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94 events found

Organizer: VIB Bioinformatics Core 

and

City: Bogota  or Heidelberg  or Niel  or Sevilla  or Harpenden  or Bielefeld  or Ghent  or Leuven 

  • CLC Bio Main Workbench, Leuven

    17 February 2017

    Leuven, Belgium

    Elixir node event
    CLC Bio Main Workbench, Leuven https://tess.elixir-europe.org/events/clc-bio-main-workbench-leuven You will learn to: work with the CLC Main Workbench user interface: create folders, import data, adjust settings... open sequences, view and manipulate annotations align sequences and perform BLAST searches virtually PCR-amplify a gene and insert it into a vector assemble sequences generated by Sanger sequencing into contigs and find conflicts between sequence reads​ 2017-02-17 13:00:00 UTC 2017-02-17 16:00:00 UTC VIB Bioinformatics Core O&N4 room 07.339 Gasthuisberg, Leuven, Belgium O&N4 room 07.339 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • GATK workshop

    20 - 22 February 2017

    Leuven, Belgium

    Elixir node event
    GATK workshop https://tess.elixir-europe.org/events/gatk-workshop This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. You will learn  why each step is essential to the variant discovery process what are the operations performed on the data at each step how to use the GATK tools to get the most accurate and reliable results out of your dataset. • samtools Familiarity with Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non-human data, and we will address some questions regarding adaptations that are needed for analysis of non-human data, but we will not go into much detail on those points​. The training will take 3 days, you can register for each day separately 2017-02-20 09:30:00 UTC 2017-02-22 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Vlaams-Brabant Belgium 3010 Sequence analysis [] [] [] [] [] GATKBroad's Genome Analysis Toolkit
  • Hands-on introduction to Perl programming

    6 - 13 March 2017

    Leuven, Belgium

    Elixir node event
    Hands-on introduction to Perl programming https://tess.elixir-europe.org/events/hands-on-introduction-to-perl-programming Learning the basics of Perl programming: different variables, reading files, writing files, regex. Being able to write small scripts to parse text files Using Perl in windows. Day 2 an example about parsing through a list of files introduction into Perl one-liners subroutines and libraries downloading and using libraries ​​​ 2017-03-06 09:30:00 UTC 2017-03-13 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Prep course for Biopython

    31 March 2017

    Leuven, Belgium

    Elixir node event
    Prep course for Biopython https://tess.elixir-europe.org/events/prep-course-for-biopython This training is an introduction to the Biopython training. This training is intended for people who have no experience with Linux and will teach them all knowledge of Linux command line that is required to successfully follow the Biopython training. If you want to follow  the Biopython training​ and you have no experience with Linux command line, you have to follow this introduction.  2017-03-31 09:30:00 UTC 2017-03-31 17:00:00 UTC VIB Bioinformatics Core O&N4 room 06.239 Gasthuisberg, Leuven, Belgium O&N4 room 06.239 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • Electronic Lab Notebook Introduction - Ghent

    18 April 2017

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent-638a1f0b-2d27-4f09-b291-72bee6d64baa 2017-04-18 10:00:00 UTC 2017-04-18 12:00:00 UTC VIB Bioinformatics Core PC room V114 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • RNA-Seq prep course

    25 April 2017

    Leuven, Belgium

    Elixir node event
    RNA-Seq prep course https://tess.elixir-europe.org/events/rna-seq-prep-course 2017-04-25 09:30:00 UTC 2017-04-25 16:00:00 UTC VIB Bioinformatics Core Gasthuisberg O&N4 room 07.339, Leuven, Belgium Gasthuisberg O&N4 room 07.339 Leuven Belgium 3000 [] [] [] [] [] []
  • Initiation GIMP and Inkscape Ghent

    2 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent 2017-05-02 09:00:00 UTC 2017-05-02 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation GIMP and Inkscape Leuven

    4 May 2017

    Leuven, Belgium

    Elixir node event
    Initiation GIMP and Inkscape Leuven https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-leuven 2017-05-04 09:00:00 UTC 2017-05-04 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Initiation GIMP and Inkscape - Ghent

    9 May 2017

    Ghent, Belgium

    Elixir node event
    Initiation GIMP and Inkscape - Ghent https://tess.elixir-europe.org/events/initiation-gimp-and-inkscape-ghent-bd18f6fb-c469-418d-8b9e-bd73e73ce890 2017-05-09 09:00:00 UTC 2017-05-09 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Centre, Ghent, Belgium Bio-Accelerator Meeting Centre Ghent Belgium 9052 [] [] [] [] [] []
  • Initiation to Cytoscape

    2 June 2017

    Leuven, Belgium

    Elixir node event
    Initiation to Cytoscape https://tess.elixir-europe.org/events/initiation-to-cytoscape In this course, you will be introduced to the basics of Cytoscape, and to more advanced functionalities such as data integration and data analysis using Cytoscape plugins. The list of topics covered in this hands-on training: Cytoscape is a free, Open Source bioinformatics environment for integration, visualisation, and query of biological networks.? Registration is open for VIB and non-VIB employees and is only available on this website. For any questions about this training, contact bits*Replace*With*At*Sign*vib.be 2017-06-02 09:30:00 UTC 2017-06-02 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven Hotel, Leuven, Belgium Park Inn by Radisson Leuven Hotel Leuven Belgium 3010 [] [] [] [] [] []
  • In silico cloning with SnapGene, Leuven

    8 June 2017

    Leuven, Belgium

    Elixir node event
    In silico cloning with SnapGene, Leuven https://tess.elixir-europe.org/events/in-silico-cloning-with-snapgene-leuven 2017-06-08 13:30:00 UTC 2017-06-08 16:30:00 UTC VIB Bioinformatics Core O&N4 room 06.239 Gasthuisberg, Leuven, Belgium O&N4 room 06.239 Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • Functional Plant Bioinformatics - PLAZA

    14 - 15 September 2017

    Ghent, Belgium

    Elixir node event
    Functional Plant Bioinformatics - PLAZA https://tess.elixir-europe.org/events/functional-plant-bioinformatics-plaza 2017-09-14 10:00:00 UTC 2017-09-15 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator Meeting Center, Ghent, Belgium Bio-Accelerator Meeting Center Ghent Belgium 9052 [] [] [] [] [] []
  • Analysis of metabolome data

    15 January 2018

    Ghent, Belgium

    Elixir node event
    Analysis of metabolome data https://tess.elixir-europe.org/events/analysis-of-metabolome-data This training is intended for people who have a basic knowledge of R. Participants who have never worked with R should first follow the course Basic statistics in R.  The morning session will handle differences affecting data handling between GC-MS and LC-MS.  2018-01-15 09:30:00 UTC 2018-01-15 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Introduction to the analysis of NGS data, extra session

    28 January 2018

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data, extra session https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-extra-session b'\nThis training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of:\r\n- The Illumina platform\r\n- NGS data formats and file handling\r\n- Quality control of NGS data\r\n- Assembly and mapping of NGS data\r\n- Supporting IT: Galaxy and GenePattern platform\n\r\n\n This training is an introduction to \'Hands on introduction to ChIP-Seq analysis\', Hands-on introduction to NGS variant analysis\', \'GATK training\', and \'RNA-Seq analysis for differential expression in GenePattern\'. If you want to follow one of these trainings but you have no experience with NGS data you should follow this introduction. \n\r\n\n' 2018-01-28 09:30:00 UTC 2018-01-28 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Probabilistic programming with (R)Stan, a new approach to linear models

    26 February 2018

    Leuven, Belgium

    Elixir node event
    Probabilistic programming with (R)Stan, a new approach to linear models https://tess.elixir-europe.org/events/probabilistic-programming-with-r-stan-a-new-approach-to-linear-models - rstan R package (https://cran.r-project.org/web/packages/rstan/vignettes/rstan.html)​ ​ 2018-02-26 09:30:00 UTC 2018-02-26 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to Biopython

    29 - 30 March 2018

    Ghent, Belgium

    Elixir node event
    Introduction to Biopython https://tess.elixir-europe.org/events/introduction-to-biopython ​​Understand what Biopython is and what it can do. Learn how to get Biopython running. Learn how to retrieve data records from NCBI. Learn how to read and write sequence files. Learn how to run BLAST from Python and read the results. Learn how to read and write phylogenetic tree files. Learn how to read and write 3D structure files. Learn how to use the Biopython documentation, examples, and where to find help. Understand what alternatives to Biopython exist and what they can do.   Biopython is the best-known Python library to process biological data. This training is aimed to empower you to use Biopython to make your research more efficient. The first day of the training is to give an overview of Biopython. You are going to start with your first steps in Biopython on the command line. Afterwards, you will take a tour of the most important components: sequences, NCBI queries, BLAST, trees, and 3D structures. You will try each of these modules on practical examples. Please don't hesitate to ask questions about Python basics or particular data formats (e.g. XML or NGS data). The second day of the training is to broaden your perspective: What other features does the library have? How can you use the documentation effectively? What is Biopython not capable of?  What can I do to visualize my data? Are there alternatives? If you have your own data that you would like to work on with Biopython in more detail, there is room for that. For me, the most important thing is to identify concrete Python modules and functions that help you to get your research done. Participants are encouraged to submit a description of their research topic and/or the questions they would like to answer with Biopython. Additionally, participants can bring their own data that they would like to process in Python to the training. 2018-03-29 09:30:00 UTC 2018-03-30 17:00:00 UTC VIB Bioinformatics Core BioAccelerator, Ghent, Belgium BioAccelerator Ghent Belgium 9052 [] [] [] [] [] []
  • My code changed and using Git I know where and when

    24 April 2018

    Ghent, Belgium

    Elixir node event
    My code changed and using Git I know where and when https://tess.elixir-europe.org/events/my-code-changed-and-using-git-i-know-where-and-when 2018-04-24 15:00:00 UTC 2018-04-24 18:00:00 UTC VIB Bioinformatics Core Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor, Ghent, Belgium Ghent VIB-UGent Research Building LEAF room (E124) right side of the building, first floor Ghent Belgium 9052 [] [] [] [] [] []
  • Ensembl Browser Workshop

    4 May 2018

    Leuven, Belgium

    Elixir node event
    Ensembl Browser Workshop https://tess.elixir-europe.org/events/ensembl-browser-workshop-b667a41e-0be6-404c-b081-8798a934aef8 "There are probably quite few people out there who all assume that Ensembl today is the same as it was years ago. It is not. With many new features and datasets incorporated/interlinked, it offers data exploration like never before. This course was a very useful update on what Ensembl has become" Browser workshop, CRUK, April 2016 2018-05-04 09:30:00 UTC 2018-05-04 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • A tour of machine learning - classification

    12 June 2018

    Ghent, Belgium

    Elixir node event
    A tour of machine learning - classification https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification ok Python Numpy/Pandas 2018-06-12 09:30:00 UTC 2018-06-12 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Transcriptomics and Single Cell RNA-Seq Analysis

    26 - 31 August 2018

    Leuven, Belgium

    Elixir node event
    Transcriptomics and Single Cell RNA-Seq Analysis https://tess.elixir-europe.org/events/transcriptomics-and-single-cell-rna-seq-analysis-c68d0326-09c8-41a4-90d9-c38feeab6d45 2018-08-26 09:30:00 UTC 2018-08-31 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Linux for bioinformatics

    5 - 12 November 2018

    Ghent, Belgium

    Elixir node event
    Linux for bioinformatics https://tess.elixir-europe.org/events/linux-for-bioinformatics b'\nAfter this training you will\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nfeel comfortable using Linux \r\n\r\n \r\nknow how software works on Linux and how to install and use it  \r\n\r\n \r\nuse bash to execute\r\n commands in Linux and know your way around the file system\r\n\r\n \r\nhave an overview of Linux tools that are extremely useful for bioinformatics\r\n\r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nSummary\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nThis training is intended for all Linux novices who\r\nwant to learn the basics of Linux without getting too much technical details.\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nThis hands-on training will show you how to\r\neffectively use Linux Ubuntu. Bioinformatics depends heavily on Linux-based computers and software. A lot of good scientific\r\nsoftware is written specifically for Linux. Additionally, Linux has most popular programming languages (e.g.Python, Perl, C) already installed and\r\nready to use! This\r\ntraining will teach you all you need to know to swiftly start using Linux, be it on the server of your department, or on your own computer (even if you\'re already running\r\nWindows or MacOS).\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n \r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nTentative schedule​\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nPrior to the training session, you will receive a poll to ask you your personal goals by following this training sesion. Depending on the outcome, the schedule will be adjusted.\r\n \r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\nDay 1\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nUNIX fundamentals and other Linux distributions\r\n\r\n \r\nInstall\r\n Linux distributions: test it harmlessly by running in live mode\r\n\r\n \r\nDifferent methods of\r\n installing software and where to get it\r\n\r\n \r\nThe UNIX file system \r\n\r\n \r\nLUNCH\r\n\r\n \r\nUsers on Linux and  access rights to view, create and execute\r\n\r\n \r\nGentle introduction\r\n to the command line in linux\r\n\r\n \r\n\n\r\n \r\nbasics\r\n of the command line\r\n\r\n \r\nbest tips enhancing\r\n your command line experience\r\n\r\n \r\nreading and writing\r\n contents in the command line\r\n\r\n \n\r\n\r\n\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\nDay 2\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\n\r\n \r\nBioinformatics in Linux\r\n\r\n \r\n\n\r\n \r\ninstalling useful\r\n bioinformatics and programming tools\r\n\r\n \r\nanalysing text\r\n output from bioinformatics tools\r\n\r\n \r\npassing outputs from\r\n and to different tools \r\n\r\n \r\nscripting\r\n in Linux\r\n\r\n \n\r\n\r\n \r\nLUNCH\r\n\r\n \r\nLinux\r\n in a network\r\n\r\n\r\nLinux playground: Open questions. Play around with your Linux to make it fit your (bioinformatics)\r\n needs. ​​​​​​​​​​​​​​​​​​\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n​​\n\r\n​​​​​\n \r\n\r\n\n \r\n\r\n\n' 2018-11-05 09:30:00 UTC 2018-11-12 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • Hands-On introduction to NGS variant analysis

    9 - 16 November 2018

    Leuven, Belgium

    Elixir node event
    Hands-On introduction to NGS variant analysis https://tess.elixir-europe.org/events/hands-on-introduction-to-ngs-variant-analysis b'Using a full publicly available chromosome read-set from one of the 1000 genome sample:\r\n\r\n\n This training gives an introduction to the use of several\r\npopular NGS analysis software packages under the GenePattern Graphical\r\ninterface.\r\n\n Skills required to follow this training include basic knowledge of Illumina NGS read structure. People who lack knowledge of Illumina reads should follow the \'Introduction to the analysis of NGS data\' training. Depending on the number of participants (max 20), it might be that you have to share the laptop with one other participant but you can also choose to bring your own laptop for this training session.​\n\r\n\n \n\nsimilar workflow(s) using unix operative system and the command-line\r\napproach.​\r\n​similar workflow(s) using commercial products like the \'CLC genomics workbench\'\r\nsimilar workflow(s) using the free Galaxy GUI (although perfectly doable using the acquired knowledge)\r\nvariant analysis at multi-genome level & GWAS (<- advanced computing and statistical expertise required).\r\nstructural variant analysis (large indels, translocations, CNV) as being too complex with no all-in-one tool available.\n\r\n\r\n​​​​​​​​​​​​​​​​​\n' 2018-11-09 09:30:00 UTC 2018-11-16 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Electronic Lab Notebook Introduction - Ghent

    14 November 2018

    Ghent, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Ghent https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-ghent 2018-11-14 10:00:00 UTC 2018-11-14 12:00:00 UTC VIB Bioinformatics Core PC room V114 - 1st floor front building VIB-UGent Research Building, Ghent, Belgium PC room V114 - 1st floor front building VIB-UGent Research Building Ghent Belgium 9052 [] [] [] [] [] []
  • Electronic Lab Notebook Introduction - Leuven

    15 November 2018

    Leuven, Belgium

    Elixir node event
    Electronic Lab Notebook Introduction - Leuven https://tess.elixir-europe.org/events/electronic-lab-notebook-introduction-leuven This training is an introduction to the Electronic Laboratory Notebook (ELN) implemented at VIB. This training is intended for all new VIB researchers and will teach you the basic knowledge required to successfully document in ELN. The training consists of two parts: Introduction: Access​ ways to your notebook, ELN installation instructions and house rules, where to find documentation and get support Hands-on-demo: Creating notebooks/experiments, importing and exporting (MS Office) files, sharing data, using templates, advanced searching, printing, tips and tricks This training is mandatory for all new VIB co-workers and requires an active VIB account. In order to check your username and password, go to https://storefront.vib.be, if login fails send an e-mail to eln*Replace*With*At*Sign*vib.be. People who want to join this training can register here! 2018-11-15 13:00:00 UTC 2018-11-15 15:00:00 UTC VIB Bioinformatics Core O&N4 room 07.339 Campus Gasthuisberg, Leuven, Belgium O&N4 room 07.339 Campus Gasthuisberg Leuven Belgium 3000 [] [] [] [] [] []
  • Introductory statistics in GraphPad Prism

    18 December 2018

    Leuven, Belgium

    Elixir node event
    Introductory statistics in GraphPad Prism https://tess.elixir-europe.org/events/introductory-statistics-in-graphpad-prism b'In this hands-on session, you will apply the theory that you learnt in the Basic statistics theory training in Prism. The following topics will be covered:\nWhat is Prism? Where to find more information? How to install and use it?\r\nHow to use Prism to handle data: reading data\r\nHow to use Prism to create graphics\r\nHow to use basic statistical techniques in Prism: mean, variance, confidence intervals, correlations, hypothesis testing...\n\n\r\n\n  \r\n\n  \r\n\n' 2018-12-18 09:30:00 UTC 2018-12-18 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to the analysis of NGS data

    11 January 2019

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data b'\nThis training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of:\r\n- The Illumina platform\r\n- NGS data formats and file handling\r\n- Quality control of NGS data\r\n- Assembly and mapping of NGS data\r\n- Supporting IT: Galaxy and GenePattern platform\r\n\r\n\n This training is an introduction to \'Hands on introduction to ChIP-Seq analysis\', Hands-on introduction to NGS variant analysis\', \'GATK training\', and \'RNA-Seq analysis for differential expression in GenePattern\'. If you want to follow one of these trainings but you have no experience with NGS data you should follow this introduction. \n\r\n\r\n\n' 2019-01-11 09:30:00 UTC 2019-01-11 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Basic statistics in R, Ghent

    15 - 29 January 2019

    Ghent, Belgium

    Elixir node event
    Basic statistics in R, Ghent https://tess.elixir-europe.org/events/basic-statistics-in-r-ghent b'\nGet an idea of what R and Rstudio is\r\nUse R to handle data: creating, reading, reformatting and writing data\r\nUse R to create graphics\r\nUse basic statistical techniques in R : normality tests, t-tests, wilcoxon tests, chi square tests, correlations, survival analysis...\r\nWrite and use R scripts\n\r\n\n \nThis training gives an introduction to the use of the statistical software language R. R is a language for data analysis and graphics. This introduction to R is aimed at beginners. The training covers data handling, graphics, and basic statistical techniques. \r\nR is for free and for more information you can visit the site the CRAN web site.This training is an introduction to the use of R and RStudio and stops at very basic analyses (t-tests and non-parametric equivalents). A full overview of statistical analyses in R including regression, ANOVA will be given in the follow-up training Basic statistics in R, part II.\n\r\n \r\nRequirements\r\nThe training is intended for people who have no experience with R. However, understanding of basic statistical concepts is required, such as data types, normal distribution, descriptive statistics, tests for comparing groups... If you don\'t have sufficient statistical background you are strongly encouraged to attend the Basic statistics theorytraining. \r\nThis training is recommended for people with no experience in R who are planning to follow a training that requires some R background, like the mass spectrometry , the single cell RNA-Seq and the bulk RNA-Seq training....\n\r\n\n' 2019-01-15 09:30:00 UTC 2019-01-29 17:00:00 UTC VIB Bioinformatics Core Bio-Accelerator, Ghent, Belgium Bio-Accelerator Ghent Belgium 9052 [] [] [] [] [] []
  • The Mesoscopy challenge

    22 January 2019

    Leuven, Belgium

    Elixir node event
    The Mesoscopy challenge https://tess.elixir-europe.org/events/the-mesoscopy-challenge To give more insights on how to tackle the mesoscale challenge, this training event will showcase different approaches to mesoscale imaging from both VIB research labs as well as renowned international scientists. Presentations will span different imaging techniques including light sheet microscopy, slide scanning, phenotypic plant imaging and microCT. The event will also highlight novel applications on sample handling and will introduce you to the opportunities in cutting edge large scale imaging and show you how it can enhance your own research. 2019-01-22 09:00:00 UTC 2019-01-22 00:00:00 UTC VIB Bioinformatics Core Provinciehuis Vlaams-Brabant, Leuven, Belgium Provinciehuis Vlaams-Brabant Leuven Belgium 3010 [] [] [] [] [] []
  • Analysis of single cell RNA-Seq data from 10x Genomics

    4 - 5 February 2019

    Ghent, Belgium

    Elixir node event
    Analysis of single cell RNA-Seq data from 10x Genomics https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-from-10x-genomics 2019-02-04 09:30:00 UTC 2019-02-05 17:00:00 UTC VIB Bioinformatics Core iGent Tower, Ghent, Belgium iGent Tower Ghent Belgium 9052 [] [] [] [] [] []
  • RNA-Seq analysis for differential expression

    11 - 18 February 2019

    Leuven, Belgium

    Elixir node event
    RNA-Seq analysis for differential expression https://tess.elixir-europe.org/events/rna-seq-analysis-for-differential-expression-in-genepattern b'You will execute a complete analysis workflow in GenePattern, Galaxy or command line and R to detect differential expression between two conditions\n\r\n\r\n\n We\'ll go through the different steps of the workflow:\r\n\n \nQuality control of the sequence reads to detect biases or contaminating adapters.\r\nMapping of the reads to the reference genome with use of a transcript database model.\r\nQuality control  of the mapping results.\r\nAdjusting the mapping data to compensate for artefacts like duplicates.\r\nCalculate transcript counts usable for differential expression and merging of count tables \n\r\nComputing differential expression using  DESeq2.\n\r\n\r\n\n • fastQC • trimmomatic• Groomer • STAR• samtools• Picard • RSeQC• HTSeq• R - RStudio - Bioconductor - various packages \n\r\n\r\n\n  \r\nFamiliarity with \n \nRNA-seq assembly\r\nRNA-seq analysis for isoform detection\r\nRNA-seq analysis for detection of short RNA species\n\r\n\n \n.Organised by the VIB Bioinformatics Core​\n\r\n\n' 2019-02-11 09:30:00 UTC 2019-02-18 17:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []

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