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  • Hypothesis testing using R

    12 March 2020

    St Lucia, Australia

    Hypothesis testing using R https://tess.elixir-europe.org/events/hypothesis-testing-using-r-93b677b7-8c85-4a13-af57-ef00030b944d 2020-03-12 09:00:00 UTC 2020-03-12 17:00:00 UTC QCIF The University of Queensland, St Lucia, Australia The University of Queensland St Lucia Queensland Australia 4072 University of Queensland Mark Crowe - mark.crowe@qcif.edu.au [] Postgraduate studentsPostdoctoral researchers workshops_and_courses [] R-programmingStatisticsInferential statistics
  • Introduction to Regular Expressions

    18 March 2020

    Heidelberg, Germany

    Introduction to Regular Expressions https://tess.elixir-europe.org/events/introduction-to-regular-expressions Educators: Supriya Khedkar, Toby Hodges (HD-HuB) Date: 18/03/2020 09:30 - 16:00 Location: EMBL Heidelberg; Room 202 Contents: Do you often work with lots of data files on the computer, are you often trying to spot particular files or lines of text in them that are important for you? If so, then using regular expressions could save you a lot of time and frustration! Regular expressions (regex/REs) are a language designed to describe patterns of characters that you want to match in a body of text. For example, if you want to extract every Ensembl Gene ID in a GFF file, find tandem repeats in a large set of sequences, or extract every email address in a large document, regular expressions are the perfect tool. Regular expressions are incorporated into a wide range of software and programming languages, and the workshop will include examples of their use on the UNIX command line and in R and Python. Learning goals: This workshop will provide an introduction to REs and cover some of the simple but powerful ways that these can be used to find patterns in large volumes of text data. The workshop will be interactive and driven by examples to demonstrate how you might use regular expressions in your work. Prerequisites: Participants are required to bring their own laptop to the workshop, with a text editor suitable for programming (e.g. Atom, Sublime Text, VSCode, Notepad++) installed. Keywords: UNIX command line, R, Python Tools: UNIX command line, R, Python 2020-03-18 09:00:00 UTC 2020-03-18 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • Data Management Planning workshop for Life Science Projects

    27 March 2020

    Oslo, Norway

    Data Management Planning workshop for Life Science Projects https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-9baab407-a36b-49bf-aa27-76cf0046cc79 We are pleased to announce the Data Management planning workshop for Life Scientists organised in Oslo by [ELIXIR Norway](https://www.elixir-norway.org/), [Digital Life Norway](https://digitallifenorway.org/) and [UiO Research Data team](https://www.uio.no/english/for-employees/support/research/research-data-management/). The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) who are planning to submit a grant application for a research project. Max. number of participants is 30. In this course we will cover how to generate a data management plan for a Life Science research project, which will meet the requirements of the funding organisations. ## Course content: ##### 0900 - 0915 Introduction ##### 0915 - 0945 Requirements from institutions & funding bodies * UiO * H2020/ERC * Research Council Norway ##### 0945 - 1015 About legal requirements * Health Research Act * Personal Data Act ##### 1015 - 1030 Short break ##### 1030 - 1115 Licensing of data, biological material and software ##### 1115 - 1200 Information on national and local storage infrastructures * NeLS/StoreBioInfo * NIRD * TSD * UiO Computing & Storage resources ##### 1200 - 1230 Lunch ##### 1230 - 1315 Relevant deposition repositories/ data archives * domain specific archives (ELIXIR/EMBL-EBI, NCBI) * NIRD archive * DataverseNO * NSD * generic repositories ##### 1315 - 1330 Short break ##### 1330 - 1600 Hands on training and assistance to generate a data management plan ## Requirements: Bring your own laptop and your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the [Data Steward Wizard tool](https://elixir-no.ds-wizard.org) using a structured and detailed questionnaire with references to relevant resources. #### [Register](https://skjemaker.app.uib.no/view.php?id=7924299) before 20th of March 2020 2020-03-27 09:00:00 UTC 2020-03-27 16:00:00 UTC ELIXIR-Norway Moltke Moes vei 39, Georg Sverdrups hus, Auditorium 2, https://www.uio.no/om/finn-fram/omrader/blindern/bl27/, Oslo, Norway Moltke Moes vei 39, Georg Sverdrups hus, Auditorium 2, https://www.uio.no/om/finn-fram/omrader/blindern/bl27/ Oslo Norway 0851 Data management University of Oslo Elin Stangeland, Ståle Nygård, Korbinian Bösl Digital Life Norway PhD Students Postdocs and Staff members from the University of CambridgeProfessorsResearchers 30 workshops_and_courses first_come_first_served Data management plandata management
  • 9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis

    26 - 29 May 2020

    České Budějovice, Czechia

    9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis https://tess.elixir-europe.org/events/7th-repeatexplorer-workshop-on-the-application-of-next-generation-sequencing-to-repetitive-dna-analysis The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). Registration if open till 5th May. In case of any questions or comments please contact Jiri Macas. 2020-05-26 09:00:00 UTC 2020-05-29 00:00:00 UTC Institute of Plant Molecular Biology, České Budějovice, Czech Republic Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia [] Jiri Macas ELIXIR: The Czech Republic Node PhD StudentspostdocsResearchers workshops_and_courses first_come_first_served []
  • 9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis

    26 - 29 May 2020

    České Budějovice, Czechia

    9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis https://tess.elixir-europe.org/events/repeatexplorer-workshop The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). In case of any questions or comments please contact Jiri Macas. 2020-05-26 09:00:00 UTC 2020-05-29 00:00:00 UTC Institute of Plant Molecular Biology building at the Academy of Sciences and University campus in České Budějovice Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia [] Jiri Macas [] Life Science Researchersbioinformaticians workshops_and_courses first_come_first_served []
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