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Analysis of single cell RNA-seq data (IN PERSON)
12 - 26 September 2022
Cambridge, United Kingdom
Analysis of single cell RNA-seq data (IN PERSON) http://training.csx.cam.ac.uk/bioinformatics/event/4371238 https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-in-person Recent technological advances have made it possible to obtain genome-wide transcriptome data from single cells using high-throughput sequencing (scRNA-seq). Even though scRNA-seq makes it possible to address problems that are intractable with bulk RNA-seq data, analysing scRNA-seq is also more challenging. In this course we will be surveying the existing problems as well as the available computational and statistical frameworks available for the analysis of scRNA-seq. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge Raven account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=4371238&&course-title=Analysis%20of%20single%20cell%20RNA-seq%20data).'' 2022-09-12 08:30:00 UTC 2022-09-26 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Transcriptomics Functional genomics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Using the Ensembl Genome Browser (IN PERSON)
15 September 2022
Cambridge, United Kingdom
Using the Ensembl Genome Browser (IN PERSON) http://training.csx.cam.ac.uk/bioinformatics/event/4379129 https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-in-person The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=4379129&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2022-09-15 08:30:00 UTC 2022-09-15 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Ensembl REST API workshop (IN PERSON)
16 September 2022
Cambridge, United Kingdom
Ensembl REST API workshop (IN PERSON) http://training.csx.cam.ac.uk/bioinformatics/event/4379159 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-in-person The [Ensembl project](http://www.ensembl.org/) provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website. The workshop covers how to use the Ensembl [REST APIs](http://rest.ensembl.org/), including understanding the major endpoints and how to write scripts to call them. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=4379159&course-title=Ensembl%20REST%20API%20Workshop).'' 2022-09-16 08:30:00 UTC 2022-09-16 15:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Bioinformaticians and wet-lab biologists who can programGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK -
Analysis of bulk RNA-seq data (ONLINE LIVE TRAINING)
18 November - 2 December 2022
Cambridge, United Kingdom
Analysis of bulk RNA-seq data (ONLINE LIVE TRAINING) http://training.csx.cam.ac.uk/bioinformatics/event/4373564 https://tess.elixir-europe.org/events/analysis-of-bulk-rna-seq-data-online-live-training-87c663c9-a872-4312-ba6c-7fd5c3034ebc The aim of this course is to familiarize the participants with the primary analysis of RNA-seq data. This course starts with a brief introduction to RNA-seq and discusses quality control issues. Next, we will present the alignment step, quantification of expression and differential expression analysis. For downstream analysis we will focus on tools available through the Bioconductor project for manipulating and analysing bulk RNA-seq. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=4373564&course-title=Analysis%20of%20bulk%20RNA-seq%20data).'' 2022-11-18 09:30:00 UTC 2022-12-02 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data mining Transcriptomics Data visualisation Functional genomics Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
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