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  • EMBL-EBI: Introduction to ontologies

    4 November 2015

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to ontologies https://tess.elixir-europe.org/events/embl-ebi-introduction-to-ontologies This workshop will give an introduction to the basic concepts of ontologies and how they are useful in biological applications. After a brief overview of some existing resources, we will focus on the Gene Ontology, annotations made using the Gene Ontology and tools leveraging those for biomedical discovery. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=bioinfo-onto_EMBL-EBI:%20Introduction%20to%20ontologies_4.11.2015_1555216&CourseName=EMBL-EBI:%20Introduction%20to%20ontologies&CourseDate=4.11.2015&CourseDuration=1&EventID=1555216).'' 2015-11-04 09:30:00 UTC 2015-11-04 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who wish to understand why data standards are important and how they can be used in practiceGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological Imaging Data Management for Life Scientists

    14 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists-eb567418-c2a4-45dc-8363-1778a4bc4b13 [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of analysis tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Management for Facility Managers. More information on this event are available [here](http://www.training.cam.ac.uk/bioinformatics/event/1769270). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20imaging%20data%20management%20for%20life%20scientists_bioinfo-omerols_14.07.2016_1769278&CourseName=Biological%20imaging%20data%20management%20for%20life%20scientists&CourseDate=14.07.2016&CourseDuration=1&EventID=1769278).'' 2016-07-14 08:30:00 UTC 2016-07-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • EMBL-EBI: Introduction to ontologies

    27 January 2017

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Introduction to ontologies https://tess.elixir-europe.org/events/embl-ebi-introduction-to-ontologies-51eb70ed-e622-4bf1-b767-54b36cb7408b This workshop will give an introduction to the basic concepts of ontologies and how they are useful in biological applications. The workshop will have three sections: * A brief, practical introduction to ontologies and semantics * Focus on Gene Ontology (GO), annotations made using GO and tools leveraging those annotations for biomedical discovery. * A practical exercise in annotating data with ontologies using EBI tools. A standard annotation exercise will be provided, but attendees are encouraged to bring examples of their own data for annotation, preferably in spreadsheet form. Also note: This event is part of a series of short introductions focusing on EMBL-EBI resources. If you want to learn more about these separate training events, see the Related Courses section below. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1980360&course-title=EMBL-EBI:%20Introduction%20to%20ontologies).'' 2017-01-27 14:00:00 UTC 2017-01-27 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] This workshop is aimed at researchers who wish to understand why data standards are important and how they can be used in practiceGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Biological Imaging Data Management for Life Scientists

    7 December 2017

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of processing tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Processing for Data Scientists. More information on this event are available [here](https://training.csx.cam.ac.uk/bioinformatics/event/2280783). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2239247&course-title=Biological%20imaging%20data%20management%20for%20life%20scientists).'' 2017-12-07 09:30:00 UTC 2017-12-07 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Train the Trainer for Image Analysts

    30 - 31 May 2019

    Cambridge, United Kingdom

    Elixir node event
    Train the Trainer for Image Analysts https://tess.elixir-europe.org/events/train-the-trainer-ace57510-4abc-42c3-942a-fe1b145ea9ad This course aims to provide trainers with guidance and tips for developing and delivering training in image analysis, exploring a range of methods appropriate to different learning styles and examining the requirements for a successful course (both scientific and logistic). The first part of the course will give participants principles of training theory and best practises for developing and delivering their future training content; the second part will be a hackathon to kick start the development of a common set of training materials in image analysis. This event is organized in collaboration with the [Image Analysis Focused Interest Group](http://iafig-rms.org/) and is supported by the [Royal Microscopical Society](https://www.rms.org.uk/). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2956475&course-title=Train%20the%20trainer%20for%20Image%20Analysts).'' 2019-05-30 08:30:00 UTC 2019-05-31 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Members of the Group.Image data analysts who are already involved in delivering training or planning to do so in the near future workshops_and_courses [] HDRUK
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