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  • Linux introduction

    19 February 2018

    Heverlee, Belgium

    Elixir node event
    Linux introduction https://tess.elixir-europe.org/events/linux-introduction-ff23f593-e32b-498e-b282-4a6565d4b61b This course will give a short practical summary of the basic things one needs when using mainly the command line in Linux: Overview and distributions How to start working with Linux Short introduction to Graphical User Interface Command line basics: getting help, useful commands Linux File System: navigating, file paths, file manipulation, disk space, archiving Text editing- Groups, users, security: access rights Process control This course provides several hands-on sessions Detailed time/place info 19/02/2018 - 09.00 - 13.00 2018-02-19 09:00:00 UTC 2018-02-19 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    20 February 2018

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction-209503a0-15c0-43df-92a6-44b6455d04de An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 20/02/2018 - 09.00 - 13.00 2018-02-20 09:00:00 UTC 2018-02-20 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux for HPC

    26 February 2018

    Heverlee, Belgium

    Elixir node event
    Linux for HPC https://tess.elixir-europe.org/events/linux-for-hpc-4478403d-fef5-421a-b3b6-52dc5f3c766b This course will give a more detailed and HPC oriented summary of the basic command line related issues in Linux: Linux shell: features, customizing, environment variables, aliasing Remote GUI connection: transferring files, displaying graphics Short intro to Linux scripting Creating sample PBS scripts for VSC Installing applications: package manager concept, manual installations This course provides several hands-on sessions Detailed time/place info 26/02/2018 - 09.00 - 13.00 2018-02-26 09:00:00 UTC 2018-02-26 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Python for Life Scientists

    26 - 28 February 2018

    Zurich

    Elixir node event
    Python for Life Scientists https://tess.elixir-europe.org/events/python-for-life-scientists-1dca1a76-eb30-49a2-a05e-29fa960e7842 Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2018-02-26 09:00:00 UTC 2018-02-28 00:00:00 UTC SIB, Zurich SIB Zurich [] training@sib.swiss [] [] workshops_and_courses [] []
  • Linux scripting

    27 February 2018

    Heverlee, Belgium

    Elixir node event
    Linux scripting https://tess.elixir-europe.org/events/linux-scripting-c94b6cfe-7c65-4990-8038-bf86a8df2866 This course will give an introduction to Linux scripting with an introduction to the mostly used loops while programming How to create script files in Bash shell- Basic loops in Linux Return values Setting variables Using quotes Command line parameters Introduction to expressions Test conditions Shell logic structures (sequence, decision, loops) Shell functions i/o issues Using Linux scripting in writing PBS scripts for HPC This course provides hands-on sessions Detailed time/place info 27/02/2018 - 09.00 - 13.00 2018-02-27 09:00:00 UTC 2018-02-27 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Remake workshop: Make-like declarative workflows in R

    5 March 2018

    Zurich

    Elixir node event
    Remake workshop: Make-like declarative workflows in R https://tess.elixir-europe.org/events/remake-workshop-make-like-declarative-workflows-in-r Please note that this course is oversubscribed. Overview The R community has developed modern tools that allow implementing computational workflows from data acquisition to report generation entirely in R. 2018-03-05 09:00:00 UTC 2018-03-05 00:00:00 UTC SIB, Zurich SIB Zurich [] training@sib.swiss [] [] workshops_and_courses [] []
  • Introduction to tidyverse R in Leuven

    5 March 2018

    Heverlee, Belgium

    Elixir node event
    Introduction to tidyverse R in Leuven https://tess.elixir-europe.org/events/introduction-to-tidyverse-in-leuven The use of R in the data science field has increased enormously in the last few years. One very useful toolkit for a wide variety of analyses is the ‘tidyverse’: a collection of R-packages used for data manipulation, exploration and visualisation that share a common design philosophy. Tidyverse packages are intended to make statisticians and data scientists more productive by guiding them through workflows that facilitate communication, and result in reproducible work products. This is a four hour workshop, were you will learn: The difference between tidy and untidy data How to create tidy datasets and manipulate them using the main tidyr and dplyr verbs Integrate data visualization into your workflow using ggplot2 Use tidyverse functions to research biological problems   Requirements 2018-03-05 13:00:00 UTC 2018-03-05 17:00:00 UTC ELIXIR Belgium Heverlee Campus. Dept. of Electrical Engineering (ESAT), room B91.200, Heverlee, Belgium Heverlee Campus. Dept. of Electrical Engineering (ESAT), room B91.200 Heverlee Belgium 3001 [] [] [] [] [] []
  • GPU Event

    22 - 23 March 2018

    Heverlee, Belgium

    Elixir node event
    GPU Event https://tess.elixir-europe.org/events/gpu-event GPUs have become an increasingly popular general computing platform.However, their efficient utilization requires some understanding of the architecture and programming model. A sensible question arises about their applicability in terms of the necessary time investment versus the added scientific value.An introduction on the basics of GPGPUs is presented first, including the architecture, the computing model and a general methodology for parallelizing an algorithm.Opportunities and pitfalls are then elucidated with basic examples of problems/implementations suited or unsuited for GPUs. Assessing a problem for its applicability to GPUs is shown as a key decision-making step.The seminar is not only envisioned as an introduction to GPU programming; key concepts are elucidated specifically on a concrete case of Finite Element (FE)algorithm parallelization. Concepts such as problem-breakdown, testing,verification, profiling and optimization are presented through the FE algorithm's implementation.Overall, a realistic assessment of adopting GPU computation (and everything it can entail) is provided through the lens of added scientific value. Detailed time/place info 22/03/2018 - 09.00 - 12.30 22/03/2018 - 13.30 - 17.00 23/03/2018 - 09.00 - 12.30 23/03/2018 - 13.30 - 17.00 2018-03-22 09:00:00 UTC 2018-03-23 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    22 March 2018

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction-7d69d455-d177-42ea-8d16-258b225170d9 An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 22/03/2018 - 09.00 - 13.00 2018-03-22 09:00:00 UTC 2018-03-22 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Debugging techniques

    26 March 2018

    Heverlee, Belgium

    Elixir node event
    Debugging techniques https://tess.elixir-europe.org/events/debugging-techniques This information session starts off by tips on how to avoid bugs, and introduces the concept of assertions and unit tests. In many contexts command line debuggers are the only tool at hand, and the concepts transfer easily to GUI debuggers, so gdb will be taken as an example in a small case study. For debugging parallel code at scale, Allinea Forge’s DDT is introduced. This convenient GUI debugger allows to debug OpenMP, MPI as well as CUDA code. Some use cases for additional tools such as valgrind and strace will be mentioned as well. Detailed time/place info 26/03/2018 - 09.00 - 12.00 2018-03-26 09:00:00 UTC 2018-03-26 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    27 March 2018

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction-0a0e1772-b9d8-4d1f-ab06-1c8ddf763fcd An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 27/03/2018 - 09.00 - 13.00 2018-03-27 09:00:00 UTC 2018-03-27 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux tools

    3 May 2018

    Heverlee, Belgium

    Elixir node event
    Linux tools https://tess.elixir-europe.org/events/linux-tools-6fa2e511-7e70-4895-a6d9-86caa44faa9f This course will give an introduction to several useful Linux tools useful in academic research and everyday use of the system. Brief introduction to script files in Bash shell Using quotes Command line parameters i/o and pipes Useful commands: grep, cut, uniq, tr, sort, join Linux tools: awk, sed Using Linux scripting in writing PBS scripts for HPC This course provides hands-on sessions Detailed time/place info 05/03/2018 - 09.00 - 13.00 2018-05-03 09:00:00 UTC 2018-05-03 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Git for Humans (Leuven)

    20 June 2018

    Heverlee, Belgium

    Elixir node event
    Git for Humans (Leuven) https://tess.elixir-europe.org/events/git-for-humans-ef1cd0f7-1779-4f7f-9db5-b57336debc0a 2018-06-20 13:00:00 UTC 2018-06-20 16:30:00 UTC ELIXIR Belgium Heverlee Campus. Dept. of Electrical Engineering (ESAT), room B01.35, Heverlee, Belgium Heverlee Campus. Dept. of Electrical Engineering (ESAT), room B01.35 Heverlee Belgium 3001 [] [] [] [] [] []
  • qPCR analysis using qbasePLUS

    10 September 2018

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    qPCR analysis using qbasePLUS https://tess.elixir-europe.org/events/qpcr-analysis-using-qbaseplus b'\r\n\r\n\n \r\n\r\n\n \r\n\r\n\n \r\n\r\n\n' 2018-09-10 09:30:00 UTC 2018-09-10 16:30:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • Bioinformatics of long read sequencing

    8 - 9 November 2018

    Zurich, Switzerland

    Elixir node event
    Bioinformatics of long read sequencing https://tess.elixir-europe.org/events/bioinformatics-of-long-read-sequencing Please note that this course is over subscribed. 2018-11-08 09:00:00 UTC 2018-11-09 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Analyzing flow cytometry data using FlowJo

    19 November 2018

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Analyzing flow cytometry data using FlowJo https://tess.elixir-europe.org/events/analyzing-flow-cytometry-data-using-flowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data. \r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multi-platform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 2018-11-19 09:30:00 UTC 2018-11-19 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • SPHN Data Privacy and IT Security Training

    20 November 2018

    Zurich, Switzerland

    Elixir node event
    SPHN Data Privacy and IT Security Training https://tess.elixir-europe.org/events/sphn-data-privacy-and-it-security-training Overview Within the Swiss Personalized Health Network (SPHN) and related national initiatives researchers use patient data (i.e., confidential human data) in their research projects. 2018-11-20 09:00:00 UTC 2018-11-20 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • High Performance Computing for genomic applications

    26 - 27 November 2018

    Zurich, Switzerland

    Elixir node event
    High Performance Computing for genomic applications https://tess.elixir-europe.org/events/high-performance-computing-for-genomic-applications-01f41c8d-a78f-4354-b37c-5a1ec697159b Overview The course "High Performance Computing for genomic applications" is organized for the D-BIOL researchers (including PhD students) by Scientific IT Services on 26-27 November 2018. 2018-11-26 09:00:00 UTC 2018-11-27 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • C introduction

    3 December - 20 March 2018

    Heverlee, Belgium

    Elixir node event
    C introduction https://tess.elixir-europe.org/events/c-introduction-dc19e058-a3d6-4f94-b394-e31e3a993e94 This course will provide the basics on the programming environment. Participants will be able to write small applications themselves as well as understand C programming code. Small examples and hands-on will be used to experiment with the different topics. C History Writing a small C progam, understand the development cycle Preprocessor Assignments, Keywords, Identifiers, Variables Operators Control flow Functions Arrays and structures Pointers Working with files and standard I/O Detailed time/place info 12.03.2018, 09:00-13:00 13.03.2018, 09:00-13:00 19.03.2018, 09:00-13:00 20.03.2018, 09:00-13:00 2018-12-03 09:00:00 UTC 2018-03-20 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Code Optimization

    17 January 2019

    Heverlee, Belgium

    Code Optimization https://tess.elixir-europe.org/events/code-optimization-6d075ecd-6d33-4c77-8aaa-918fe8bfcb3e b'Attention to the quality of code in terms of its computational efficiency is a rather important aspect of using HPC system effectively.In the introduction, we will cover how to quantify performance, and how to dimension computations to ensure optimal use of the compute resources.\n In order to write efficient scientific code, the developer should be familiar with a number of important aspects of modern CPU architecture.The impact of the NUMA memory architecture, vectorization and out-of-order execution will be discussed. The NUMA memory architecture also has its impact at the level of a compute node, while the interconnect properties will determine performance of distributed applications.Several tools will help the developer to profile his application to discover performance hot spots, and make informed decisions on how to improve the efficiency of the code, or the use of resources.\r\n\r\n\r\n \n \n Detailed time/place info\n \r\n \n 17/01/2019 - 09.00 - 13.00\r\n \n' 2019-01-17 09:00:00 UTC 2019-01-17 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Introduction to statistics

    22 - 25 January 2019

    Zurich, Switzerland

    Elixir node event
    Introduction to statistics https://tess.elixir-europe.org/events/introduction-to-statistics-ffd2c538-293c-4e8d-87c5-f3e6801a564e Please note that this course is full. Overview This course is designed to provide researchers in biomedical sciences with experience in the application of basic statistical analysis techniques to a variety of biological problems. 2019-01-22 09:00:00 UTC 2019-01-25 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • R-packaging

    5 February 2019

    Zurich, Switzerland

    Elixir node event
    R-packaging https://tess.elixir-europe.org/events/r-packaging-7d99e72f-ed13-45f7-807c-8903907185c0 This course is full. Overview In this course, R programmers will learn how to create R packages, the best way to make R scripts reusable. Participants will learn how to identify and create clear, clean and usable packages in R. 2019-02-05 09:00:00 UTC 2019-02-05 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Workshop on Computational Biology at biology'19

    6 February 2019

    Zurich, Switzerland

    Elixir node event
    Workshop on Computational Biology at biology'19 https://tess.elixir-europe.org/events/workshop-on-computational-biology-at-biology-19 Overview SIB is co-organizing a workshop on computational biology on 6 Feb 2019 in Zurich, as a satellite event to Biology 2019, the annual Swiss conference on ecology, evolution, systematics and conservation. 2019-02-06 09:00:00 UTC 2019-02-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Analyzing flow cytometry data in FlowJo

    25 February 2019

    Ghent (Sint-Denijs-Westrem), Belgium

    Elixir node event
    Analyzing flow cytometry data in FlowJo https://tess.elixir-europe.org/events/analyzing-flow-cytometry-data-in-flowjo b'Learn researchers how to analyze flow cytometry data in an efficient way using FlowJo v10,the world’s nr.1 analysis software tool for flow cytometry data.\r\n\n FlowJo version10 is a newly designed version of the famous FlowJo software. In contrast with previous versions (iOS only), version 10 is now a multi-platform software tool (Windows, iOS, Linux). It now has a very intuitive user interface designed to analyze your data in a very practical and fast way.\r\n\n Prior knowledge in general flow cytometry is required but the general principles will be repeated\r\n\n' 2019-02-25 09:30:00 UTC 2019-02-25 17:00:00 UTC VIB Bioinformatics Core Holiday Inn Gent Expo, Ghent (Sint-Denijs-Westrem), Belgium Holiday Inn Gent Expo Ghent (Sint-Denijs-Westrem) Belgium 9051 [] [] [] [] [] []
  • Introduction to R Shiny

    6 May 2019

    Zurich, Switzerland

    Elixir node event
    Introduction to R Shiny https://tess.elixir-europe.org/events/introduction-to-r-shiny This course is over subscribed. You can still add your name to the waiting list by applying using the button at the bottom of this page. You will only be contacted if a place becomes available. 2019-05-06 09:00:00 UTC 2019-05-06 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR-SIB Data Carpentry with R - Genomics curriculum

    1 - 2 July 2019

    Zurich, Switzerland

    Elixir node event
    ELIXIR-SIB Data Carpentry with R - Genomics curriculum https://tess.elixir-europe.org/events/elixir-sib-data-carpentry-with-r We are sorry but this course is oversubscribed, with a long waiting list. Keep an eye in our distribution list (sign in here) for the announcements of future courses. 2019-07-01 09:00:00 UTC 2019-07-02 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Integrative X-omics analyses empowering personalized healthcare

    1 - 5 July 2019

    Nijmegen, Netherlands

    Elixir node event
    Integrative X-omics analyses empowering personalized healthcare https://tess.elixir-europe.org/events/integrative-x-omics-analyses-empowering-personalized-healthcare In this course you will receive high profile lectures and practical training on the integrated use of molecular-omics technologies in personalized prevention, diagnostics and treatment, to optimize your experimental and analysis strategies. Molecular indicators for health, disease and response to… The post Integrative X-omics analyses empowering personalized healthcare appeared first on Dutch Techcentre for Life Sciences. 2019-07-01 09:00:00 UTC 2019-07-05 00:00:00 UTC Nijmegen, Netherlands, Nijmegen, Netherlands Nijmegen, Netherlands Nijmegen Netherlands [] [] [] workshops_and_courses [] []
  • Good practice in high-throughput experiments

    30 September - 1 October 2019

    Zurich, Switzerland

    Elixir node event
    Good practice in high-throughput experiments https://tess.elixir-europe.org/events/good-practice-in-high-throughput-experiments Overview This course offers an overview of good practice in high-throughput experiments (e.g. next-generation sequencing or compound screening). Particularly we focus on pitfalls in the design of projects (e.g. 2019-09-30 09:00:00 UTC 2019-10-01 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Advanced R Shiny

    5 December 2019

    Zurich, Switzerland

    Elixir node event
    Advanced R Shiny https://tess.elixir-europe.org/events/advanced-r-shiny More information coming up 2019-12-05 09:00:00 UTC 2019-12-05 00:00:00 UTC SIB, Zurich, Switzerland SIB Zurich Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
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