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10 events found

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  • Introduction to RNA-seq analysis in R

    24 June 2019

    Sheffield, United Kingdom

    Introduction to RNA-seq analysis in R https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-4ff2ae93-b96a-4dc0-8f92-957042a88c1d In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2019-06-24 08:30:00 UTC 2019-06-24 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Cluster Computing for Life Sciences

    1 - 2 July 2019

    SURF office, Netherlands

    Elixir node event
    Cluster Computing for Life Sciences https://tess.elixir-europe.org/events/cluster-computing-for-life-sciences-62004a45-ceca-4ccb-9299-8b2b48373ec3 Learn basic skills in high-performance computing. In this workshop you will learn how to work more efficiently with your computer via the command line, how to automate your data analysis pipelines and how to use compute cluster. The workshop content… The post Cluster Computing for Life Sciences appeared first on Dutch Techcentre for Life Sciences. 2019-07-01 09:00:00 UTC 2019-07-02 00:00:00 UTC SURF office, Utrecht, Netherlands, SURF office, Netherlands SURF office, Utrecht, Netherlands SURF office Netherlands [] [] [] workshops_and_courses [] []
  • Sharing Bioinformatics Training and Building a Region-wide Programme

    9 - 10 July 2019

    Sheffield, United Kingdom

    Sharing Bioinformatics Training and Building a Region-wide Programme https://tess.elixir-europe.org/events/sharing-bioinformatics-training-and-building-a-region-wide-programme High-throughput genomic data analysis is now a defining skill in the life sciences. There is already a shortage of researchers who can bridge the gap between computational approaches to data and biological insights, and this demand is only getting stronger. Bioinformatics training is under-provisioned in the North of England, with many small Bioinformatics teams at different institutes lacking the resources to deliver a full Bioinformatics training programme. 2019-07-09 09:30:00 UTC 2019-07-10 14:30:00 UTC Sheffield, United Kingdom Sheffield United Kingdom [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Getting started on the high-throughput data processing platform

    28 August 2019

    SURF office, Netherlands

    Elixir node event
    Getting started on the high-throughput data processing platform https://tess.elixir-europe.org/events/getting-started-on-the-high-throughput-data-processing-platform Vastly increasing data volumes and data complexity imply that researchers require novel solutions to large scale cluster computing. This workshop aims to provide an introduction and hands-on experience with our new solution to this problem: “a new and versatile platform… The post Getting started on the high-throughput data processing platform appeared first on Dutch Techcentre for Life Sciences. 2019-08-28 09:00:00 UTC 2019-08-28 00:00:00 UTC SURF office, Utrecht, Netherlands, SURF office, Netherlands SURF office, Utrecht, Netherlands SURF office Netherlands [] [] [] workshops_and_courses [] []
  • Data Science in Python

    2 - 3 September 2019

    Leuven, Belgium

    Elixir node event
    Data Science in Python https://tess.elixir-europe.org/events/data-science-in-python-ad0b7ba3-98d3-49d5-804a-d883beb39c63 After this course you should be able to: Recall how to define variables and most common data structures in Python Use conditions and loops in Python Practice reading and writing files with Python Explain how to write user-defined functions and modules in Python Use existing in-built as well as third-party Python libraries Solve more complex exercises using these concepts 2019-09-02 09:00:00 UTC 2019-09-03 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to the analysis of NGS data

    6 September 2019

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-4d6b015d-1f0b-4829-8a43-a9f61f9c7d02 This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Assembly and mapping of NGS data - Supporting IT: Galaxy and GenePattern platform 2019-09-06 09:00:00 UTC 2019-09-06 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Bulk RNASeq analysis for differential expression

    9 - 20 September 2019

    Leuven, Belgium

    Elixir node event
    Bulk RNASeq analysis for differential expression https://tess.elixir-europe.org/events/bulk-rnaseq-analysis-for-differential-expression During this training you will: execute a complete workflow at command line or in GenePattern to go from raw fastq files to count files execute a complete workflow in R to detect differential expression between two conditions initiate functional annotation and interpretation of the list of differentially expressed genes   2019-09-09 09:00:00 UTC 2019-09-20 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Metagenomics: Data Analysis and Interpretation

    16 - 19 September 2019

    Norwich, United Kingdom

    Metagenomics: Data Analysis and Interpretation https://tess.elixir-europe.org/events/metagenomics-data-analysis-and-interpretation This course will provide an overview of the main aspects involved in metagenomics data analysis and discussion around the interpretation and actual examples of the impact and applications of metagenomics derived research. A substantial part of the course will be devoted to hands-on experience with bioinformatics resources and tools relevant in metagenomics data analysis. Participants will start with an overview of NGS technologies, a look at experimental approaches and emerging technologies, including a tour of Earlham Institute’s Genomic Pipelines laboratories. Then the remainder of the course will be spent in front of the computers learning how to produce metagenomic assemblies, and taking participants from data to publication-ready figures. 2019-09-16 09:00:00 UTC 2019-09-19 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ [] training@earlham.ac.uk [] [] workshops_and_courses [] []
  • Analysis of 16S rRNA metagenomic experiments

    4 October 2019

    Leuven, Belgium

    Elixir node event
    Analysis of 16S rRNA metagenomic experiments https://tess.elixir-europe.org/events/analysis-of-16s-rrna-metagenomic-experiments Processing and statistical analysis of 16S rRNA metagenomic experiments using R & Lotus pipeline. The following analytical steps from raw data to communicable results will be on the programme: - Preparation of sequencing data, read filtering, data cleaning - Data normalization - Numerical ecology: Clustering, Ordination, Diversity, Modelling - Univariate & Multivariate Statistics - Biological interpretation 2019-10-04 09:00:00 UTC 2019-10-04 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition)

    10 - 11 October 2019

    Leuven, Belgium

    The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition) https://tess.elixir-europe.org/events/the-brain-mosaic-cellular-heterogeneity-in-the-cns-2nd-edition Recent advances in technology now allow us to explore multiple aspects of heterogeneity at the single cell level. Nowhere is this more important than in the Central Nervous System (CNS), where cellular heterogeneity has profound effects on all aspects of normal brain function and behavior and explains important aspects of disease pathology. With the second edition of the Brain Mosaic conference we aim to bring together leaders in this emerging discipline to discuss how it is advancing our knowledge of CNS function and disease. Speakers at this neuroscience meeting on ‘single cell’ will emphasize the multi-disciplinary nature of the field in several sessions: • Single cell sequencing and cell diversity • Spatial transcriptomics • New developments in technology and bioinformatics • CNS sequencing and relevance to disease research • Connections an activity Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 8 September 2019 • Late Registration: 26 September 2019 • Abstract deadline: 29 August 2019 2019-10-10 08:00:00 UTC 2019-10-11 18:00:00 UTC VIB Conferences KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat, Leuven, Belgium KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat Leuven Vlaams-Brabant Belgium 3000 Bioinformatics Transcriptomics Sequencing [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be [] [] meetings_and_conferences [] Single cell sequencing Sequencingcell diversitySpatial transcriptomicsTranscriptomicstranscriptomicsAlzheimers Clinical Trials And StudiesAlzheimers DiseaseAmnesiaAnimal Models In DementiaAnxiety Autoimmune Disorders & Multiple SclerosisBehavioral IssuesBiopsychiatry Blood-Brain BarrierBrain DiagnosisBrain Disease & FailureBrain InjuryBrain TumourCentral Nervous SystemCerebrovascular DiseaseChild NeurologyClinical NeurophysiologyCNS TumorsCognitive DisordersDementiaDementia CareDemyelinationDiagnosis And TherapyEpilepsyGenetics Genetics And Epigenetics Geriatric NeurologyGut- Brain AxisHeadacheIntervention NeuroradiologyMeningitisMental HealthMental Health NursingMetastatisMovement DisordersMultiple SclerosisMultiple Sclerosis DiagnosisNervous SystemNeural EngineeringNeural EnhancementNeuro-Oncology NeuroanaatomyNeuroanatomyNeurocritical CareNeurodegenerationNeurodegenerative DisorderNeurodegenerative DisordersNeurogeneticsNeuroimagingNeuroimmunologyNeurological DisordersNeurological Disorders And StrokeNeurological InfectionsNeurological SurgeryNeurologistNeurologyNeuromedicinesNeuromuscular MedicineNeuronal AutoantibodiesNeuropathyNeuropeptidesNeuropharmacologyNeuroscienceNeurosurgeryNeurotoxicologyNeurotoxinsNeurotransmissionNeurotransmittersParkinsonParkinsons DiseasePediatric NeurologyPharmacology Psychiatry Psychology PsychoneuroimmunologyRecent Research And Case StudiesRehabilitation TherapyStem Cell Treatment For Neurological DisordersStrokesTraumatic Brain InjuryCNS sequencing disease researchbioinformatics• New developments in technology
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