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  • Introduction to Protein Structure Analysis, autumn session

    29 October 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, autumn session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-autumn-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-10-29 09:00:00 UTC 2020-10-29 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Introduction to Protein Structure Analysis, winter session

    30 November 2020 - 19 March 2021

    Ghent, Belgium

    Elixir node event
    Introduction to Protein Structure Analysis, winter session https://tess.elixir-europe.org/events/introduction-to-protein-structure-analysis-winter-session Get to know the data generated from protein structure determination experiments (high-resolution NMR spectroscopy, X-ray crystallography, electron microscopy, ...) and where to get it. Display protein structure data and compare structures, through the use of Yasara. Create high-quality graphical representations of the structures. Calculate the effect of mutations on the stability of your protein. 2020-11-30 09:00:00 UTC 2021-03-19 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • DDA and DIA proteomic analysis in Galaxy

    3 - 4 December 2020

    Ghent, Belgium

    Elixir node event
    DDA and DIA proteomic analysis in Galaxy https://tess.elixir-europe.org/events/label-free-proteomics-data-analysis-in-galaxy At the beginning of the course we will introduce you to the Galaxy platform and teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.  Then, we will dive into proteomic analyses which are split up into two parts. First, we will use MaxQuant to analyze classical proteomic shotgun (label-free data dependent acquisition = DDA) data. MaxQuant is a standalone tool that enables peptide and protein identification as well as quantification.  In the second part we will perform a complete analysis workflow for data independent acquisition (DIA) data using a variety of open-source tools (including diapysef, OpenSwath, Pyprophet, MSstats). This includes generating a peptide library, refining the library and utilizing the library to identify and quantify peptides in DIA data.  2020-12-03 09:00:00 UTC 2020-12-04 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • NGS - Genome variant analysis

    8 - 9 December 2020

    Bern, Switzerland

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-3c6175a8-5953-4030-8caf-ebc32ee36273 This course will take place in Bern with rules complying to the COVID-19 situation (distance and hygiene). 2020-12-08 09:00:00 UTC 2020-12-09 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to Git & GitHub

    10 December 2020

    Ghent, Belgium

    Elixir node event
    Introduction to Git & GitHub https://tess.elixir-europe.org/events/introduction-to-git-github-tbc-autumn Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll work with GitHub (Desktop) and have a look into git on a command-line level.  Introduction, set-up & configurations Working locally: Create a repository, clone, edit, staging commits, commit & push Working with your history & logs Working in a project: Forking, branching & pull requests How to version control your code in Rstudio with GitHub 2020-12-10 09:00:00 UTC 2020-12-10 00:00:00 UTC VIB Bioinformatics Core Clemenspoort Gent, Ghent, Belgium Clemenspoort Gent Ghent Belgium 9000 [] [] [] [] [] []
  • Long-read and RNA

    11 - 12 March 2021

    Bern, Switzerland

    Elixir node event
    Long-read and RNA https://tess.elixir-europe.org/events/long-read-and-rna More information coming soon... 2021-03-11 09:00:00 UTC 2021-03-12 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to R Shiny

    29 March 2021

    Bern, Switzerland

    Elixir node event
    Introduction to R Shiny https://tess.elixir-europe.org/events/introduction-to-r-shiny-7c523dd5-326e-4c63-8885-097e76e33af5 Overview Shiny is an open-source R package that allows building interactive web applications from R, and without knowledge of web-development, enabling data scientists to make their data or analysis interactively explorable and accessible to 2021-03-29 09:00:00 UTC 2021-03-29 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Genome variant analysis

    30 - 31 March 2021

    Bern, Switzerland

    Elixir node event
    NGS - Genome variant analysis https://tess.elixir-europe.org/events/ngs-genome-variant-analysis-65d385b7-2a1d-4b26-a539-5f7e71eacf04 This course will take place in Bern with rules complying to the COVID-19 situation (distance and hygiene). 2021-03-30 09:00:00 UTC 2021-03-31 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • LIPID MAPS Spring School

    12 - 16 April 2021

    Cardiff, United Kingdom

    LIPID MAPS Spring School https://tess.elixir-europe.org/events/lipid-maps-spring-school This Spring School will focus on theoretical and practical aspects of lipidomics, using state-of-the-art approaches. There will be a major focus on the underlying biology and biochemistry of lipids, including their roles in health and disease. There will be 20+ sessions over 5 days, topics include neutral lipids, fatty acids, eicosanoids, sphingolipids, sterols and bile acids. An introduction to MS-based lipidomics will cover all aspects from sample preparation, storage, chromatography, instrumentation, and identification using databases including LIPID MAPS. There will be a dedicated session on novel technologies, such as iKnife, REIMS, imaging, and new standards for quantitation. This will be alongside practical tutorials on software and informatics tools for lipidomics. An introduction into data integration using biostatistics and systems biology, to include lipid 2021-04-12 09:00:00 UTC 2021-04-16 17:00:00 UTC Cardiff University Park Plaza Cardiff, Greyfriars Road, Cardiff, United Kingdom Park Plaza Cardiff, Greyfriars Road Cardiff United Kingdom CF10 3AL [] [] Early Career Researcher [] [] lipidomics
  • First Steps with UNIX in Life Sciences

    3 May 2021

    Bern, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-c676cc79-09c9-4114-903f-4747ab562e6e This course will take place in Bern with rules complying to COVID situation (distances and hygiene). 2021-05-03 09:00:00 UTC 2021-05-03 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • NGS - Quality control, Alignment, Visualisation - streamed

    17 - 19 May 2021

    Bern, Switzerland

    Elixir node event
    NGS - Quality control, Alignment, Visualisation - streamed https://tess.elixir-europe.org/events/ngs-quality-control-alignment-visualisation-streamed This course will take place in Bern with rules complying to COVID situation (distances and hygiene). 2021-05-17 09:00:00 UTC 2021-05-19 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Single-cell Transcriptomics

    15 - 17 June 2021

    Bern, Switzerland

    Elixir node event
    Single-cell Transcriptomics https://tess.elixir-europe.org/events/single-cell-transcriptomics-3ed8f722-6586-4194-baa4-334463d21f87 Overview In contrast to the Bulk RNA sequencing used to quantify the abundance of gene and transcript expression at a whole population level, single-cell RNA sequencing (scRNAseq) allows researchers to study gene expression profile at a single cell 2021-06-15 09:00:00 UTC 2021-06-17 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

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