Organizer: Pedro Fernandes
PO21 Precision Oncology
25 - 29 October 2021
Oeiras, PortugalPO21 Precision Oncology http://gtpb.igc.gulbenkian.pt/bicourses/2021/PO21/ https://tess.elixir-europe.org/events/po21-precision-oncology Precision Oncology (PO) is already revolutionizing healthcare and will play a dominant role in the future of cancer therapy. PO integrates tumor multi-omic profiles and data that reflect the course of the disease, lifestyle and environment to guide clinical decisions during cancer patient journey such as prevention, diagnosis and treatment. Bioinformatics analyses are essential to identify patients who will benefit from treatment based on their molecular profile, and to tailor chemotherapeutic regimens accordingly. The aim of the course is to present a complete computational pipeline for the analysis and interpretation of Next-Generation Sequencing (NGS) data such as exome sequencing or targeted panels that are commonly used in the clinic. We will address the implementation of large-scale genomic sequencing in clinical practice and the recently developed computational strategies for the analysis of NGS data with a particular emphasis on the interpretation of the results, selection of biomarkers of drug response and afford opportunities to match therapies with the characteristics of the individual patient's tumor. Exercises and case studies focused on cancer will be used to illustrate the principles of how genetics influence led to refining diagnoses and personalized treatment of cancer disease. Although focused on cancer, some of the principles and steps could be extrapolated to other complex diseases. 2021-10-25 09:30:00 UTC 2021-10-29 18:30:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Oeiras Portugal 2780-156 Oncology IGC - Instituto Gulbenkian de Ciência Pedro L Fernandes, Training Coordinator, firstname.lastname@example.org Oeiras Valley healthcare professionals Bioinformaticians 14 workshops_and_courses  Clinical oncologyVariant callingDrug Targetting
AM21 Applied Metagenomics
2 - 5 November 2021
Oeiras, PortugalAM21 Applied Metagenomics http://gtpb.igc.gulbenkian.pt/bicourses/2021/AM21/ https://tess.elixir-europe.org/events/am21-applied-metagenomics This course will give a comprehensive introduction to the research field of metagenomics. It will cover the basic concepts of microbiome analysis of shotgun metagenomic data using state of the art bioinformatics (amplicon sequencing will not be covered). The analysis methods that are being introduced are generic for all types of microbiomes, but we will be using data from the human microbiome as showcases. The course will start with the main preprocessing steps of raw sequence data, before various downstream analysis will be covered separately. These include taxonomic analysis, assembly, binning, and finally functional analysis with focus on antibiotic resistance genes. The theoretical part for each topic will be introduced via lectures, followed by practical hands-on exercises. 2021-11-02 09:30:00 UTC 2021-11-05 18:00:00 UTC Pedro Fernandes Instituto Gulbenkian de Ciência, Oeiras, Portugal Instituto Gulbenkian de Ciência Oeiras Oeiras Portugal 2780-156 Metagenomic sequencing Metagenomics IGC - Instituto Gulbenkian de Ciência Pedro L. Fernandes, Training Coordinator, email@example.com Oeiras Valley bioinformaticiansMicrobiologistsDrug resistance 10   Metagenomics
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