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85 events found

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  • IBMS Biomedical Science Congress

    26 - 28 September 2011

    Birmingham, United Kingdom

    IBMS Biomedical Science Congress https://tess.elixir-europe.org/events/ibms-biomedical-science-congress 2011-09-26 00:00:00 UTC 2011-09-28 00:00:00 UTC The Institute of Biomedical Science Birmingham, United Kingdom Birmingham United Kingdom Proteomics Genomics Preclinical and clinical studies [] [] [] meetings_and_conferences [] BiotherapeuticsMedicine
  • 2013 Galaxy Community Conference

    1 - 3 July 2013

    Oslo, Norway

    2013 Galaxy Community Conference https://tess.elixir-europe.org/events/2013-galaxy-community-conference 2013-07-01 00:00:00 UTC 2013-07-03 00:00:00 UTC University of Oslo University of Oslo, Oslo, Norway University of Oslo Oslo Norway Bioinformatics [] [] [] meetings_and_conferences [] GCC2013galaxyngshigh-throughput-biology
  • IUPS 2013

    21 - 26 July 2013

    Birmingham, United Kingdom

    IUPS 2013 https://tess.elixir-europe.org/events/iups-2013 2013-07-21 00:00:00 UTC 2013-07-26 00:00:00 UTC The Physiological Society Birmingham and The International Convention Centre, Birmingham, United Kingdom Birmingham and The International Convention Centre Birmingham United Kingdom Physiology [] [] [] meetings_and_conferences [] []
  • IUPS 2013

    21 - 26 July 2013

    Birmingham, United Kingdom

    IUPS 2013 https://tess.elixir-europe.org/events/iups-2013-672f5894-8399-4384-b54f-e0a2cdba1e37 2013-07-21 00:00:00 UTC 2013-07-26 00:00:00 UTC The Physiological Society International Convention Centre, Birmingham, United Kingdom International Convention Centre Birmingham United Kingdom Physiology [] [] [] meetings_and_conferences [] []
  • Bioinformatics 2014

    11 - 13 June 2014

    Oslo, Norway

    Bioinformatics 2014 https://tess.elixir-europe.org/events/bioinformatics-2014 2014-06-11 01:00:00 UTC 2014-06-13 01:00:00 UTC Society for Bioinformatics in Northern Europe / Elixir Norway Oslo, Norway Oslo Norway Bioinformatics [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • Soft Ionisation Mass Spectrometric Techniques and the Environmental Sciences

    10 December 2014

    Birmingham, United Kingdom

    Soft Ionisation Mass Spectrometric Techniques and the Environmental Sciences https://tess.elixir-europe.org/events/soft-ionisation-mass-spectrometric-techniques-and-the-environmental-sciences 2014-12-10 00:00:00 UTC 2014-12-10 00:00:00 UTC University of Birmingham Birmingham, United Kingdom Birmingham United Kingdom Systems biology [] [] [] meetings_and_conferences [] []
  • The EMBO Meeting 2015

    5 - 8 September 2015

    Birmingham, United Kingdom

    The EMBO Meeting 2015 https://tess.elixir-europe.org/events/the-embo-meeting-2015 2015-09-05 01:00:00 UTC 2015-09-08 01:00:00 UTC Birmingham, United Kingdom Birmingham United Kingdom Systems biology [] [] [] meetings_and_conferences [] []
  • EMBO Meeting 2015

    5 - 8 September 2015

    Birmingham, United Kingdom

    Elixir node event
    EMBO Meeting 2015 https://tess.elixir-europe.org/events/embo-meeting-2015 EMBL-EBI are attending the EMBO Meeting in 2015! Although we will not be exhibiting this year, please do visit the EMBL booth and our speakers will drop by. 2015-09-05 09:00:00 UTC 2015-09-08 00:00:00 UTC Birmingham International Convention Centre, Birmingham, United Kingdom Birmingham International Convention Centre Birmingham United Kingdom B1 2EA [] Katrina Costa [] [] [] [] []
  • BMSS Annual Meeting & BMSS Introduction to Mass Spectrometry Course 2015

    14 - 15 September 2015

    Birmingham, United Kingdom

    BMSS Annual Meeting & BMSS Introduction to Mass Spectrometry Course 2015 https://tess.elixir-europe.org/events/bmss-annual-meeting-bmss-introduction-to-mass-spectrometry-course-2015 2015-09-14 01:00:00 UTC 2015-09-15 01:00:00 UTC Birmingham, United Kingdom Birmingham United Kingdom Metabolomics [] [] [] meetings_and_conferences [] []
  • European Academy of Paediatrics, congress and Mastercourse 2015

    17 - 20 September 2015

    Oslo, Norway

    European Academy of Paediatrics, congress and Mastercourse 2015 https://tess.elixir-europe.org/events/european-academy-of-paediatrics-congress-and-mastercourse-2015 2015-09-17 01:00:00 UTC 2015-09-20 01:00:00 UTC Oslo, Norway Oslo Norway Medicine [] [] [] meetings_and_conferences [] []
  • NGS data analysis course, Pontificia Universidad Javeriana, Bogota, November 2015

    23 - 24 November 2015

    Bogota, Colombia

    Elixir node event
    NGS data analysis course, Pontificia Universidad Javeriana, Bogota, November 2015 https://tess.elixir-europe.org/events/ngs-data-analysis-course-pontificia-universidad-javeriana-bogota-november-2015 This course is organised for professionals in life sciences and biomedical sciences, preferably researchers or graduate students who are conducting or planning to conduct investigations that require the bioinformatic analysis of data from omics technologies of high throughput sequencing or next generation (NGS). 2015-11-23 16:15:00 UTC 2015-11-24 16:15:00 UTC Pontificia Universidad Javeriana, Bogota, Colombia Pontificia Universidad Javeriana Bogota Colombia [] Maria Bacadare Goitia [] [] [] [] []
  • Quality Assurance and Quality Control in Metabolomics

    12 - 13 December 2016

    Birmingham, United Kingdom

    Quality Assurance and Quality Control in Metabolomics https://tess.elixir-europe.org/events/quality-assurance-and-quality-control-in-metabolomics This 2-day course will provide a comprehensive theoretical overview and hands-on experience of the application of quality assurance (QA) and quality control (QC) in metabolomics. It will include both theoretical and practical components to provide hands-on experience of using the mass spectrometer (a maximum of 4 people working on the instrument in a session) and the analysis of data. Experts who have developed the application of QA and QC procedures within the field will lead the course. 2016-12-12 00:00:00 UTC 2016-12-13 00:00:00 UTC Birmingham, United Kingdom Birmingham United Kingdom Metabolomics [] [] [] workshops_and_courses [] []
  • MPI

    12 January - 12 April 2017

    Heverlee, Belgium

    Elixir node event
    MPI https://tess.elixir-europe.org/events/mpi The Message Passing Interface is the de facto standard for distributed programming in a scientific context. It is implemented in libraries that can be used from C/C++/Fortran, although wrappers for other languages exist as well. To write efficient code, a thorough understanding of the semantics of the API is required, this course will emphasize potential performance hazards and pitfalls. The strengths and weaknesses of various MPI features are discussed. In several hands-on sessions, the participant has the opportunity to experiment. Parallel architectures and programming models MPI overview MPI programming model Messages and point-to-point communication Non-blocking communication Derived data types Virtual topologies Collective communication MPI-2 overview MPI-2 one-sided communication Parallel debugging MPI-2 parallel file MPI-3 overview This MPI-course covers the full MPI-3 standard. Acknowledgement This course is based on a PATC course developed by dr. Rolf Rabenseifner (HLRS, Stuttgart) Detailed time/place info 01/12/2017 - 09.00 - 12.30 01/12/2017 - 13.30 - 17.0004/12/2017 - 09.00 - 12.30 04/12/2017 - 13.30 - 17.00 2017-01-12 09:00:00 UTC 2017-04-12 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    24 February 2017

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 24.02.2017, 09:00-17:00 2017-02-24 09:00:00 UTC 2017-02-24 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux scripting

    28 February 2017

    Heverlee, Belgium

    Elixir node event
    Linux scripting https://tess.elixir-europe.org/events/linux-scripting This course will give an introduction to Linux scripting and a short summary of possible Linux tools used in scripts: Linux scripting (Bash shell) Basic loops in Linux Useful commands: grep, cut Linux tools: awk, sed Using Linux scripting in writing PBS scripts for HPC This course provides several hands-on sessions Detailed time/place info 28.02.2017, 9:00-13:00 2017-02-28 09:00:00 UTC 2017-02-28 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • C introduction

    13 - 21 March 2017

    Heverlee, Belgium

    Elixir node event
    C introduction https://tess.elixir-europe.org/events/c-introduction This course will provide the basics on the programming environment. Participants will be able to write small applications themselves as well as understand C programming code. Small examples and hands-on will be used to experiment with the different topics. C History Writing a small C progam, understand the development cycle Preprocessor Assignments, Keywords, Identifiers, Variables Operators Control flow Functions Arrays and structures Pointers Working with files and standard I/O Detailed time/place info 13.03.2017, 09:00-12:00 14.03.2017, 09:00-12:00 20.03.2017, 09:00-12:00 21.03.2017, 09:00-12:00 2017-03-13 09:00:00 UTC 2017-03-21 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • High Performance Python

    20 March 2017

    Heverlee, Belgium

    Elixir node event
    High Performance Python https://tess.elixir-europe.org/events/high-performance-python Python is making inroads into the HPC landscape. However, writing Python code for efficient scientific computing is not entirely trivial. In this course a variety of techniques and libraries will be discussed that are useful in this context. Subjects covered include profiling of code to discover opportunities for optimization, using Cython, a Python extension that translate critical code sections into efficient C, wrapping C/C++/Fortran libraries in Python, multithreaded/multiprocess Python, distributed programming use mpi4py, and pySpark for data science. Detailed time/place info 20.03.2017, 13:00-17:00 2017-03-20 09:00:00 UTC 2017-03-20 00:00:00 UTC ICTS Opleidingscentrum room B, Heverlee, Belgium ICTS Opleidingscentrum room B Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC Tips & Tricks: Code modernisation & optimization - Real world case studies and Intel and Allinea tools for finding performance bottleneck

    24 March 2017

    Heverlee, Belgium

    Elixir node event
    HPC Tips & Tricks: Code modernisation & optimization - Real world case studies and Intel and Allinea tools for finding performance bottleneck https://tess.elixir-europe.org/events/hpc-tips-tricks-code-modernisation-optimization-real-world-case-studies-and-intel-and-allinea-tools-for-finding-performance-bottleneck Code modernisation is about (re)writing code with the purpose of making optimal use of today’s (and tomorrow’s) computers. While a suboptimal computational performance of a code running on your desktop may be acceptable because it affects only you, codes running on HPC systems costing 1 M€ or more which use only a fraction of the machine capacity cannot be allowed. This Tips and Tricks session starts out with a short review of important aspects of computer architecture affecting performance and continues to show how to determine the performance of a code, by means of simple back-of-the envelope-calculations, as well as using sophisticated tools from the Intel Cluster Studio, such as Intel Advisor, Intel VTune and Allinea MAP. We demonstrate how to these tools can discover hot spots and their causes. We will examine some frequent causes of bad performance by studying two common scientific problems, the simulation of atomistic systems in a Monte Carlo setting, and in a Molecular Dynamics setting. Surprisingly, the most frequent cause of bad performance turns out to be the way how data are accessed, rather than algorithmic complexity or how many instructions your need to solve the problem. We will demonstrate how space filling curves like the Hilbert curve provide an efficient solution for fixing bad data access patterns in the simulation of atomistic systems (among other applications). This talk also touches upon arguments for choosing between (or combining) different programming languages (Fortran, C/C++, Python) for high performance computing. Detailed time/place info 24.03.2017, 09:00-13:00 2017-03-24 09:00:00 UTC 2017-03-24 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • High performance Python

    18 April 2017

    Heverlee, Belgium

    Elixir node event
    High performance Python https://tess.elixir-europe.org/events/high-performance-python-df7e2fac-31d0-4515-a0e2-39a0f1606da1 Python is making inroads into the HPC landscape. However, writing Python code for efficient scientific computing is not entirely trivial. In this course a variety of techniques and libraries will be discussed that are useful in this context. Subjects covered include profiling of code to discover opportunities for optimization, using Cython, a Python extension that translate critical code sections into efficient C, wrapping C/C++/Fortran libraries in Python, multithreaded/multiprocess Python, distributed programming use mpi4py, and pySpark for data science. Detailed time/place info 18.04.2017, 13:30-17:30 2017-04-18 09:00:00 UTC 2017-04-18 00:00:00 UTC ICTS Opleidingscentrum room B, Heverlee, Belgium ICTS Opleidingscentrum room B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux introduction

    10 May 2017

    Heverlee, Belgium

    Elixir node event
    Linux introduction https://tess.elixir-europe.org/events/linux-introduction-4b7353c5-ec73-43b0-bd05-d9e2729e45e6 This course will give a short practical summary of the basic things one needs when using mainly the command line in Linux: Overview and distributions How to start working with Linux Short introduction to Graphical User Interface Command line basics: getting help, useful commands Linux File System: navigating, file paths, file manipulation, disk space, archiving Text editing- Groups, users, security: access rights Process control This course provides several hands-on sessions Detailed time/place info 05/10/2017 - 09.00 - 13.00 2017-05-10 09:00:00 UTC 2017-05-10 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Make - introduction

    12 May 2017

    Heverlee, Belgium

    Elixir node event
    Make - introduction https://tess.elixir-europe.org/events/make-introduction This course will give an introduction to creating/modifying Makefiles: Makefile introduction Basics of make operation Comments and line continuations Creating rules: dependencies and actions Using Macros Parameters and Conditional statements Useful compiler options Other possibilities of automation This course provides hands-on sessions Detailed time/place info 05/12/2017 - 09.00 - 13.00 2017-05-12 09:00:00 UTC 2017-05-12 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Linux tools

    11 July 2017

    Heverlee, Belgium

    Elixir node event
    Linux tools https://tess.elixir-europe.org/events/linux-tools This course will give an introduction to several useful Linux tools useful in academic research and everyday use of the system. Brief introduction to script files in Bash shell Using quotes Command line parameters i/o and pipes Useful commands: grep, cut, uniq, tr, sort, join Linux tools: awk, sed Using Linux scripting in writing PBS scripts for HPC This course provides hands-on sessions Detailed time/place info 07/11/2017 - 09.00 - 13.00 2017-07-11 09:00:00 UTC 2017-07-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • GPU programming opportunities and challenges: a case study in finite element analysis

    5 August 2017

    Heverlee, Belgium

    Elixir node event
    GPU programming opportunities and challenges: a case study in finite element analysis https://tess.elixir-europe.org/events/gpu-programming-opportunities-and-challenges-a-case-study-in-finite-element-analysis GPUs have become an increasingly popular general computing platform. However, their efficient utilization requires some understanding of the architecture and programming model. A sensible question arises about their applicability in terms of the necessary time investment versus the added scientific value. An introduction on the basics of GPGPUs is presented first, including the architecture, the computing model and a general methodology for parallelizing an algorithm. Opportunities and pitfalls are then elucidated with basic examples of problems/implementations suited or unsuited for GPUs. Assessing a problem for its applicability to GPUs is shown as a key decision-making step. The seminar is not only envisioned as an introduction to GPU programming; key concepts are elucidated specifically on a concrete case of Finite Element (FE) algorithm parallelization. Concepts such as problem-breakdown, testing, verification, profiling and optimization are presented through the FE algorithm's implementation. Overall, a realistic assessment of adopting GPU computation (and everything it can entail) is provided through the lens of added scientific value. Detailed time/place info 08.05.2017, 10:00-12:00 2017-08-05 09:00:00 UTC 2017-08-05 00:00:00 UTC ICTS Opleidingscentrum room D, Heverlee, Belgium ICTS Opleidingscentrum room D Heverlee Belgium 3001 [] [] [] [] [] []
  • Version control

    11 August 2017

    Heverlee, Belgium

    Elixir node event
    Version control https://tess.elixir-europe.org/events/version-control-50be7a74-80bc-423b-b664-2050bc468e44 Did you ever wish you could have gone back to a previous version of the document you are editing?Did a co-worker accidentally overwrite your modifications to a file?Did you ever wonder when and why a change was made to a program? If at least one of the above applies, version control software is able to assist you in your work. In this information session we will provide an overview of how version control software can be used effectively by an individual, as well as by a group of collaborators.Version control software is not simply for programmers, it can help anyone who works on documents that change over time.Publications, course notes, bibliographies, even data come to mind. Although the emphasis is on the git version control system, subversion will be discussed as well. Detailed time/place info 08/11/2017 - 09.00 - 12.00 2017-08-11 09:00:00 UTC 2017-08-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Version control

    11 September 2017

    Heverlee, Belgium

    Elixir node event
    Version control https://tess.elixir-europe.org/events/version-control Did you ever wish you could have gone back to a previous version of the document you are editing?Did a co-worker accidentally overwrite your modifications to a file?Did you ever wonder when and why a change was made to a program? If at least one of the above applies, version control software is able to assist you in your work. In this information session we will provide an overview of how version control software can be used effectively by an individual, as well as by a group of collaborators.Version control software is not simply for programmers, it can help anyone who works on documents that change over time.Publications, course notes, bibliographies, even data come to mind. Although the emphasis is on the git version control system, subversion will be discussed as well. Detailed time/place info 09/11/2017 - 09.00 - 12.00 2017-09-11 09:00:00 UTC 2017-09-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Python for Data Processing

    5 - 6 October 2017

    Heverlee, Belgium

    Elixir node event
    Python for Data Processing https://tess.elixir-europe.org/events/python-for-data-processing 2017-10-05 09:30:00 UTC 2017-10-06 17:00:00 UTC VIB Bioinformatics Core ICTS Education Center KUL Leslokaal A, Heverlee, Belgium ICTS Education Center KUL Leslokaal A Heverlee Belgium 3001 [] [] [] [] [] []
  • HPC@KULeuven introduction

    10 October 2017

    Heverlee, Belgium

    Elixir node event
    HPC@KULeuven introduction https://tess.elixir-europe.org/events/hpc-kuleuven-introduction-45c3de3d-2d15-404d-8c46-f36054b431a1 An introduction to the HPC infrastructure: What is a cluster? What HPC infrastructure is available at KU Leuven? Software environment. Accounts registrations and conditions of use. How to submit jobs. Hands-on. Detailed time/place info 10/10/2017 - 09.00 - 13.00 2017-10-10 09:00:00 UTC 2017-10-10 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Matlab - Programming - introduction

    11 October 2017

    Heverlee, Belgium

    Elixir node event
    Matlab - Programming - introduction https://tess.elixir-europe.org/events/matlab-programming-introduction This 1 day course is building further on the introductory course (Matlab supercalculator) and covers more topics that are more oriented towards using Matlab as a programming environment: Basic Programming constructions in Matlab Debugging M-files: scripts and functions More on plotting in Matlab Improving Code Performance Create a GUI using MATLAB Guide After completion the student should be able to: Use the MATLAB environment in an efficient way Write programs in MATLAB to solve scientific problems Scripts, functions Use the available tools to improve the performance Visualize data in Matlab Detailed time/place info 10/11/2017 - 09.00 - 12.30 10/11/2017 - 13.30 - 17.00 2017-10-11 09:00:00 UTC 2017-10-11 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
  • Quality Assurance and Quality Control in Metabolomics

    12 - 13 October 2017

    Birmingham, United Kingdom

    Elixir node event
    Quality Assurance and Quality Control in Metabolomics https://tess.elixir-europe.org/events/quality-assurance-and-quality-control-in-metabolomics-ea29a17f-d41e-4488-808b-b137b7c82b93 This 2-day course will provide a comprehensive theoretical overview and hands-on experience of the application of quality assurance (QA) and quality control (QC) in metabolomics. It will include both theoretical and practical components to provide hands-on experience of using the mass spectrometer (a maximum of 4 people working on the instrument in a session) and the analysis of data. Experts who have developed the application of QA and QC procedures within the field will lead the course. 2017-10-12 09:00:00 UTC 2017-10-13 00:00:00 UTC Birmingham Metabolomics Training Centre, Birmingham, United Kingdom Birmingham Metabolomics Training Centre Birmingham United Kingdom B15 2TT [] [] [] [] [] []
  • Matlab - Supercalculator - introduction

    13 October 2017

    Heverlee, Belgium

    Elixir node event
    Matlab - Supercalculator - introduction https://tess.elixir-europe.org/events/matlab-supercalculator-introduction This 1 day course provides a quick introduction to MATLAB. The purpose is to give students fluency in MATLAB: get to know the software environment, use it as a super scientific calculator and know the very basics of Matlab as a programming environment. Topics covered are: MATLAB as a calculator MATLAB Desktop and the MATLAB HELP Creating Arrays Array Operations Logical Operations Matlab Programming Environment MATLAB Editor M-files Basic Graphics: Plotting 2D/3D After completion the student should be able to: Use the MATLAB environment in an efficicient way Able to use Matlab for interactive computations use MATLAB functions/toolboxes Know where to find help in the MATLAB environment Understand the main features of the MATLAB development environment Write small scripts in MATLAB containing sequential statements. Detailed time/place info 13/10/2017 - 09.00 - 12.30 13/10/2017 - 13.30 - 17.00 2017-10-13 09:00:00 UTC 2017-10-13 00:00:00 UTC ICTS opleidingscentrum B, Heverlee, Belgium ICTS opleidingscentrum B Heverlee Belgium 3001 [] [] [] [] [] []
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