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22 events found

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  • Metabolomics Data Processing and Data Analysis

    21 October - 15 November 2019

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics Data Processing and Data Analysis https://tess.elixir-europe.org/events/metabolomics-data-processing-and-data-analysis-e8f98f61-45aa-432d-b65a-b94867d6886d This online course explores the tools and approaches that are used to process and analyse metabolomics data. You will investigate the challenges that are typically encountered in the analysis of metabolomics data... 2019-10-21 09:00:00 UTC 2019-11-15 23:59:00 UTC Online, Birmingham, United Kingdom Online Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Basic statistics in R - Leuven

    18 November - 2 December 2019

    Leuven, Belgium

    Elixir node event
    Basic statistics in R - Leuven https://tess.elixir-europe.org/events/basic-statistics-in-r-leuven Get an idea of what R and Rstudio is Use R to handle data: creating, reading, reformatting and writing data Use R to create graphics Use basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis... Write and use R scripts 2019-11-18 09:00:00 UTC 2019-12-02 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Genome Engineering

    19 November 2019

    Leuven, Belgium

    Elixir node event
    Genome Engineering https://tess.elixir-europe.org/events/genome-engineering 2019-11-19 09:00:00 UTC 2019-11-19 00:00:00 UTC VIB Bioinformatics Core Provinciehuis Vlaams-Brabant, Leuven, Belgium Provinciehuis Vlaams-Brabant Leuven Belgium 3010 [] [] [] [] [] []
  • Analysis of 16S rRNA metagenomic experiments

    25 November 2019

    Leuven, Belgium

    Elixir node event
    Analysis of 16S rRNA metagenomic experiments https://tess.elixir-europe.org/events/analysis-of-16s-rrna-metagenomic-experiments Processing and statistical analysis of 16S rRNA metagenomic experiments using R & Lotus pipeline. The following analytical steps from raw data to communicable results will be on the programme: - Preparation of sequencing data, read filtering, data cleaning - Data normalization - Numerical ecology: Clustering, Ordination, Diversity, Modelling - Univariate & Multivariate Statistics - Biological interpretation 2019-11-25 09:00:00 UTC 2019-11-25 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • NeLS hands-on bioinformatics workshop

    27 November 2019

    Oslo, Norway

    NeLS hands-on bioinformatics workshop https://tess.elixir-europe.org/events/nels-hands-on-bioinformatics-workshop We are pleased to announce the seventh in a series of hands-on bioinformatics workshops organised in Oslo by ELIXIR. The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences (NeLS) (nels.bioinfo.no) to store and share data, and to run analyses via customisable genomics pipelines (Galaxy). Together, we will go through a complete RNA sequencing analysis pipeline. 2019-11-27 10:00:00 UTC 2019-11-27 14:00:00 UTC ELIXIR Norway, Oslo node Institute of Informatics, University of Oslo, Ole-Johan Dahls hus, 23B, Gaustadalléen, Oslo, Norway Institute of Informatics, University of Oslo, Ole-Johan Dahls hus, 23B, Gaustadalléen Oslo Oslo kommune Norway RNA-Seq [] [] [] workshops_and_courses [] []
  • Gentle hands-on introduction to Python programming

    9 - 10 January 2020

    Leuven, Belgium

    Elixir node event
    Gentle hands-on introduction to Python programming https://tess.elixir-europe.org/events/gentle-hands-on-introduction-to-python-programming-6124936d-cd9a-431f-b7de-2736a4c81e66 Learning the basics of Python programming: different variables, reading files, writing files, conditional statements Being able to write a basic Python script from scratch 2020-01-09 09:00:00 UTC 2020-01-10 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Software Carpentry

    21 - 22 January 2020

    Norwich, United Kingdom

    Software Carpentry https://tess.elixir-europe.org/events/software-carpentry-e28d91b4-59e7-47d7-a7f0-54b3d09e0172 Our goal is to help scientists become more productive by teaching them basic computing skills like program design, version control, testing and task automation. In this two-day bootcamp, short tutorials will alternate with hands-on practical exercises. Participants will be encouraged both to help one another, and to apply what they have learned to their own research problems during and between sessions. 2020-01-21 09:00:00 UTC 2020-01-22 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk [] PhD studentspost-docspostgrad workshops_and_courses first_come_first_served SoftwareCarpentrypythonUnix Shell
  • NBIS Course: Single cell RNA sequencing analysis course

    27 - 31 January 2020

    Solna, Sweden

    Elixir node event
    NBIS Course: Single cell RNA sequencing analysis course https://tess.elixir-europe.org/events/nbis-course-single-cell-rna-sequencing-analysis-course #training #url: https://nbisweden.github.io/workshop-scRNAseq/ Single cell RNA sequencing analysis course Links:  Course: https://nbisweden.github.io/workshop-scRNAseq/ Registration form: https://forms.gle/6VFVTFep6iYk7wLr9 The first 3 days of the course will cover the basic steps in single cell RNAseq (scRNAseq) processing and data analysis. Topics covered will include: An overview of the current scRNAseq technologies Basic overview of pipelines for processing raw reads into expression values Quality control of scRNAseq data Dimensionality reduction and clustering techniques Data normalization Differential gene expression for scRNAseq data Trajectory analysis Comparison of different analysis pipelines such as Seurat, Scran and Scanpy On the fourth day we offer a “Bring your own data” day where you can analyse your data using the tools that you have discovered during the course, with TAs present to help you run the analyses and discuss your results. If you do not have your own data you can still select a public dataset of interest and analyse during that day. Application deadline -- December 16 Acceptance notification — December 20 contact: education@nbis.se 2020-01-27 09:00:00 UTC 2020-01-31 00:00:00 UTC Solna, Sweden Solna Sweden [] Åsa Björklund - asa.bjorklund@scilifelab.se [] [] [] [] #trainingtraining
  • Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics

    10 - 12 February 2020

    Birmingham, United Kingdom

    Elixir node event
    Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics https://tess.elixir-europe.org/events/multiple-biofluid-and-tissue-types-from-sample-preparation-to-analysis-strategies-for-metabolomics-793294d9-6efa-46db-a619-72bc81d31ac8 This 3-day course provides a theoretical overview and hands-on training to apply multiple sample preparation and UPLC-MS methods to characterise the metabolomes of complex biological samples using the mass spec... 2020-02-10 09:00:00 UTC 2020-02-12 15:30:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to the analysis of NGS data

    10 February 2020

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-29290307-aebd-49d0-89f9-bc31fe089b47 This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Assembly and mapping of NGS data - Supporting IT: Galaxy and GenePattern platform 2020-02-10 09:00:00 UTC 2020-02-10 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Applied Bioinformatics in Life Sciences (3rd edition)

    13 - 14 February 2020

    Leuven, Belgium

    Elixir node event
    Applied Bioinformatics in Life Sciences (3rd edition) https://tess.elixir-europe.org/events/applied-bioinformatics-in-life-sciences-3rd-edition Bioinformatics has quickly become an integral part of life sciences research by enabling innovative computational approaches in an increasingly data-dense environment. Inspired by the sold-out editions in 2016 and 2018, VIB (a non-profit life sciences research institute) is organizing this third edition to highlight recent developments in bioinformatics research, and to showcase its impact in medical, agricultural, and biotechnological research. Nationally and internationally renowned speakers will present recent scientific findings in applied bioinformatics. They will shed light on the future perspectives of their research in the following plenary sessions: - Microbial & plant genomics: from simple to complex - Structural bioinformatics and proteomics - Data integration, machine learning and networks - Single cell bioinformatics Besides an inspiring scientific program, conference participants will have ample networking opportunities during poster sessions and the conference dinner. ### Speaker line-up: - Roser Vento, Sanger Institute, UK - Klaus Mayer, Helmholtz Zentrum München, DE - Thijs Ettema, Wageningen University, NL - Rohit Pappu, Washington University, US - Patrick Aloy, Structural Bioinformatics Lab, IRB Barcelona, ES - Helen Parkinson, EMBL-EBI, UK - Nick Loman, University of Birmingham, UK - Daifeng Wang, Stony Brook University, US - Aedin Culhane, Dana-Farber Cancer Institute & Harvard TH Chan School of Public Health, US - Sushmita Roy, Dept. of Biostatistics and Medical Informatics, Wisconsin Institute for Discovery, University of Wisconsin, US - Olga Vitek, Northeastern University, US - Nikolai Slavov, Northeastern University, US - Evangelia Petsalaki, EMBL-EBI, UK - Ashley Lu, VIB-KU Leuven Center for Brain & Disease Research, BE - Sofia Forslund, Experimental and Clinical Research Centre (ECRC, a joint venture of the Max Delbrück Center for Molecular Medicine and the Charité University Hospital), DE - Laurent Gatto, De Duve Institute – UC Louvain, BE - Erik Garrison, UC Santa Cruz, US ### Travel Grants We offer 5 travel grants to international attendees, which will reimburse travel costs up to 400 Euros. Are you interested in attending ABLS20 and want to have a chance on a travel grant? Submit your motivation below by clicking on the 'Apply for a grant' button before 15 November. The organizing committee will notify you of your travel grant acceptance on 22 November 2019. No registration is needed before submitting a travel grant proposal. When you’re awarded with a travel grant you will receive a practical email containing the next steps. Note that being awarded a travel grant does not mean being registered for the conference. Scroll down to apply for your grant. 2020-02-13 08:00:00 UTC 2020-02-14 18:00:00 UTC VIB Provinciehuis Provincie Vlaams-Brabant Provincieplein 1 3010 Leuven Belgium, Leuven, Belgium Provinciehuis Provincie Vlaams-Brabant Provincieplein 1 3010 Leuven Belgium Leuven Belgium 3010 Genomics Bioinformatics Data integration and warehousing Machine learning VIBKU Leuven conferences@vib.be [] [] 250 meetings_and_conferences [] bioinformaticsgenomicsProteomicsData Integrationmachine learning
  • Hands on introduction to ChIP-seq and ATAC-seq analysis

    17 February 2020

    Leuven, Belgium

    Elixir node event
    Hands on introduction to ChIP-seq and ATAC-seq analysis https://tess.elixir-europe.org/events/hands-on-introduction-to-chip-seq-and-atac-seq-analysis The aim is to: have an understanding of the nature of ChIP-seq and ATAC-seq data perform a complete analysis workflow including QC, read mapping, visualization in a genome browser and peak-calling using command line and open source software for each each step  have an overview of possible downstream analyses perform a motif analysis with online web programs This training does not cover all methods available today. It does not aim at bringing users to a professional NGS analyst level but provides enough information to allow biologists understand what DNA sequencing practically is and to communicate with NGS experts for more in-depth needs. 2020-02-17 09:00:00 UTC 2020-02-17 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Data Carpentry

    3 - 4 March 2020

    Norwich, United Kingdom

    Data Carpentry https://tess.elixir-europe.org/events/data-carpentry-6bde217e-337f-4bea-96f7-e419c62f5fe9 Data Carpentry workshops are for any researcher who has data they want to analyse, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. 2020-03-03 09:00:00 UTC 2020-03-04 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk [] post-docsPhD studentspostgrad workshops_and_courses first_come_first_served Data carpentryCommand lineData analysis
  • VIBes in Biosciences 2020

    11 - 13 March 2020

    Leuven, Belgium

    VIBes in Biosciences 2020 https://tess.elixir-europe.org/events/vibes-in-biosciences-2020 The VIBes in Bioscience PhD conference is an initiative from the Flanders Institute for Biotechnology (VIB) that takes place in Belgium. The organizing committee consists of motivated VIB PhD students, who bring together young and ambitious scientists from all over the globe to enjoy a series of training workshops and a top-quality conference. Selected speakers are renowned in different Life Sciences research fields such as inflammation & immunology, plant biology, cancer biology, structural biology, neuroscience and microbiology. Workshops The Symposium is preceded by half a day of workshops to improve your personal effectiveness, communication skills and awareness on possible career opportunities. We have invited internationally renowned trainers to share their experience and knowledge with you. Note that you need to register separately for the workshops, after registering for the symposium. The number of seats for each workshop is limited, so make sure to choose your two favorite workshops in time. Take a look at the VIBES 2020 workshops program for more info. Travel Grants We offer 50 travel grants to international PhD students, which will reimburse travel costs up to 200 euros. Travel grant awardees will also receive a discount on their registration fee and accommodation will be covered for adjacent nights. Are you interested in attending VIBES2020 and want to have a chance on a travel grant? Submit your motivation below by clicking on the 'Apply for a grant' button before 15 November. The organizing committee will notify you of your travel grant acceptance before 1 December 2019. No registration is needed before submitting a travel grant proposal. When you’re awarded with a travel grant you will receive a practical email containing the next steps. Note that being awarded a travel grant does not equivalate with being registered. Join us for VIBes 2020 and enjoy this historical city with other science lovers! Follow us on Twitter, Instagram and like us on Facebook for the latest developments. Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Travel Grant deadline: 15 November 2019 • Early Bird: 29 January 2020 • Late Registration: 24 February 2020 • Abstract deadline: 16 January 2020 2020-03-11 08:00:00 UTC 2020-03-13 18:00:00 UTC VIB Iers college, 1, Janseniusstraat, Leuven, Belgium Iers college, 1, Janseniusstraat Leuven Belgium VIB conferences@vib.be [] PhD Students 250 meetings_and_conferencesworkshops_and_courses [] life sciencesMicrobiologyNeurosciencestructural biologyCancer BiomarkersImmunologyinflammationplantbiology
  • Basic statistics theory

    17 March 2020

    Leuven, Belgium

    Elixir node event
    Basic statistics theory https://tess.elixir-europe.org/events/basic-statistics-theory-a6ef37b1-5393-4672-b883-a79c57061f13 After this basic statistics theory session, you should be able to: Understand basic statistical concepts and methods for statistical analysis of life sciences data Choose the correct statistical test for analyzing your data Interpret and critically assess the results of basic statistical analyses 2020-03-17 09:00:00 UTC 2020-03-17 00:00:00 UTC VIB Bioinformatics Core Campus Gasthuisberg, Leuven, Belgium Campus Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • Metabolomics with the Q Exactive

    30 March - 1 April 2020

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics with the Q Exactive https://tess.elixir-europe.org/events/metabolomics-with-the-q-exactive-eba04310-9a59-4f5b-9a52-ee37d888cc0c This 3-day course introduces you to using the Q Exactive mass spectrometer in your metabolomics investigations. The course is led by experts in the field of metabolomics and includes lectures, laboratory sessions... 2020-03-30 09:00:00 UTC 2020-04-01 15:45:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolite Identification with the Q Exactive and LTQ Orbitrap Elite

    2 - 3 April 2020

    Birmingham, United Kingdom

    Elixir node event
    Metabolite Identification with the Q Exactive and LTQ Orbitrap Elite https://tess.elixir-europe.org/events/metabolite-identification-with-the-q-exactive-and-ltq-orbitrap-elite-87815650-e41c-4df1-a050-61ef00722504 This 2-day course provides a hands-on approach to teach attendees about the latest techniques and tools available to perform metabolite identification in non-targeted metabolomics studies. The course is led by experts... 2020-04-02 09:00:00 UTC 2020-04-03 17:30:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to Metabolomics for the Microbiologist

    27 - 29 April 2020

    Birmingham, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Microbiologist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-microbiologist-a6738e97-af92-47b2-bbfe-ba5592458700 This three-day course introduces how untargeted metabolomics can be applied to study microbial systems in academic and industrial research. The course provides an overview of the metabolomics pipeline, experimental... 2020-04-27 09:15:00 UTC 2020-04-29 16:00:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics

    23 - 25 September 2020

    Birmingham, United Kingdom

    Elixir node event
    Multiple Biofluid and Tissue Types, From Sample Preparation to Analysis Strategies for Metabolomics https://tess.elixir-europe.org/events/multiple-biofluid-and-tissue-types-from-sample-preparation-to-analysis-strategies-for-metabolomics-7d1a21e4-32f0-4e9a-a67c-32d2932fa6f5 This 3-day course provides a theoretical overview and hands-on training to apply multiple sample preparation and UPLC-MS methods to characterise the metabolomes of complex biological samples using the mass spec... 2020-09-23 09:00:00 UTC 2020-09-25 15:30:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Introduction to Metabolomics for the Microbiologist

    7 - 9 October 2020

    Birmingham, United Kingdom

    Elixir node event
    Introduction to Metabolomics for the Microbiologist https://tess.elixir-europe.org/events/introduction-to-metabolomics-for-the-microbiologist-5b05fb3a-a745-44e2-80ec-b515cec15eee This three-day course introduces how untargeted metabolomics can be applied to study microbial systems in academic and industrial research. The course provides an overview of the metabolomics pipeline, experimental... 2020-10-07 09:15:00 UTC 2020-10-09 16:00:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolomics with the Q Exactive

    2 - 4 November 2020

    Birmingham, United Kingdom

    Elixir node event
    Metabolomics with the Q Exactive https://tess.elixir-europe.org/events/metabolomics-with-the-q-exactive-920cedd9-d06b-4970-9619-562b1e06ae2f This 3-day course introduces you to using the Q Exactive mass spectrometer in your metabolomics investigations. The course is led by experts in the field of metabolomics and includes lectures, laboratory sessions... 2020-11-02 09:00:00 UTC 2020-11-04 15:45:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Metabolite Identification with the Q Exactive and LTQ Orbitrap Elite

    5 - 6 November 2020

    Birmingham, United Kingdom

    Elixir node event
    Metabolite Identification with the Q Exactive and LTQ Orbitrap Elite https://tess.elixir-europe.org/events/metabolite-identification-with-the-q-exactive-and-ltq-orbitrap-elite-46935e8e-1043-4de4-8494-74207989c510 This 2-day course provides a hands-on approach to teach attendees about the latest techniques and tools available to perform metabolite identification in non-targeted metabolomics studies. The course is led by experts... 2020-11-05 09:00:00 UTC 2020-11-06 17:30:00 UTC School of Biosciences - University of Birmingham, Birmingham, United Kingdom School of Biosciences - University of Birmingham Birmingham United Kingdom B15 2TT [] [] [] [] [] []
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