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  • Executive Masters in Management of Research Infrastructures

    13 November 2018 - 26 June 2020

    Milan, Italy

    Elixir node event
    Executive Masters in Management of Research Infrastructures https://tess.elixir-europe.org/events/executive-masters-in-management-of-research-infrastructures-12abb26e-f3b7-45ac-92c6-24008017292d This Masters development programme is aimed at current Research Infrastructures managers and leaders who wish to develop the competencies required to meet the needs of Research Infrastructures in the planning, construction and operation phases. 2018-11-13 12:00:00 UTC 2020-06-26 12:00:00 UTC University of Milano-Bicocca, Milan, Italy University of Milano-Bicocca Milan Italy 20126 [] Claire Johnson [] [] [] [] HDRUK
  • Introduction to Genomic Variant Interpretation

    6 - 7 April 2020

    Sheffield, United Kingdom

    Introduction to Genomic Variant Interpretation https://tess.elixir-europe.org/events/introduction-to-genomic-variant-interpretation This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2020-04-06 08:30:00 UTC 2020-04-07 16:00:00 UTC Bartolome House, Seminar Room EG03, Sheffield, United Kingdom Bartolome House, Seminar Room EG03 Sheffield United Kingdom S3 7ND [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Introduction to identifying and characterising somatic variants

    21 April - 21 May 2020

    Sheffield, United Kingdom

    Introduction to identifying and characterising somatic variants https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-somatic-variants-907ec326-e958-4c2e-a935-4780254ae845 This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2020-04-21 08:30:00 UTC 2020-05-21 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • ELIXIR Heads of Nodes Retreat (2020)

    6 - 7 May 2020

    Woking, United Kingdom

    ELIXIR Heads of Nodes Retreat (2020) https://tess.elixir-europe.org/events/elixir-heads-of-nodes-retreat-2020 The ELIXIR Heads of Nodes (HoN) will hold their annual Retreat from 6-7 May 2020 in Woking, UK. A full agenda and documents for this meeting will be made available to meeting participants in due course. Location Set in the Surrey country side, this venue has been chosen as an ideal venue just 30 minutes from central London and 20 minutes from Heathrow and Gatwick Airport. You are encouraged to travel to and from Heathrow Airport. Contacts For all documentation inquiries, please contact: Joana Wingender (joana.wingender@elixir-europe.org) For all logistical inquiries, please contact: Melissa Balzano (melissa.balzano@elixir-europe.org)    2020-05-06 11:00:00 UTC 2020-05-07 15:00:00 UTC The Talbot Inn, Woking, United Kingdom The Talbot Inn Woking United Kingdom GU23 6BB [] [] [] meetings_and_conferences [] []
  • RNA-seq Analysis for Beginners

    13 May 2020

    Sheffield, United Kingdom

    RNA-seq Analysis for Beginners https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners-910fd563-0c77-49c8-9f3a-878af00ba1b9 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2020-05-13 08:30:00 UTC 2020-05-13 16:00:00 UTC Bartolome House, Seminar Room EG03, Sheffield, United Kingdom Bartolome House, Seminar Room EG03 Sheffield United Kingdom S3 7ND [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Mass spectrometry data processing

    2 - 3 June 2020

    Gent, Belgium

    Elixir node event
    Mass spectrometry data processing https://tess.elixir-europe.org/events/mass-spectrometry-data-processing-f80a1c34-fcd4-40bf-83df-1ba4b05dd38e Obtain a good understanding of the origins and properties of mass spec data Obtain an understanding of the processing of mass spec data, aimed at identifying and quantifying peptides and proteins Gain sufficient understanding of the software tools and database used, and of the issues and caveats involved, to critically analyse and assess results from mass spectrometry based proteomics experiments 2020-06-02 09:00:00 UTC 2020-06-03 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052 [] [] [] [] [] []
  • Using MOFA for integration of omics data

    9 June 2020

    Gent, Belgium

    Elixir node event
    Using MOFA for integration of omics data https://tess.elixir-europe.org/events/using-mofa-for-integration-of-omics-data-f849603e-3ab6-453b-b6d4-6d22f3666d6e Participants can bring their own data to the course. What kind of preprocessing of the data is required for MOFA? How to train MOFA on a multi-omic data set? How to interpret the MOFA factors by their loadings, using gene set enrichment or sample ordination? How to use MOFA for downstream analyses including regression, classification or clustering? How to impute missing values with MOFA? How to select the number of factors and compare different MOFA fits? 2020-06-09 09:00:00 UTC 2020-06-09 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052 [] [] [] [] [] []
  • RNA-seq Analysis for Beginners

    3 July 2020

    Sheffield, United Kingdom

    RNA-seq Analysis for Beginners https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners-13c9f173-2fdd-4ea6-9005-58aa798bf289 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2020-07-03 08:30:00 UTC 2020-07-03 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Introduction to RNA-seq analysis in R

    13 - 14 July 2020

    Sheffield, United Kingdom

    Introduction to RNA-seq analysis in R https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-34ffdcbc-a5b7-49ac-afb9-7d338a38ea26 In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2020-07-13 08:30:00 UTC 2020-07-14 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • A tour of machine learning: classification

    31 August - 1 September 2020

    Gent, Belgium

    Elixir node event
    A tour of machine learning: classification https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification-67c1e87f-922a-469a-8aaa-f93f3b51b01b Machine learning has become ubiquitous in biotechnology (as in many other fields), fueled largely by the increasing availability and amount of data. Learning algorithms can figure out how to perform important tasks by generalizing examples. Typical applications are diagnoses/prognoses, gene/protein annotation, drug design, image recognition, text mining and many others. However, building successful machine learning models requires a substantial amount of “black art” that is hard to find in textbooks. This course is an interactive Jupyter Notebook (Python) that will teach you how to build successful machine learning models. No background in machine learning is assumed, just a keen interest. 2020-08-31 09:00:00 UTC 2020-09-01 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052 [] [] [] [] [] []
  • Genome Engineering and Synthetic Biology (4th edition)

    10 - 11 September 2020

    Gent, Belgium

    Elixir node event
    Genome Engineering and Synthetic Biology (4th edition) https://tess.elixir-europe.org/events/genome-engineering-and-synthetic-biology-4th-edition Genome Engineering and Synthetic Biology are revolutionizing Life Sciences. Driven by advances in the CRISPR-toolbox for rapid, cheap, multiplex modification of genomes and breakthroughs in DNA synthesis technologies, the pace of progress enabled by these tools in the last years has been breathtaking. The first three editions (September 2013, January 2016, January 2018) were a roaring success and we are pleased to announce the 4th edition of GESB in beautiful Ghent in September, 2020. Travel Grants We offer 5 travel grants to international attendees, which will reimburse travel costs up to 400 Euros. Are you interested in attending GESB20 and want to have a chance on a travel grant? Submit your motivation below by clicking on the 'Apply for a grant' button before 4 June 2020. The organizing committee will notify you of your travel grant acceptance by the end of June. No registration is needed before submitting a travel grant proposal. When you’re awarded with a travel grant you will receive a practical email containing the next steps. Note that being awarded a travel grant does not mean being registered for the conference. Scroll down to apply for your grant. Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 30 July 2020 • Late Registration: 26 August 2020 • Abstract deadline: 2 July 2020 Speakers: • Edward Lemke - Institute of Molecular Biology (IMB), DE, Johannes Gutenberg University (JGU), DE & EMBL, DE • Sarah Christine Heilshorn - Stanford University, US • Jane Langdale - University of Oxford, UK • George Guo-Qiang Chen - Tsinghua University, CN • Jason Gammack - Inscripta, US • Janice Chen - Mammoth Biosciences, US • Dan Voytas - University of Minnesota, US & Co-Founder & CSO, Calyxt, US • Alexis Komor - University of California, US • Fred Van Ex - Inari Agriculture, BE • Ross Sozzani - NC State Univeristy, US • Bruno Correia - EPFL, CH • Patrick Yizhi Cai - Manchester Institute of Biotechnology, University of Manchester, UK • Tilmann Buerckstuemmer - Aelian Biotechnology, AT • Peter Smibert - New York Genome Center, Techn Innovation lab, US • Tara Deans - University of Utah, US • Jonathan Gootenberg - McGovern Institute, MIT, US • Steve Harvey - CEO Camena Biosciences, UK • Rob Marchmont - VP Sphere Fluidics, UK • Charlie Silver - CEO Mission Bio, US • Bryan Dickinson - The University of Chicago, US • Holger Puchta - Botanical Institute, Karlsruhe Institute of Technology (KIT), DE • Ping-Wei Ho - VIB-KU Leuven Center for Microbiology, BE • And more to come! 2020-09-10 08:00:00 UTC 2020-09-11 18:00:00 UTC VIB De Bijloke, Bijlokekaai 7, 7, Bijlokekaai, Gent, Belgium De Bijloke, Bijlokekaai 7, 7, Bijlokekaai Gent Oost-Vlaanderen Belgium 9000 [] VIB Conferences team - +32(0)92446611 - conferences@vib.be TakaraTwist Bioscience IndustryPhD studentsAcademics 400 meetings_and_conferences [] genome engineeringSynthetic biologycrisprdna synthetistechnologies

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