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  • Introduction to Python for Biologists

    2 - 6 March 2020

    Liverpool, United Kingdom

    Introduction to Python for Biologists https://tess.elixir-europe.org/events/introduction-to-python-for-biologists-789ef24a-854b-40c2-86b6-398ac0ef9cbd 2020-03-02 09:00:00 UTC 2020-03-06 17:00:00 UTC Matthew Gemmell University of Liverpool, Life Science Building, Crown Street, Liverpool, United Kingdom University of Liverpool, Life Science Building, Crown Street Liverpool Merseyside United Kingdom L69 7ZB University of Liverpool [] BeginnersBiologists 25 [] first_come_first_served Python for Biologists
  • CABANA Workshop: Analysis of Crop Genomics Data

    16 - 20 March 2020

    Bogota, Colombia

    Elixir node event
    CABANA Workshop: Analysis of Crop Genomics Data https://tess.elixir-europe.org/events/cabana-workshop-analysis-of-crop-genomics-data-0d1c7271-613b-4672-bac5-19f641f9be70 This course will introduce crop biologists to methods and approaches for analysing crop genomics data. 2020-03-16 08:30:00 UTC 2020-03-20 12:30:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Marco Cristancho [] [] [] [] HDRUK
  • C3DIS 2020

    16 - 20 March 2020

    Melbourne, Australia

    C3DIS 2020 https://tess.elixir-europe.org/events/c3dis-2020 2020-03-16 09:00:00 UTC 2020-03-20 17:00:00 UTC C3DIS Melbourne Convention and Exhibition Centre (MCEC), 1, Convention Centre Place, Melbourne, Australia Melbourne Convention and Exhibition Centre (MCEC), 1, Convention Centre Place Melbourne Australia Bioinformatics [] [] [] [] [] bioinformaticslife sciences
  • Introduction to Regular Expressions

    18 March 2020

    Heidelberg, Germany

    Introduction to Regular Expressions https://tess.elixir-europe.org/events/introduction-to-regular-expressions Educators: Supriya Khedkar, Toby Hodges (HD-HuB) Date: 18/03/2020 09:30 - 16:00 Location: EMBL Heidelberg; Room 202 Contents: Do you often work with lots of data files on the computer, are you often trying to spot particular files or lines of text in them that are important for you? If so, then using regular expressions could save you a lot of time and frustration! Regular expressions (regex/REs) are a language designed to describe patterns of characters that you want to match in a body of text. For example, if you want to extract every Ensembl Gene ID in a GFF file, find tandem repeats in a large set of sequences, or extract every email address in a large document, regular expressions are the perfect tool. Regular expressions are incorporated into a wide range of software and programming languages, and the workshop will include examples of their use on the UNIX command line and in R and Python. Learning goals: This workshop will provide an introduction to REs and cover some of the simple but powerful ways that these can be used to find patterns in large volumes of text data. The workshop will be interactive and driven by examples to demonstrate how you might use regular expressions in your work. Prerequisites: Participants are required to bring their own laptop to the workshop, with a text editor suitable for programming (e.g. Atom, Sublime Text, VSCode, Notepad++) installed. Keywords: UNIX command line, R, Python Tools: UNIX command line, R, Python 2020-03-18 09:00:00 UTC 2020-03-18 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • Research Data Alliance Plenary Meeting

    18 - 20 March 2020

    Melbourne, Australia

    Research Data Alliance Plenary Meeting https://tess.elixir-europe.org/events/research-data-alliance-plenary-meeting 2020-03-18 09:00:00 UTC 2020-03-20 17:00:00 UTC RDA Melbourne Convention and Exhibition Centre (MCEC), 1, Convention Centre Place, Melbourne, Australia Melbourne Convention and Exhibition Centre (MCEC), 1, Convention Centre Place Melbourne Melbourne City Australia Bioinformatics [] [] [] [] [] life sciencesbioinformatics
  • Data Management Planning workshop for Life Science Projects

    27 March 2020

    Oslo, Norway

    Data Management Planning workshop for Life Science Projects https://tess.elixir-europe.org/events/data-management-planning-workshop-for-life-science-projects-9baab407-a36b-49bf-aa27-76cf0046cc79 We are pleased to announce the Data Management planning workshop for Life Scientists organised in Oslo by [ELIXIR Norway](https://www.elixir-norway.org/), [Digital Life Norway](https://digitallifenorway.org/) and [UiO Research Data team](https://www.uio.no/english/for-employees/support/research/research-data-management/). The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) who are planning to submit a grant application for a research project. Max. number of participants is 30. In this course we will cover how to generate a data management plan for a Life Science research project, which will meet the requirements of the funding organisations. ## Course content: ##### 0900 - 0915 Introduction ##### 0915 - 0945 Requirements from institutions & funding bodies * UiO * H2020/ERC * Research Council Norway ##### 0945 - 1015 About legal requirements * Health Research Act * Personal Data Act ##### 1015 - 1030 Short break ##### 1030 - 1115 Licensing of data, biological material and software ##### 1115 - 1200 Information on national and local storage infrastructures * NeLS/StoreBioInfo * NIRD * TSD * UiO Computing & Storage resources ##### 1200 - 1230 Lunch ##### 1230 - 1315 Relevant deposition repositories/ data archives * domain specific archives (ELIXIR/EMBL-EBI, NCBI) * NIRD archive * DataverseNO * NSD * generic repositories ##### 1315 - 1330 Short break ##### 1330 - 1600 Hands on training and assistance to generate a data management plan ## Requirements: Bring your own laptop and your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the [Data Steward Wizard tool](https://elixir-no.ds-wizard.org) using a structured and detailed questionnaire with references to relevant resources. #### [Register](https://skjemaker.app.uib.no/view.php?id=7924299) before 20th of March 2020 2020-03-27 09:00:00 UTC 2020-03-27 16:00:00 UTC ELIXIR-Norway Moltke Moes vei 39, Georg Sverdrups hus, Auditorium 2, https://www.uio.no/om/finn-fram/omrader/blindern/bl27/, Oslo, Norway Moltke Moes vei 39, Georg Sverdrups hus, Auditorium 2, https://www.uio.no/om/finn-fram/omrader/blindern/bl27/ Oslo Norway 0851 Data management University of Oslo Elin Stangeland, Ståle Nygård, Korbinian Bösl Digital Life Norway PhD Students Postdocs and Staff members from the University of CambridgeProfessorsResearchers 30 workshops_and_courses first_come_first_served Data management plandata management
  • R for data science

    31 March - 3 April 2020

    Liverpool, United Kingdom

    R for data science https://tess.elixir-europe.org/events/r-for-data-science The course covered content for these learning objectives: To write your own custom functions To use for loops, apply functions and if statements To analyse large matrices of data in a semi-automated way To normalise data To quantify and correct batch effect To undertake the most common clustering algorithms including k-means and hierarchical To perform variable selection and present these results in different plots including heatmaps To do 2-way ANOVA To undertake multivariate modelling A brief introduction to machine learning. The course included brief theoretical introductions followed by hands on exercises based on real life research examples. 2020-03-31 09:00:00 UTC 2020-04-03 17:00:00 UTC Computational Biology Facility University of Liverpool, Liverpool, United Kingdom University of Liverpool Liverpool Merseyside United Kingdom L69 3GH Statistics and probability Bioinformatics University of Liverpool Computational Biology Facility (cbf@liverpool.ac.uk) [] [] 20 workshops_and_courses registration_of_interest R ProgrammingStatistical-model Statistics Pre-processingTranscriptomicsMetabolomicsProteomics
  • R for beginners

    1 - 3 April 2020

    Liverpool, United Kingdom

    R for beginners https://tess.elixir-europe.org/events/r-for-beginners R is a programming language and free software environment for statistical computing and graphics supported by the R Foundation for Statistical Computing. This course covers: Day 1: Foundations of R: get familiar with R, R studio, operators, variables, functions, directories and the script editor Day 2: Visualisation in basic R (boxplots, scatterplots, line graphs and histograms) and ggplot2 (same types of plots and also manipulation of data for use within this package as well as simple linear regression) Day 3: Introduction to statistical analyses in R: univariate statistics (choosing the right test, checking data assumptions, calculating and extracting the values to report in publications) and Principal Component Analysis (calculation and visualisation with ggplot2) Extra materials: Introduction to the Tidyverse, Introduction to for loops All materials have been built using relevant life sciences/clinical examples. The course has been designed to introduce R from the very basics. Therefore applicants do not need any prior experience to attend, just the desire to learn R. Real life examples with bioinformatic applications are included. 2020-04-01 09:00:00 UTC 2020-04-03 17:00:00 UTC Computational Biology Facility University of Liverpool, Liverpool, United Kingdom University of Liverpool Liverpool Merseyside United Kingdom L69 3GH Computational biology Statistics and probability University of Liverpool Computational Biology Facility (cbf@liverpool.ac.uk) [] [] workshops_and_courses first_come_first_served R-programmingbiostatistics Statistics R programminglife sciences, bioinformaticsClinical Bioinformatics
  • Metagenomics Workshop

    15 - 17 April 2020

    Liverpool

    Metagenomics Workshop https://tess.elixir-europe.org/events/metagenomics-workshop 2020-04-15 09:00:00 UTC 2020-04-17 16:00:00 UTC Matthew Gemmell Sherrington Building, Ashton Street, University of Liverpool, Liverpool Sherrington Building, Ashton Street, University of Liverpool Liverpool United Kingdom L69 3GE [] [] [] 50 workshops_and_courses [] Metagenomics
  • 13th ELIXIR Board meeting (Hinxton)

    22 - 23 April 2020

    Hinxton, United Kingdom

    13th ELIXIR Board meeting (Hinxton) https://tess.elixir-europe.org/events/thirteenth-elixir-board-meeting-hinxton The thirteenth ELIXIR Board will take place at the Wellcome Genome Campus in Hinxton, UK From 29 - 30 April 2020. This meeting is only open to the ELIXIR Board and Observers. Agenda items and meeting documentation will be made available to Board members in due time.  Any inquiries regarding ELIXIR Board meetings should be sent to info@elixir-europe.org. 2020-04-22 09:00:00 UTC 2020-04-23 00:00:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom CB10 1SD [] [] [] meetings_and_conferences [] []
  • Ensembl Browser Workshop, DKFZ, 5 May 2020

    5 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ, 5 May 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-5-may-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-05 09:00:00 UTC 2020-05-05 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, DKFZ, 6 May 2020

    6 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl REST API Workshop, DKFZ, 6 May 2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-dkfz-6-may-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-05-06 09:00:00 UTC 2020-05-06 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • 9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis

    26 - 29 May 2020

    České Budějovice, Czechia

    9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis https://tess.elixir-europe.org/events/7th-repeatexplorer-workshop-on-the-application-of-next-generation-sequencing-to-repetitive-dna-analysis The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). Registration if open till 5th May. In case of any questions or comments please contact Jiri Macas. 2020-05-26 09:00:00 UTC 2020-05-29 00:00:00 UTC Institute of Plant Molecular Biology, České Budějovice, Czech Republic Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia [] Jiri Macas ELIXIR: The Czech Republic Node PhD StudentspostdocsResearchers workshops_and_courses first_come_first_served []
  • 9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis

    26 - 29 May 2020

    České Budějovice, Czechia

    9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis https://tess.elixir-europe.org/events/repeatexplorer-workshop The workshop will focus on theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. Special emphasis will be given to repeat characterization methods implemented in the RepeatExplorer pipeline, including practical training in using the pipeline. The workshop should also serve as a platform for exchange of ideas and latest results with ample time dedicated to open discussions. Participants are encouraged to make short presentations of their research related to the workshop topic and/or bring their own data for practical training. The workshop is organized by the Laboratory of Molecular Cytogenetics of the Biology Centre AS CR. It will take place at the Academy of Sciences / University campus in Ceske Budejovice, Czech Republic. The meeting programme will include theoretical lectures and research reports combined with hands-on training (no programming skills required). In case of any questions or comments please contact Jiri Macas. 2020-05-26 09:00:00 UTC 2020-05-29 00:00:00 UTC Institute of Plant Molecular Biology building at the Academy of Sciences and University campus in České Budějovice Branišovská 1160/31, 31, Branišovská, České Budějovice, Czechia Branišovská 1160/31, 31, Branišovská České Budějovice České Budějovice Czechia [] Jiri Macas [] Life Science Researchersbioinformaticians workshops_and_courses first_come_first_served []
  • NBIS Course Umeå: Python programming with applications to bioinformatics, Umeå

    19 - 24 October 2020

    Glasburen

    Elixir node event
    NBIS Course Umeå: Python programming with applications to bioinformatics, Umeå https://tess.elixir-europe.org/events/nbis-course-umea-python-programming-with-applications-to-bioinformatics-umea-2dee9df0-cf81-4e7d-b14e-1dd65909a0fa #training TBA edu.intro-python@nbis.se or education@nbis.se Course leaders: Nina Norgren and Malin Klang 2020-10-19 09:00:00 UTC 2020-10-24 00:00:00 UTC Glasburen Glasburen [] jessica.lindvall@scilifelab.se [] [] [] [] #trainingtraining
  • CONVERGE: Impact workshop

    15 December 2020

    Hinxton, United Kingdom

    CONVERGE: Impact workshop https://tess.elixir-europe.org/events/converge-impact-workshop 2020-12-15 09:00:00 UTC 2020-12-15 17:00:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom CB10 1SD [] [] [] workshops_and_courses [] []
  • CONVERGE: Industry workshop

    16 December 2020

    Hinxton, United Kingdom

    CONVERGE: Industry workshop https://tess.elixir-europe.org/events/converge-industry-workshop 2020-12-16 09:00:00 UTC 2020-12-16 15:00:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom CB10 1SD [] [] [] workshops_and_courses [] []
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