23 - 24 January 2017

    Elixir node event
    CANCELED: Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux This two day course will cover the very basics of Unix/Linux. It serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2017-01-23 09:30:00 UTC 2017-01-24 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • RNA-seq, 1 hp

    13 - 16 March 2017

    Elixir node event
    RNA-seq, 1 hp https://tess.elixir-europe.org/events/rna-seq-1-hp-bb9f6240-741a-4ea8-aa48-deda7e1198b4 Course content This course will cover both theoretical and hands-on exposure to current topics in RNA-seq analysis. Lectures from experts in RNA-seq and biostatistics will cover a range of cutting-edge issues in RNA quality control, transcript assembly in model and non-model organisms, differential expression analysis and downstream analysis using other types of data. An extensive case study in the computer lab will familiarize you with concepts of mapping, quality control of your RNA-seq data, de novo assembly, assembly using a reference, differential expression analysis and downstream enrichment analysis. Topics covered will include: Gene and isoform detection using short RNA-seq reads Gene and isoform detection using long RNA-seq reads Gene and isoform detection combining RNA-seq data with other data sources Quality assessment of RNA-seq data Differential expression analysis using RNA-seq data on multiple cells Downstream analysis after identifying differentially expressed genes. 2017-03-13 09:00:00 UTC 2017-03-16 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • R Programming Foundations for Life Scientists, 2 hp

    27 March - 1 April 2017

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp-56fa30d4-110b-45eb-a88c-682e65f58c51 Course content The course is addressed to life scientists with little or moderate experience in programming but enthusiastic about learning how to use R to make their work smoother and easier. The course covers fundamental concepts of programming and software design focusing on programming in R. We will go through various aspects of R scripting with some more attention paid to the parts useful for life scientists. After introductory lectures on good programming practices, basic software design theory and a brief overview of R, we will delve into programming. We start by learning how to use R as a simple calculator, what are variable types, how to use data structures, how to implement repeating actions with and without loops, how to take actions based on certain condition. We gradually proceed to loading data, importing data from common file formats, we do some basic matrix algebra; learn how to perform basic statistical tests and how to visualize results. We will also put stress on giving you tools to access help and information on R-related challenges and issues, we will spend some time on learning how to install external packages, how to find bugs and address common installation issues. We also mention some more advanced topics and tell you more about BioConductor that is an invaluable tool for a computational biologist. You will also learn how to document your work and how to generate automatic reports. We try to illustrate all these concepts with some real-life examples and interesting lab tasks. The course will be given by experienced computational biologists from SciLifeLab and Uppsala University. Dr. Marcin Kierczak responsible for the content of the course is an experienced R user/coder, who has previously developed R packages and has experience in teaching programming and R to different audiences. 2017-03-27 09:00:00 UTC 2017-04-01 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Metagenomics Data Analysis Workshop @ CSC

    3 - 6 April 2017

    Espoo, Finland

    Elixir node event
    Metagenomics Data Analysis Workshop @ CSC https://tess.elixir-europe.org/events/metagenomics-data-analysis-workshop-csc Description Metagenomics investigates the composition and function of microbial communities in different environments based on direct isolation of genetic material. It has been accelerated by the advances in high-throughput sequencing technologies, and the increasing data sizes require efficient analysis methods and advanced computing approaches. This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced. The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody. META-pipe has been developed by ELIXIR-Norway, and it offers tools for pre-processing (Prinseq, FastQC), assembly (MetaRay/Ray, Mira), taxonomic classification (LC-classifier), gene prediction (Glimmer/MGA), functional analysis (Blast, Priam, InterProScan) and visualization (Metarep). META-pipe analysis jobs use a Spark cluster in the cloud for computation. Chipster offers over 360 analysis tools for different kinds of high-thoughput data. For community analysis of amplicon sequencing data it has tools for pre-processing (Prinseq, Trimmomatic, FastQC, Mothur), taxonomic classification (Mothur), and statistical analysis for marker gene studies (R packages vegan, rich, biodiversityR, pegas and labdsv).  The workshop is organized in collaboration with the ELIXIR EXCELERATE project. Lecturers Nils Willassen (ELIXIR-Norway) Espen Robertsen (ELIXIR-Norway) Erik Hjerde (ELIXIR-Norway) Aleksandr Agafonov (ELIXIR-Norway) Anu Mikkonen (University of Jyväskylä) Jenni Hultman (University of Helsinki) Petri Auvinen (University of Helsinki) Jarno Tuimala (RS training) Maria Lehtivaara (CSC) Kimmo Mattila (CSC) Eija Korpelainen (CSC) Program Please note that there might be still small changes to the schedule. Day 1, Monday 3.4.2017: OPTIONAL MODULE - Community analysis of amplicon sequencing data 9:00-10:45 LECTURES Who's there? Community analysis by amplicon sequencing (Anu Mikkonen) Short demo: Using QIIME in parallel fashion in HPC environments (Kimmo Mattila) 10:45-11:00 Coffee break 11:00-12:30 HANDS-ON SESSION: Using the Chipster software to analyze 16S rRNA data (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen) Introduction to Chipster Data preprocessing with Mothur-based tools and FastQC 12:30-13:30 Lunch 13:30-16:30 HANDS-ON SESSION: Using Chipster continues (Eija Korpelainen, Maria Lehtivaara, Anu Mikkonen and Jarno Tuimala) // coffee break included Data preprocessing with Mothur-based tools Taxonomic classification with Mothur-based tools Statistical analysis of marker gene data: Comparing diversity and abundance between groups Visualization Day 2, Tuesday 4.4.2017: Sample preparation, sequencing, quality control, filtering and assembly 9:00-12:30 LECTURES 9:00-10:15 Selecting and preparing samples for metaomics (Anu Mikkonen) Your samples are only as good as your sample preparation routines are, and your results are only as valid as your experimental design is. This talk will discuss, showing plenty of real-life examples, all the things that can go wrong before you even send your DNA samples out for the sequencing. The talk includes lots of practical recommendations on what to do before, or sometimes instead of, metagenomics analysis. 10:15-10:45 Sequencing technologies for metagenomics (Petri Auvinen) 10:45-11:00 Coffee break 11:00-11:30 Metagenomics analysis – an overview (Nils Willassen) 11:30-12:00 META-pipe analysis platform overview (Espen Robertsen, Erik Hjerde) 12:00-12:30 Metagenomics in the cloud (Aleksandr Agafonov) 12:30-13:15 Lunch 13:15-16:30 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Quality control and filtering Assembly Validation Day 3, Wednesday 5.4.2017: Taxonomic and functional analysis 9:00-11:30 LECTURES 9:00-9:30 Taxonomic classification (Nils Willassen) 9:30-10:00 Functional assignment (Espen Robertsen) 10:00-10:15 Coffee break 10:15-10:45 New data resources for marine metagenomics (Nils Willassen) 10:45-11:15 The metagenomics data life-cycle: standards and best practice (TBD) 11:15-12:00 HANDS-ON EXERCISES: Using the META-pipe platform (Nils Willassen, Espen Robertsen, Erik Hjerde) Introduction, taxonomic classification 12:00-13:00 Lunch 13:00-16:30 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Taxonomic classification continued Functional assignment Day 4, Thursday 6.4.2017: Comparative metagenomics and other analysis 9:00-12:00 HANDS-ON EXERCISES: Using the META-pipe platform continued (Nils Willassen, Espen Robertsen, Erik Hjerde) / / coffee break included Visualization of data Comparative metagenomics 12:00-13:00 Lunch 13:00-14:30 LECTURES AND WRAP-UP 13:00-13:35 Arctic metagenomes as a scaffold for understanding metatranscriptomic data (Jenni Hultman) 13:35-14:00 Genome assembly from metagenomic reads (Jenni Hultman) 14:00-14:30 Feedback and wrap up   Language:  EnglishPrice:          Free of charge https://events.prace-ri.eu/event/602/ 2017-04-03 06:00:00 UTC 2017-04-06 14:00:00 UTC ELIXIR EXCELERATE project and PRACE CSC Finland Oy, Espoo, Finland CSC Finland Oy Espoo Finland Metagenomics CSC [] Anyone workshops_and_courses registration_of_interest EXCELERATEMarine Metagenomics
  • Metagenomics data analysis

    3 - 6 April 2017

    Elixir node event
    Metagenomics data analysis https://tess.elixir-europe.org/events/metagenomics-data-analysis This international workshop covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. It has also an optional module on community analysis of amplicon sequencing data. 2017-04-03 09:00:00 UTC 2017-04-06 17:00:00 UTC The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. The course takes place at the training facilities of CSC (computer classroom Dogmi and auditorium). The address is Keilaranta 14, Espoo, Finland. You can reach us by public transportation, read more. [] [] [] workshops_and_courses [] []
  • Advanced Optimization and Threading

    26 - 28 April 2017

    Elixir node event
    Advanced Optimization and Threading https://tess.elixir-europe.org/events/advanced-optimization-and-threading This course will give you the tools and skills needed for writing high performing code for scientific computing. It focuses on techniques that enable you to extract maximum performance from a single node in a modern supercomputer or cluster, which provides the foundation for good performance even for codes running on multiple nodes. 2017-04-26 09:00:00 UTC 2017-04-28 16:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Linux 1 - Introduction to Linux

    15 - 16 May 2017

    Elixir node event
    Linux 1 - Introduction to Linux https://tess.elixir-europe.org/events/linux-1-introduction-to-linux-20a2b0b6-7ec2-489a-b317-6dd9dbf6131b This two day course will cover the very basics of Unix/Linux. It serves as an introduction to those who are completely new to Linux. Both days have extended hands-on exercises. 2017-05-15 09:30:00 UTC 2017-05-16 16:30:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • CSC Summer School in High-Performance Computing 2017

    27 June - 5 July 2017

    Elixir node event
    CSC Summer School in High-Performance Computing 2017 https://tess.elixir-europe.org/events/csc-summer-school-in-high-performance-computing-2017 The 8th CSC Summer School brings together undergraduate and graduate students and postdoctoral researchers in different disciplines of scientific computing. The contents consist of lectures and hands-on training on parallel programming, code optimization and other necessary skills in development of scientific software. 2017-06-27 09:00:00 UTC 2017-07-05 17:00:00 UTC Solvalla Sports Institute near the Nuuksio national park in the Helsinki metropolitan area. Solvalla Sports Institute near the Nuuksio national park in the Helsinki metropolitan area. [] [] [] workshops_and_courses [] []
  • Protein–lipid interactions: Advanced experimental and computational tools

    2 - 9 July 2017

    Elixir node event
    Protein–lipid interactions: Advanced experimental and computational tools https://tess.elixir-europe.org/events/protein-lipid-interactions-advanced-experimental-and-computational-tools This EMBO practical course will bridge cutting edge experimental and computational tools to study lipid-protein interactions. Advanced PhD students and Postdocs will receive ample opportunities to learn about the increasing importance and benefits of interdisciplinary research in this developing area. Followed by one day of lectures by top scientists in the field, the practical part will be structured into 5 modules, where participants will be able to learn latest wet lab techniques combined with advanced molecular dynamics simulations in small groups. 2017-07-02 18:00:00 UTC 2017-07-09 12:00:00 UTC See the EMBO event page for details. See the EMBO event page for details. [] [] [] workshops_and_courses [] []
  • Variant analysis with GATK

    13 - 15 September 2017

    Elixir node event
    Variant analysis with GATK https://tess.elixir-europe.org/events/variant-analysis-with-gatk-3034974f-dd45-41d0-ac44-3cd647115520 This workshop will focus on the core steps involved in calling variants with the Broad's Genome Analysis Toolkit, using the "Best Practices" developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. 2017-09-13 09:00:00 UTC 2017-09-15 17:00:00 UTC The lecture day 13.9 is organised in Biomedicum Helsinki 1 in Seminar room 3 at Haartmaninkatu 8. The hands-on days 14.-15.9 take place in the computer classroom Dogmi at CSC at Keilaranta 14, Espoo. The lecture day 13.9 is organised in Biomedicum Helsinki 1 in Seminar room 3 at Haartmaninkatu 8. The hands-on days 14.-15.9 take place in the computer classroom Dogmi at CSC at Keilaranta 14, Espoo. [] [] [] workshops_and_courses [] []
  • Single cell RNA-seq data analysis

    28 - 29 September 2017

    Elixir node event
    Single cell RNA-seq data analysis https://tess.elixir-europe.org/events/single-cell-rna-seq-data-analysis This hands-on course introduces the participants to single-cell RNA-seq data analysis concepts and tools. It consists of two alternative days, please select based on your computational background EITHER 1) 28.9 Single cell RNA-seq data analysis with R (previous experience with R required), OR 2) 29.9 Single cell RNA-seq data analysis with Chipster (suitable for everybody) 2017-09-28 09:00:00 UTC 2017-09-29 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Quality Assurance and Quality Control in Metabolomics

    12 - 13 October 2017

    Birmingham, United Kingdom

    Elixir node event
    Quality Assurance and Quality Control in Metabolomics https://tess.elixir-europe.org/events/quality-assurance-and-quality-control-in-metabolomics-ea29a17f-d41e-4488-808b-b137b7c82b93 This 2-day course will provide a comprehensive theoretical overview and hands-on experience of the application of quality assurance (QA) and quality control (QC) in metabolomics. It will include both theoretical and practical components to provide hands-on experience of using the mass spectrometer (a maximum of 4 people working on the instrument in a session) and the analysis of data. Experts who have developed the application of QA and QC procedures within the field will lead the course. 2017-10-12 09:00:00 UTC 2017-10-13 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
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