Register event
  • Software Carpentry - Introduction to Programming in R

    8 August 2017

    Melbourne, Australia

    Software Carpentry - Introduction to Programming in R https://tess.elixir-europe.org/events/software-carpentry-introduction-to-programming-in-r 2017-08-08 09:30:00 UTC 2017-08-08 16:30:00 UTC Intersect Australia HS3 401, La Trobe University - Bundoora , Melbourne, Australia HS3 401, La Trobe University - Bundoora Melbourne Australia Bioinformatics La Trobe University [] [] workshops_and_courses [] R-programming
  • Using Databases and SQL

    25 August 2017

    Melbourne, Australia

    Using Databases and SQL https://tess.elixir-europe.org/events/using-databases-and-sql-1bf7416d-eff0-4f81-b51a-f613e41209eb 2017-08-25 09:30:00 UTC 2017-08-25 13:00:00 UTC Intersect Australia HS3 402, La Trobe University, Melbourne Campus, Plenty Road, Melbourne, Australia HS3 402, La Trobe University, Melbourne Campus, Plenty Road Melbourne Australia Bioinformatics La Trobe University [] [] workshops_and_courses [] Biological databases
  • Excel Fu for Researchers

    5 September 2017

    Melbourne, Australia

    Excel Fu for Researchers https://tess.elixir-europe.org/events/excel-fu-for-researchers 2017-09-05 09:30:00 UTC 2017-09-05 16:30:00 UTC Intersect Australia HS3 402, La Trobe University, Bundoora, Melbourne, Australia HS3 402, La Trobe University, Bundoora Melbourne Australia Data management La Trobe University [] [] workshops_and_courses [] bionformatics
  • Advanced Scientific Programming in Python

    14 - 21 January 2018

    Melbourne, Australia

    Advanced Scientific Programming in Python https://tess.elixir-europe.org/events/advanced-scientific-programming-in-python Applications are now open for this international school being held in the Southern Hemisphere for the first time. The Advanced Scientific Programming in Python (ASPP) summer school has had 10 extremely successful iterations in Europe (https://python.g-node.org/archives). Now, thanks to funding from the International Neuroinformatics Coordinating Facility (INCF), Melbourne is hosting the first ASPP workshop focussed on the Asia Pacific region. 2018-01-14 17:51:00 UTC 2018-01-21 17:51:00 UTC Juan Nunez-Iglesias, Melbourne Bioinformatics University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Imaging Neurobiology Informatics University of Melbourne aspp@melbournebioinformatics.org.au INCF Life Science Researcherspost-docsPhD studentsMaster studentsbioinformaticians workshops_and_courses [] Pythonneurosciencesbioinformatics
  • Tools for reproducible research - ISMB/ECCB 2019

    21 July 2019

    Basel, Switzerland

    Tools for reproducible research - ISMB/ECCB 2019 https://tess.elixir-europe.org/events/tools-for-reproducible-research-0ed30b48-9c67-48f5-8616-6ca21c78c509 Educators: Bjoern Grüning (RBC), Johannes Köster, Devon Ryan Date: 21.07.2019 Location: ISMB/ECCB Basel Content: The typical data analyst must simultaneously juggle multiple projects, each having its own duration and software requirements. As few analysts have any formal training on structuring or even writing the code necessary to perform an analysis, it is unsurprising that the iterative analytic process can produce a wide assortment of almost identically named files (e.g., “final_results.txt”, “final_results.version2.txt”, “final_results.really_final.txt”), all with unclear origins and produced with a hodge-podge of similarly poorly named scripts. The near impossibility of tracing a results file to the exact process that produced it creates untold difficulties both when it comes time to publish results as well as when planning subsequent experiments months or years later (afterall, which of the “final_results” files was really the “right one”?). These issues are further compounded by software paths and other similar assumptions being hard-coded into scripts, preventing easy analysis replication elsewhere. Performing analyses in a reproducible and traceable manner is clearly needed to combat such problems. Schedule Overview 2:00 - 2:10 pm Installing conda and snakeMake 2:10 - 2:30 pm Intro to conda and bioconda (slides) 2:30 - 3:30 pm Hands-on Session: creating conda envs and installing packages from bioconda repo This practical would require installing hisat, samtools and deeptools via bioconda 3:30 - 4:00 pm Hands-on Session: writing conda recipes Topics in BioVis (including examples) Visualization of sequences, macromolecules, omics data, biological networks 4:00 - 4:15 am Coffee Break 4:15 - 4:35 pm Intro to snakemake Specific tools for visualizing large-scale biological data 4:35 - 6:00 Hands On Session: Writing a snakemake workflow wrapper for mapping, indexing and creating coverage files Learning goals: In this hands-on tutorial, we demonstrate how Conda can be used to deploy specific software versions easily, reproducibly, and without administrator credentials. Moreover, we demonstrate how Conda’s ability to create isolated software environments helps to avoid side-effects between different analyses or different steps of the same analysis. Attendees will also learn how to create conda recipes themselves, so they can contribute new packages to projects such as Bioconda. We further demonstrate how Snakemake can be used in combination with Conda and Containers to create reproducible analysis workflows and execute them on any platform from workstations to clusters and the cloud. Finally, using snakePipes as an example, we demonstrate how Conda and Snakemake can be used to define reproducible and flexible workflows for complex genomics analysis. Prerequisites: - Laptops with Linux or MacOS - Pre-installed Miniconda - install via miniconda : https://conda.io/miniconda.html - Expected audience should have basic familiarity with python, git and the command line. Keywords: Conda, Bioconda, snakemake, Bioconductor, reproducible research Tools: Conda, Bioconda, snakemake, 2019-07-21 09:00:00 UTC 2019-07-21 17:00:00 UTC de.NBI Basel, Basel, Switzerland Basel Basel Basel-Stadt Switzerland [] [] [] meetings_and_conferences [] []

Note, this map only displays events that have geolocation information in TeSS.
For the complete list of events in TeSS, click the grid tab.