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17 events found

City: Esch-sur-Alzette  or Niel  or Edgbaston  or Harpenden  or Bielefeld 

  • SYSMED 2013 Summer School

    10 - 11 June 2013

    Esch-sur-Alzette, Luxembourg

    SYSMED 2013 Summer School https://tess.elixir-europe.org/events/sysmed-2013-summer-school 2013-06-10 09:00:00 UTC 2013-06-11 00:00:00 UTC LCSB/SBI Esch-sur-Alzette, Luxembourg Esch-sur-Alzette Luxembourg Systems biology Proteomics Genomics [] [] [] workshops_and_courses [] []
  • 2nd International Systems Biomedicine Symposium

    21 - 22 October 2013

    Esch-sur-Alzette, Luxembourg

    2nd International Systems Biomedicine Symposium https://tess.elixir-europe.org/events/2nd-international-systems-biomedicine-symposium 2013-10-21 01:00:00 UTC 2013-10-22 01:00:00 UTC University of Luxembourg Esch-sur-Alzette, Luxembourg Esch-sur-Alzette Luxembourg Systems biology Medicine Bioinformatics [] [] [] meetings_and_conferences [] []
  • The Big Freeze

    6 - 11 April 2014

    Harpenden, United Kingdom

    The Big Freeze https://tess.elixir-europe.org/events/the-big-freeze 2014-04-06 01:00:00 UTC 2014-04-11 01:00:00 UTC RMS Harpenden, United Kingdom Harpenden United Kingdom Systems biology [] [] [] workshops_and_courses [] []
  • The German Conference on Bioinformatics

    28 September - 1 October 2014

    Bielefeld, Germany

    The German Conference on Bioinformatics https://tess.elixir-europe.org/events/the-german-conference-on-bioinformatics 2014-09-28 01:00:00 UTC 2014-10-01 01:00:00 UTC Bielefeld University Bielefeld, Germany Bielefeld Germany Bioinformatics [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • Ensembl browser workshops – Rothamsted May 2016

    18 - 19 May 2016

    Harpenden, United Kingdom

    Elixir node event
    Ensembl browser workshops – Rothamsted May 2016 https://tess.elixir-europe.org/events/ensembl-browser-workshops-rothamsted-may-2016 Work with the Ensembl Outreach team to get to grips with the Ensembl Genomes browsers, accessing gene, variation and comparative genomics data, and mine these data with BioMart. 2016-05-18 09:00:00 UTC 2016-05-19 17:00:00 UTC Rothamsted Research, Harpenden, United Kingdom Rothamsted Research Harpenden United Kingdom AL5 2JQ [] Emily Perry [] [] [] [] HDRUK
  • eTRIKS/ELIXIR-LU data curation training for tranSMART

    15 - 16 September 2016

    Esch-sur-Alzette, Luxembourg

    eTRIKS/ELIXIR-LU data curation training for tranSMART https://tess.elixir-europe.org/events/etriks-elixir-lu-data-curation-training-for-transmart eTRIKS and ELIXIR-Luxembourg Node organize a data preprocessing and curation training that will cover the necessary steps to clean, reformat and upload data to a data integration platform "tranSMART". The training will be divided in the following sections: 1) Basic introduction of tranSMART (i2b2 tree and database) 2) Format of standard-format-file that are needed by the ETL scripts 3) How to setup the data loading environment 4) How to use the ETL scripts 5) Hand-on sessions of 2) 3) and 4) 2016-09-15 14:00:00 UTC 2016-09-16 15:00:00 UTC ELIXIR-Luxembourg Node ELIXIR-Luxembourg Node: LCSB, Université de Luxembourg - Campus Belval (Biotech II), 6 Avenue du Swing, Esch-sur-Alzette, Luxembourg ELIXIR-Luxembourg Node: LCSB, Université de Luxembourg - Campus Belval (Biotech II), 6 Avenue du Swing Esch-sur-Alzette Luxembourg L-4362 [] eTRIKS Consortium ELIXIR-Luxembourg Node [] [] [] []
  • Data processing with R tidyverse

    19 - 22 February 2018

    Esch-sur-Alzette, Luxembourg

    Data processing with R tidyverse https://tess.elixir-europe.org/events/data-processing-with-r-tidyverse This four day course provides a complete introduction to data science in R with the tidyverse. Participants should have basic experience in programming environments such as Matlab, Octave or other programming languages or complete a simple free online course as this one offered by DataCamp. The course will not go deep into statistics but rather getting data ready, some exploratory analysis, visualization and handling models. Preparing data takes up to 90% of the time spent in analysis — speeding this up is the mission of this course. Day 1 will review the basics of R and loading data via the readr package as well as Markdown. Day 2 will introduce tidying and organising data via the tidyr and dplyr packages as well as ggplot2 for visualisation. Day 3 will look at functional programming tools using the purrr package, which greatly simplifies repeating operations. Many statistical packages have complicated and idiosyncratic data structures. The broom package helps to convert them to consistent data structures. Participants are encouraged to bring their own data for analysis, convert existing code to tidyverse or perform a project on Day 4. Speakers: Aurélien GINOLHAC (LSRU, University of Luxembourg), Eric KONCINA (LSRU, University of Luxembourg), Roland KRAUSE (ELIXIR-LU/LCSB, University of Luxembourg) Registration is now open and will close on January 8th, 2018. 2018-02-19 09:30:00 UTC 2018-02-22 18:00:00 UTC ELIXIR Luxembourg University of Luxembourg, Campus, Belval, Maison du Savoir (MSA), Esch-sur-Alzette, Luxembourg University of Luxembourg, Campus, Belval, Maison du Savoir (MSA) Esch-sur-Alzette Luxembourg L-4366 Data architecture, analysis and design Data visualisation University of Luxembourg Roland Krause, ELIXIR-LU [] [] workshops_and_courses first_come_first_served []
  • Data processing with R tidyverse

    14 - 17 May 2019

    Esch-sur-Alzette, Luxembourg

    Data processing with R tidyverse https://tess.elixir-europe.org/events/data-processing-with-r-tidyverse-7eaa0e9d-7b8d-4dc3-9fb0-5d766e8bfe8f R is a powerful language for data science in many disciplines of research with a steep learning curve. The tidyverse group of packages provide a dialect that greatly simplifies data importing, cleaning, processing, and visualization as well as providing reproducible workflows, replacing many intricacies of R with clear and easy to learn syntax. 2019-05-14 09:00:00 UTC 2019-05-17 17:00:00 UTC MSA 4.510, Esch-sur-Alzette, Luxembourg MSA 4.510 Esch-sur-Alzette Luxembourg University of Luxembourg roland.krause@elixir-luxembourg.org [] Researchers 25 workshops_and_courses registration_of_interest Data analysis R-programming
  • Helis Academy Course: FAIR Data Stewardship – digital data scholarship for wetlab scientists

    27 - 29 May 2019

    Niel, Belgium

    Elixir node event
    Helis Academy Course: FAIR Data Stewardship – digital data scholarship for wetlab scientists https://tess.elixir-europe.org/events/helis-academy-course-fair-data-stewardship-digital-data-scholarship-for-wetlab-scientists-48a399b8-7d82-4920-b1a8-19277b0e84cd 2019-05-27 09:00:00 UTC 2019-05-29 00:00:00 UTC VIB Bioinformatics Core Darwin Incubator Niel, Niel, Belgium Darwin Incubator Niel Niel Belgium 2845 [] [] [] [] [] []
  • Helis Academy Course: Omics data analysis through data integration – using biological pathways, networks, and linear models

    11 - 14 June 2019

    Niel, Belgium

    Elixir node event
    Helis Academy Course: Omics data analysis through data integration – using biological pathways, networks, and linear models https://tess.elixir-europe.org/events/helis-academy-course-omics-data-analysis-through-data-integration-using-biological-pathways-networks-and-linear-models The first Helis Academy Omics Data Analysis course is a collaborative effort between Maastricht University and VIB in which you will learn about transcriptomics data analysis and multi-omics data integration. We will begin the course addressing how you obtain published… The post Helis Academy Course: Omics data analysis through data integration – using biological pathways, networks, and linear models appeared first on Dutch Techcentre for Life Sciences. 2019-06-11 09:00:00 UTC 2019-06-14 00:00:00 UTC Niel, Belgium, Niel, Belgium Niel, Belgium Niel Belgium [] [] [] workshops_and_courses [] []
  • Helis Academy Course: Omics data analysis through data integration - using biological pathways, networks, and linear models

    11 - 14 June 2019

    Niel, Belgium

    Elixir node event
    Helis Academy Course: Omics data analysis through data integration - using biological pathways, networks, and linear models https://tess.elixir-europe.org/events/helis-academy-course-omics-data-analysis-through-data-integration-using-biological-pathways-networks-and-linear-models-cfef236a-ccff-4105-873e-902880466734 Below you can find a tentative schedule which will be finetuned before the event. 2019-06-11 09:00:00 UTC 2019-06-14 00:00:00 UTC VIB Bioinformatics Core Darwin Incubator Niel, Niel, Belgium Darwin Incubator Niel Niel Belgium 2845 [] [] [] [] [] []
  • Metabolomics: Understanding Metabolism in the 21st Century

    23 September - 18 October 2019

    Edgbaston, United Kingdom

    Elixir node event
    Metabolomics: Understanding Metabolism in the 21st Century https://tess.elixir-europe.org/events/metabolomics-understanding-metabolism-in-the-21st-century-8c9cebe4-268d-4e19-9073-3a9d99e51df5 This online course explores metabolomics, an emerging field that aims to measure the complement of metabolites (the metabolome) in living organisms. The metabolome represents the downstream effect of an organism's... 2019-09-23 09:00:00 UTC 2019-10-18 23:59:00 UTC Online, Edgbaston, United Kingdom Online Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • de.NBI - CeBiTec Nanopore Best Practice Workshop 2019

    25 - 27 September 2019

    Bielefeld, Germany

    de.NBI - CeBiTec Nanopore Best Practice Workshop 2019 https://tess.elixir-europe.org/events/de-nbi-cebitec-nanopore-best-practice-workshop-2019 de.NBI - CeBiTec Nanopore Best Practice Workshop 2019 Bielefeld Educators: Stefan Albaum, Sebastian Jünemann, Nils Kleinbölting, Alexander Sczyrba (BiGi), Daniel Wibberg (CAU), Björn Usadel (GCBN), Christian Rückert, Jörn Kalinowski (CeBiTec) Date: 25 - 27 September 2019 Location: Bielefeld University, Universitätsstraße 25, 33615 Bielefeld Content: Aim of this workshop is to familiarise the participants with the Nanopore sequencing technology, its applications and the "Best Practice" bioinformatics workflow. The Nanopore technology have greatly facilitated the assembly of prokaryotic and eukaryotic genomes. Therefore, the workshop is focused on the establishment of finalized genome sequences. This workshop will be composed of different talks including introductions to the Nanopore sequencing technology and working in the de.NBI cloud as well as different hands-on sessions. During the talks, the advantages and pitfalls of Nanopore sequencing will be discussed. The hands-on sessions will illustrate the typical workflow from the Nanopore sequencing to the final assembled genome. Learning goals: This workshop aims to teach basic skills and best practices to researchers working with Nanopore data. The final goal is to enable them to use the resulting reads for a de novo assembly. Prerequisites: This workshop is intended for PhD students and postdocs with molecular biology background in genomics. Good understanding of command line tools is a plus, but not required. Tool: Canu, Pilon, Albacore, Porechop, Metricor, Poretools Keywords: Nanopore sequencing, genome assembly, genomics 2019-09-25 09:00:00 UTC 2019-09-27 17:00:00 UTC de.NBI / CeBiTec Bielefeld, Bielefeld, Germany Bielefeld Bielefeld Detmold Germany [] [] [] [] [] []
  • 4th de.NBI Training Course on Metagenome Analysis

    9 - 11 October 2019

    Bielefeld, Germany

    4th de.NBI Training Course on Metagenome Analysis https://tess.elixir-europe.org/events/4th-de-nbi-training-course-on-metagenome-analysis Educators: Sebastian Jünemann (Bielefeld University), Dr. Alex Sczyrba (Bielefeld University), Sebastian Jaenicke (Giessen University), Nils Kleinboelting (Bielefeld University) Location: Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Room V6-113 Date: October the 9th to 11th, 2019 Content: The aim of this 3-day workshop will be to give students a brief overview of the tools and bioinformatics techniques available for the analysis of next generation sequence (NGS) data from microbial communities. The format will comprise a mixture of lectures and hands-on tutorials where students will process example data sets in real-time in the de.NBI cloud environment. After covering general aspects of sequence based analysis (e.g. pre-processing, quality measurements, error handling, and so on) the course is divided into two parts: targeted (16S rRNA gene amplicons) and untargeted (whole-genome shotgun; WGS) metagenome analysis. On demand, a compact introduction into the Linux operating system and the usage of the command line interface will be given upstream to the introducing part to guarantee a consistent baseline for the following lectures. The main aspects of the 16S part are the common pipeline steps beginning with pre-processing and filtering followed by OTU clustering, taxonomic classification, and different statistical measurements. Then, the new ASV/zOTU approach will be introduced followed by similar statistics and both approaches discussed with the attendants in conclusion. In the third part, advantages and disadvantages of whole metagenome sequencing will be illustrated. As WGS metagenomics has the potential to address the full spectra of genome-based issues, the focus here will be on taxonomic and functional analysis with the aid of different bioinformatic tools. Two different techniques to analyze WGS metagenome data are part of this section: (1) in the read-based approach the software solution MGX, an integrated platform for metagenome analysis and data visualization, will be demonstrated. (2) the assembly-based approach to potentially recover near-complete genome by assembling reads into contigs which are subject to binning methods to group individual contigs into genome bins. Prerequisites: - basic knowledge in microbiology and NGS-based analysis - practical experience in a Linux/Unix derivatives, the command line interface and file system required Prerequisites for the workshop plus the optional Linux introduction: - basic knowledge in microbiology and NGS-based analysis Please not that participation to this course does not depend on the actual Linux experience of the applicant. Both, experienced as well as inexperienced Linux users are encouraged to submit an application. However, the Linux introducing session in the morning of the first day is optional only for applicants fulfilling the Linux prerequisite. Application: Please send your application to denbi-courses@cebitec.uni-bielefeld.de (subject MG­course2019) including a short motivation, a few words about your background, your level of experience on the command line (Linux/Unix), and your experience within the field of metagenomic analysis and related bioinformatic tools. There will be no participation fee, yet travel and accommodation expenses need to be paid by the participants. 2019-10-09 09:00:00 UTC 2019-10-11 17:00:00 UTC de.NBI Bielefeld, Bielefeld, Germany Bielefeld Bielefeld Detmold Germany [] [] [] workshops_and_courses [] metagenomics
  • 12th ELIXIR Board meeting (Harpenden, UK)

    18 - 19 November 2019

    Harpenden, United Kingdom

    12th ELIXIR Board meeting (Harpenden, UK) https://tess.elixir-europe.org/events/elixir-board-meeting-harpenden-uk The twelth ELIXIR Board meeting will take place from 18-19 November 2019 in Harpenden, UK. This meeting is open to the ELIXIR Board and Observers only. Agenda items and meeting documentation will be made available to Board members in due time. Please send any inquiries regarding the ELIXIR Board meeting to info@elixir-europe.org. 2019-11-18 09:00:00 UTC 2019-11-19 00:00:00 UTC Harpenden, Harpenden, United Kingdom Harpenden Harpenden Hertfordshire United Kingdom [] [] [] meetings_and_conferences [] []
  • Train the Trainer Workshop

    12 - 13 December 2019

    Esch-sur-Alzette, Luxembourg

    Train the Trainer Workshop https://tess.elixir-europe.org/events/train-the-trainer-workshop 2019-12-12 09:00:00 UTC 2019-12-13 17:00:00 UTC Elixir-Luxembourg Luxembourg Learning Centre University of Luxembourg, Esch-sur-Alzette, Luxembourg Luxembourg Learning Centre University of Luxembourg Esch-sur-Alzette Luxembourg 4367 Bioinformatics University of Luxembourg roland.krause@elixir-luxembourg.org [] ResearchersTrainersTraining instructorsTraining Designers 20 workshops_and_courses registration_of_interest Train the trainer
  • Introduction to Research Data Management

    28 - 30 June 2022

    Esch-sur-Alzette

    Elixir node event
    Introduction to Research Data Management https://tess.elixir-europe.org/events/introduction-to-research-data-management-getting-started-with-data-management-and-data-stewardship This introductory course is aimed at starting PhD candidates, researchers and data stewards in the biomedical sciences who wish to acquire fundamental skills on data management. In addition to lectures, our workshop includes several hands-on practicals, all following one example research data management scenario. The course touches upon all stages of data research lifecycle with emphasis on data management planning, data protection and GDPR compliance, research analyses and reproducibility, FAIR principles and data publication. Please register via ELIXIR Luxembourg website: https://elixir-luxembourg.org/events/2022_06_27_research_data_management 2022-06-28 12:45:00 UTC 2022-06-30 12:15:00 UTC Luxembourg Centre for Systems Biomedicine LCSB BioCore meeting room, 4th floor, BTL Rouden Eck, 1 Boulevard du Jazz, 4370 Esch-sur-Alzette, Luxembourg, Esch-sur-Alzette LCSB BioCore meeting room, 4th floor, BTL Rouden Eck, 1 Boulevard du Jazz, 4370 Esch-sur-Alzette, Luxembourg Esch-sur-Alzette Luxembourg 4370 Luxembourg Centre for Systems Biomedicine vilem.ded@uni.lu [] PhD students workshops_and_courses first_come_first_served Data ProtectionReproducibilityDatastewardshipData management plandata publication

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