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  • Biological Imaging Data Management for Life Scientists

    14 July 2016

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists-eb567418-c2a4-45dc-8363-1778a4bc4b13 [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of analysis tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Management for Facility Managers. More information on this event are available [here](http://www.training.cam.ac.uk/bioinformatics/event/1769270). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Biological%20imaging%20data%20management%20for%20life%20scientists_bioinfo-omerols_14.07.2016_1769278&CourseName=Biological%20imaging%20data%20management%20for%20life%20scientists&CourseDate=14.07.2016&CourseDuration=1&EventID=1769278).'' 2016-07-14 08:30:00 UTC 2016-07-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Cancer Genomics

    20 - 23 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Cancer Genomics https://tess.elixir-europe.org/events/cancer-genomics-2017 This course will focus on the analysis of data from genomic studies of Cancer. 2017-06-20 08:30:00 UTC 2017-06-23 17:45:00 UTC Gabriella Rustici European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge Cambridgeshire United Kingdom CB10 1SD [] Johanna Langrish [] PhD studentsPostdoctoral Researchers 30 workshops_and_courses registration_of_interest HDRUK
  • In Silico Systems Biology

    9 - 14 July 2017

    Cambridge, United Kingdom

    Elixir node event
    In Silico Systems Biology https://tess.elixir-europe.org/events/in-silico-systems-biology-e96b3852-5b7b-4e70-a1d7-2c3352ce59a4 Run jointly with the Wellcome Trust, this course will provide participants with an introduction to network analysis and an in-depth training in the main modelling approaches used in systems biology. 2017-07-09 12:00:00 UTC 2017-07-14 16:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] PhD studentsResearchers 30 workshops_and_courses registration_of_interest HDRUK
  • Biological Imaging Data Management for Life Scientists

    7 December 2017

    Cambridge, United Kingdom

    Elixir node event
    Biological Imaging Data Management for Life Scientists https://tess.elixir-europe.org/events/biological-imaging-data-management-for-life-scientists [The Open Microscopy Environment](https://www.openmicroscopy.org/) (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. OME has three components: * OME-TIFF, standardised file format and data model; * Bio-Formats, a software library for reading proprietary image file formats; and * OMERO, a software platform for image data management and analysis. In this one day course, we will present the OMERO platform, and show how to import, organise, view, search, annotate and publish imaging data. Additionally, we will briefly introduce how to use a variety of processing tools with OMERO. This course is organized alongside a one day course on Biological Imaging Data Processing for Data Scientists. More information on this event are available [here](https://training.csx.cam.ac.uk/bioinformatics/event/2280783). This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2239247&course-title=Biological%20imaging%20data%20management%20for%20life%20scientists).'' 2017-12-07 09:30:00 UTC 2017-12-07 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data management Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Anyone wanting to use OMERO to organizeviewannotate and publish imaging dataFacility Managers wanting to train usersGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using public data resources to build a business model

    18 July 2018

    Cambridge, United Kingdom

    Using public data resources to build a business model https://tess.elixir-europe.org/events/using-public-data-resources-to-build-a-business-model Entrepeneurial Postdocs of Cambridge (EPOC) is organising an event entitled Using public data resources to build a business model together with ELIXIR UK, Repositive and One Nucleus to explore how public life sciences data infrastructures generate innovation and support the creation of start-ups and SMEs. 2018-07-18 18:00:00 UTC 2018-07-18 21:00:00 UTC Entrepeneurial Postdocs of Cambridge and ELIXIR-UK Postdoc Centre, 16, Mill Lane, Cambridge, United Kingdom Postdoc Centre, 16, Mill Lane Cambridge Cambridgeshire United Kingdom CB2 1SB Data integration and warehousing Bioinformatics University of Cambridge epoc@admin.cam.ac.uk ELIXIROne NucleusRepositive Researcherspost-docsPhD students meetings_and_conferencesworkshops_and_courses [] bioinformaticsentrepeneurshipdatalife sciences
  • Single-Cell RNAseq

    3 - 7 December 2018

    Norwich, United Kingdom

    Single-Cell RNAseq https://tess.elixir-europe.org/events/single-cell-rnaseq-workshop The course provides an introduction to Single Cell Genomics. It covers several aspects such as the experimental design, cell sorting and processing for production of quality samples for sequencing, generation of sequencing data, assessing the quality of sequence data, data visualisation, differential expression analyses and identifying Copy Number Variants at the single cell level. 2018-12-03 09:00:00 UTC 2018-12-07 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Cell biology RNA-Seq [] training@earlham.ac.uk [] PhD studentspost-docsWet-lab Researchers workshops_and_courses [] []
  • Train the Trainer for Image Analysts

    30 - 31 May 2019

    Cambridge, United Kingdom

    Elixir node event
    Train the Trainer for Image Analysts https://tess.elixir-europe.org/events/train-the-trainer-ace57510-4abc-42c3-942a-fe1b145ea9ad This course aims to provide trainers with guidance and tips for developing and delivering training in image analysis, exploring a range of methods appropriate to different learning styles and examining the requirements for a successful course (both scientific and logistic). The first part of the course will give participants principles of training theory and best practises for developing and delivering their future training content; the second part will be a hackathon to kick start the development of a common set of training materials in image analysis. This event is organized in collaboration with the [Image Analysis Focused Interest Group](http://iafig-rms.org/) and is supported by the [Royal Microscopical Society](https://www.rms.org.uk/). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2956475&course-title=Train%20the%20trainer%20for%20Image%20Analysts).'' 2019-05-30 08:30:00 UTC 2019-05-31 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Members of the Group.Image data analysts who are already involved in delivering training or planning to do so in the near future workshops_and_courses [] HDRUK
  • Software Carpentry

    21 - 22 January 2020

    Norwich, United Kingdom

    Software Carpentry https://tess.elixir-europe.org/events/software-carpentry-e28d91b4-59e7-47d7-a7f0-54b3d09e0172 Our goal is to help scientists become more productive by teaching them basic computing skills like program design, version control, testing and task automation. In this two-day bootcamp, short tutorials will alternate with hands-on practical exercises. Participants will be encouraged both to help one another, and to apply what they have learned to their own research problems during and between sessions. 2020-01-21 09:00:00 UTC 2020-01-22 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk [] PhD studentspost-docspostgrad workshops_and_courses first_come_first_served SoftwareCarpentrypythonUnix Shell
  • Data Carpentry

    3 - 4 March 2020

    Norwich, United Kingdom

    Data Carpentry https://tess.elixir-europe.org/events/data-carpentry-6bde217e-337f-4bea-96f7-e419c62f5fe9 Data Carpentry workshops are for any researcher who has data they want to analyse, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. 2020-03-03 09:00:00 UTC 2020-03-04 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk [] post-docsPhD studentspostgrad workshops_and_courses first_come_first_served Data carpentryCommand lineData analysis
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