Analysis of single cell RNA-Seq data from 10x Genomics
29 - 30 August 2019
Gent, BelgiumAnalysis of single cell RNA-Seq data from 10x Genomics https://training.vib.be/product/116 https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-from-10x-genomics-5360606b-8116-48e6-929f-5e3b1bd1de5b In this course we will discuss some of the advantages and pitfalls of scRNA-Seq and go through the whole scRNA-seq analysis pipeline. We will teach you how to do proper quality control and filtering on gene level and cell level, how to do create tSNE plots, how to get potential markers for a subset of cells ... 2019-08-29 09:00:00 UTC 2019-08-30 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052      
FLAMES Summer School
9 - 20 September 2019
Gent, BelgiumFLAMES Summer School https://www.flames-statistics.com/summer-school/ https://tess.elixir-europe.org/events/flames-summer-school FLAMES (Flanders Training Network for Methodology and Statistics) organizes a two-week Summer School aiming at providing practical methodological and statistical training to young researchers (particularly PhD students) from all disciplines. After the success of the FLAMES Summer School in 2013 (at KULeuven), 2014 (at UGent), 2015 (at VUB), 2016 (at UHasselt) , 2017 (at UAntwerp) and 2018 (at KULeuven) we are going to offer and even broader variety of courses from top lecturers around the world. Whether you are a complete dummy, a starter with a limited knowledge, or a more experienced researcher with a broad basic knowledge in the world of methodology and statistics, the FLAMES summer school offers courses at your level, which emphasizes everyday research practice. The program consists of 23 courses (called modules) from which participants can choose. Each module seamlessly connects theory with hands-on exercises or lab sessions, focusing on various disciplines and software packages whenever possible. The basic courses are combined in 2 recommended tracks, that directly connect to the prior knowledge of the participant. This year the FLAMES Summer School will take place at Gent University, De Sterre. 2019-09-09 09:00:00 UTC 2019-09-20 17:00:00 UTC Krijgslaan 281, Gent, Belgium Krijgslaan 281 Gent Oost-Vlaanderen Belgium Ghent University firstname.lastname@example.org   workshops_and_courses registration_of_interest 
4th Disease Maps Community Meeting - DMCM2019
2 - 4 October 2019
Sevilla, Spain4th Disease Maps Community Meeting - DMCM2019 http://disease-maps.org/DMCM2019 https://tess.elixir-europe.org/events/4th-disease-maps-community-meeting-dmcm2019 The [4th Disease Maps Community Meeting] (http://disease-maps.org/DMCM2019) is hosted by the [Clinical Bioinformatics Area] (http://www.clinbioinfosspa.es/), FPS, Hospital Virgen del Rocio. **Invited Talks** * _Schizophrenia Map: Data to knowledge to data_ **Jessica Dale Tenenbaum**, Duke University at Durham, North Carolina, USA * _Logic modeling to integrate disease maps and various omics data_ **Julio Saez-Rodriguez**, RWTH-Aachen University Hospital, Aachen, Germany * _Toward whole-cell computational models for precision medicine_ **Jonathan Karr**, Icahn School of Medicine at Mount Sinai, New York, USA * _Computational approaches to tackle chemoresistance in high-grade serous ovarian cancer_ **Sampsa Hautaniemi**, Faculty of Medicine, University of Helsinki, Finland **Afternoon discussion sessions** Afternoon breakout discussion sessions are planned following the example of the 2nd Disease Maps Community Meeting in Luxembourg. We invite proposals: a title and a brief description of the topic (1 page maximum). 4-6 topics will be selected, introduced 2nd October and discussed 3rd and 4th October with summaries presented at the end to all the participants. **Abstract subimission and registration** http://disease-maps.org/DMCM2019 2019-10-02 09:30:00 UTC 2019-10-04 13:30:00 UTC Disease Maps Project Centro de Documentación Clínica Avanzada, s/n, Avda de Manuel Siurot, Sevilla, Spain Centro de Documentación Clínica Avanzada, s/n, Avda de Manuel Siurot Sevilla Spain 41013 Systems medicine Translational medicine Bioinformatics Fundación Progreso y Salud (FPS)Hospital Virgen del Rocio email@example.com   meetings_and_conferences  BioinformaticsClinical BioinformaticsDiseasesDisease mapsTranslational Bioinformaticssystems medicine
NETTAB/BBCC 2019 Joint Meeting
11 - 14 November 2019
Fisciano, ItalyNETTAB/BBCC 2019 Joint Meeting https://www.elixir-europe.org/events/nettabbbcc-2019-joint-meeting https://tess.elixir-europe.org/events/nettab-bbcc-2019-joint-meeting In 2019 two international conferences: NETTAB (http://www.nettab.org/), now in its 19th edition, and BBCC (https://www.bbcc-meetings.it/), now in its 14th edition (3rd international), are joining forces to offer an event that will attract the local, Italian and international bioinformatics community. This event will take place over three days and will include sessions on topics of biomedical interest. A special session will be devoted to "Computational Proteomics", supported by the ELIXIR Proteomics Community. 2019-11-11 09:00:00 UTC 2019-11-14 17:00:00 UTC University of Salerno, Fisciano, Italy University of Salerno Fisciano Italy 84084      
A tour of machine learning: classification
13 - 14 January 2020
Gent, BelgiumA tour of machine learning: classification https://training.vib.be/product/136 https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification-b217275f-0a31-4994-b5c6-be3d999cc9f7 Machine learning has become ubiquitous in biotechnology (as in many other fields), fueled largely by the increasing availability and amount of data. Learning algorithms can figure out how to perform important tasks by generalizing examples. Typical applications are diagnoses/prognoses, gene/protein annotation, drug design, image recognition, text mining and many others. However, building successful machine learning models requires a substantial amount of “black art” that is hard to find in textbooks. This course is an interactive Jupyter Notebook (Python) that will teach you how to build successful machine learning models. No background in machine learning is assumed, just a keen interest. 2020-01-13 09:00:00 UTC 2020-01-14 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052      
Mass spectrometry data processing
2 - 3 June 2020
Gent, BelgiumMass spectrometry data processing https://training.vib.be/product/135 https://tess.elixir-europe.org/events/mass-spectrometry-data-processing-f80a1c34-fcd4-40bf-83df-1ba4b05dd38e Obtain a good understanding of the origins and properties of mass spec data Obtain an understanding of the processing of mass spec data, aimed at identifying and quantifying peptides and proteins Gain sufficient understanding of the software tools and database used, and of the issues and caveats involved, to critically analyse and assess results from mass spectrometry based proteomics experiments 2020-06-02 09:00:00 UTC 2020-06-03 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052      
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