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  • CAS Personalized Molecular Oncology

    1 October 2018 - 31 July 2019

    Basel, Switzerland

    Elixir node event
    CAS Personalized Molecular Oncology https://tess.elixir-europe.org/events/cas-personalized-molecular-oncology The CAS in Personalized Molecular Oncology aims at providing a comprehensive and integrative view of the field, by covering all the aspects involved along the pipeline: (i) tumor biology and genetics, (ii) molecular pathology, (iii) clinical bioinformatics, and (iv) clinical oncology. First of its kind in Switzerland, it will focus on the methodologies used to generate, analyze and interpret patients’ molecular profiles, also touching upon the associated technical, regulatory and ethical challenges. As an important outcome, it will establish a common language between the wide range of professionals involved in the personalized oncology process, from biologists, bioinformaticians, pathologists to clinicians, enabling an efficient and better informed use of e.g. genomic data for both routine clinical practice and clinical research. Moreover, it should empower professionals to develop a vision for their own institution, by critically evaluating the potential benefits and limitations of current and future developments in personalized oncology. The CAS is organized jointly by the University Hospital of Basel, the University Hospital of Lausanne, and the SIB Swiss Institute of Bioinformatics. 2018-10-01 09:00:00 UTC 2019-07-31 17:00:00 UTC SIB Swiss Institute of Bioinformatics Pathologie Universitätsspital Basel, 40, Schönbeinstrasse, Basel, Switzerland Pathologie Universitätsspital Basel, 40, Schönbeinstrasse Basel Switzerland University Hospital of BaselSIB Swiss Institute of BioinformaticsUniversity Hospital of Lausanne Dr. Aitana Lebrand Clinical Bioinformatics SIB | Swiss Institute of Bioinformatics Ch. des Mines 9 CH-1202 Genève Tel. +41 (0)22 379 02 67 aitana.lebrand@sib.swiss [] Professionals involved in personalized molecular oncology, including laboratory managers, biologists, bioinformaticians, pathologists, geneticists, clinicians and pharmaceutical company employees. workshops_and_courses registration_of_interest Tumor biology and geneticsMolecular pathologyClinical BioinformaticsClinical oncology
  • ISMB/ECCB 2019

    21 - 25 July 2019

    Basel, Switzerland

    ISMB/ECCB 2019 https://tess.elixir-europe.org/events/ismb-eccb-2019 ISMB/ECCB 2019 is the largest and most high profile annual meeting of scientists working in computational biology and provides an intense multidisciplinary forum for disseminating the latest developments in computational tools for data driven biological research. ELIXIR will be present at this year's ISMB/ECCB 2019 conference with three dedicated Tech Tracks on Monday 22 July and a COSI on Scalable Plant-Research in Cloud Environments on Wednesday 24 July. ELIXIR will also be have a booth (booth numbers 23 and 24) in the exhibition area with information about our services including Global Alliance, Galaxy, Plants, TeSS and Beacons.  Further details about the conference, including how to register, can be found on the ISMB/ECCB 2019 website. 2019-07-21 10:00:00 UTC 2019-07-25 17:00:00 UTC Congress Center Basel, Basel, Switzerland Congress Center Basel Basel Switzerland 4058 [] [] [] meetings_and_conferences [] []
  • Data Science in Python

    2 - 3 September 2019

    Leuven, Belgium

    Elixir node event
    Data Science in Python https://tess.elixir-europe.org/events/data-science-in-python-ad0b7ba3-98d3-49d5-804a-d883beb39c63 After this course you should be able to: Recall how to define variables and most common data structures in Python Use conditions and loops in Python Practice reading and writing files with Python Explain how to write user-defined functions and modules in Python Use existing in-built as well as third-party Python libraries Solve more complex exercises using these concepts 2019-09-02 09:00:00 UTC 2019-09-03 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to the analysis of NGS data

    6 September 2019

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-4d6b015d-1f0b-4829-8a43-a9f61f9c7d02 This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Assembly and mapping of NGS data - Supporting IT: Galaxy and GenePattern platform 2019-09-06 09:00:00 UTC 2019-09-06 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Bulk RNASeq analysis for differential expression

    9 - 20 September 2019

    Leuven, Belgium

    Elixir node event
    Bulk RNASeq analysis for differential expression https://tess.elixir-europe.org/events/bulk-rnaseq-analysis-for-differential-expression During this training you will: execute a complete workflow at command line or in GenePattern to go from raw fastq files to count files execute a complete workflow in R to detect differential expression between two conditions initiate functional annotation and interpretation of the list of differentially expressed genes   2019-09-09 09:00:00 UTC 2019-09-20 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Analysis of 16S rRNA metagenomic experiments

    4 October 2019

    Leuven, Belgium

    Elixir node event
    Analysis of 16S rRNA metagenomic experiments https://tess.elixir-europe.org/events/analysis-of-16s-rrna-metagenomic-experiments Processing and statistical analysis of 16S rRNA metagenomic experiments using R & Lotus pipeline. The following analytical steps from raw data to communicable results will be on the programme: - Preparation of sequencing data, read filtering, data cleaning - Data normalization - Numerical ecology: Clustering, Ordination, Diversity, Modelling - Univariate & Multivariate Statistics - Biological interpretation 2019-10-04 09:00:00 UTC 2019-10-04 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition)

    10 - 11 October 2019

    Leuven, Belgium

    The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition) https://tess.elixir-europe.org/events/the-brain-mosaic-cellular-heterogeneity-in-the-cns-2nd-edition Recent advances in technology now allow us to explore multiple aspects of heterogeneity at the single cell level. Nowhere is this more important than in the Central Nervous System (CNS), where cellular heterogeneity has profound effects on all aspects of normal brain function and behavior and explains important aspects of disease pathology. With the second edition of the Brain Mosaic conference we aim to bring together leaders in this emerging discipline to discuss how it is advancing our knowledge of CNS function and disease. Speakers at this neuroscience meeting on ‘single cell’ will emphasize the multi-disciplinary nature of the field in several sessions: • Single cell sequencing and cell diversity • Spatial transcriptomics • New developments in technology and bioinformatics • CNS sequencing and relevance to disease research • Connections an activity Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 8 September 2019 • Late Registration: 26 September 2019 • Abstract deadline: 29 August 2019 2019-10-10 08:00:00 UTC 2019-10-11 18:00:00 UTC VIB Conferences KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat, Leuven, Belgium KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat Leuven Vlaams-Brabant Belgium 3000 Bioinformatics Transcriptomics Sequencing [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be [] [] meetings_and_conferences [] Single cell sequencing Sequencingcell diversitySpatial transcriptomicsTranscriptomicstranscriptomicsAlzheimers Clinical Trials And StudiesAlzheimers DiseaseAmnesiaAnimal Models In DementiaAnxiety Autoimmune Disorders & Multiple SclerosisBehavioral IssuesBiopsychiatry Blood-Brain BarrierBrain DiagnosisBrain Disease & FailureBrain InjuryBrain TumourCentral Nervous SystemCerebrovascular DiseaseChild NeurologyClinical NeurophysiologyCNS TumorsCognitive DisordersDementiaDementia CareDemyelinationDiagnosis And TherapyEpilepsyGenetics Genetics And Epigenetics Geriatric NeurologyGut- Brain AxisHeadacheIntervention NeuroradiologyMeningitisMental HealthMental Health NursingMetastatisMovement DisordersMultiple SclerosisMultiple Sclerosis DiagnosisNervous SystemNeural EngineeringNeural EnhancementNeuro-Oncology NeuroanaatomyNeuroanatomyNeurocritical CareNeurodegenerationNeurodegenerative DisorderNeurodegenerative DisordersNeurogeneticsNeuroimagingNeuroimmunologyNeurological DisordersNeurological Disorders And StrokeNeurological InfectionsNeurological SurgeryNeurologistNeurologyNeuromedicinesNeuromuscular MedicineNeuronal AutoantibodiesNeuropathyNeuropeptidesNeuropharmacologyNeuroscienceNeurosurgeryNeurotoxicologyNeurotoxinsNeurotransmissionNeurotransmittersParkinsonParkinsons DiseasePediatric NeurologyPharmacology Psychiatry Psychology PsychoneuroimmunologyRecent Research And Case StudiesRehabilitation TherapyStem Cell Treatment For Neurological DisordersStrokesTraumatic Brain InjuryCNS sequencing disease researchbioinformatics• New developments in technology
  • Introduction to RNA-Seq: From quality control to pathway analysis

    21 - 22 October 2019

    Basel, Switzerland

    Elixir node event
    Introduction to RNA-Seq: From quality control to pathway analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-9b1ad1ee-b319-4f6e-bdeb-6b6a297145b2 Overview This two-day course will present the theory and bioinformatics tools required to analyze RNA-seq gene expression data, from the raw data to the biological interpretation. 2019-10-21 09:00:00 UTC 2019-10-22 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Best practices in programming 2019

    5 - 6 November 2019

    Basel, Switzerland

    Elixir node event
    Best practices in programming 2019 https://tess.elixir-europe.org/events/best-practices-in-programming-2019 This workshop is organised by the SIB PhD Training Network. Priority is given to its members, but is open to everyone. 2019-11-05 09:00:00 UTC 2019-11-06 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Ligand-protein docking, and computer-aided drug design

    12 - 14 November 2019

    Basel, Switzerland

    Elixir node event
    Ligand-protein docking, and computer-aided drug design https://tess.elixir-europe.org/events/ligand-protein-docking-and-computer-aided-drug-design-b5c29e56-da43-431c-9283-e0ac2a452322 Overview This workshop aims to present basics on molecular visualization, ligand-protein docking and several computer-aided drug design tools developed at SIB. Numerous case examples are taken from different therapeutic fields. 2019-11-12 09:00:00 UTC 2019-11-14 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Statistics for Life Scientists

    2 - 4 December 2019

    Basel, Switzerland

    Elixir node event
    Statistics for Life Scientists https://tess.elixir-europe.org/events/statistics-for-life-scientists-e25eb89a-c498-4fa4-8a59-fda57cfb60d8 Overview Statistics are an integral aspect of scientific research, particularly for the life sciences which rely heavily on quantitative methodologies. 2019-12-02 09:00:00 UTC 2019-12-04 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Intermediate R

    9 - 11 December 2019

    Basel, Switzerland

    Elixir node event
    Intermediate R https://tess.elixir-europe.org/events/intermediate-r-ec2abb58-3433-4f1a-9ba4-b04b28549eeb Overview This 3-day intermediate course will move beyond simple scripts/recipes towards a more systematic understanding of R and its data structures. 2019-12-09 09:00:00 UTC 2019-12-11 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR Scientific Advisory Board meeting 2020

    11 - 12 February 2020

    Hinxton, United Kingdom

    ELIXIR Scientific Advisory Board meeting 2020 https://tess.elixir-europe.org/events/elixir-scientific-advisory-board-meeting-2020 The ELIXIR Scientific Advisory Board will hold their annual meeting from 11-12 February 2020 at the Wellcome Genome Campus in Hinxton, UK. Details of agenda and registration will be made available to participants. Contacts For all logistical inquiries, please contact: Melissa Balzano (melissa.balzano@elixir-europe.org)  Tel: +44 (0)1223 494305 For all documentation inquiries, please contact: Joana Wingender (joana.wingender@elixir-europe.org)  Tel: +44 (0)1223 492670 2020-02-11 09:00:00 UTC 2020-02-12 17:00:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom [] [] [] meetings_and_conferences [] []
  • 13th ELIXIR Board meeting (Hinxton)

    29 - 30 April 2020

    Hinxton, United Kingdom

    13th ELIXIR Board meeting (Hinxton) https://tess.elixir-europe.org/events/thirteenth-elixir-board-meeting-hinxton The thirteenth ELIXIR Board will take place at the Wellcome Genome Campus in Hinxton, UK From 29 - 30 April 2020. This meeting is only open to the ELIXIR Board and Observers. Agenda items and meeting documentation will be made available to Board members in due time.  Any inquiries regarding ELIXIR Board meetings should be sent to info@elixir-europe.org. 2020-04-29 09:00:00 UTC 2020-04-30 00:00:00 UTC Wellcome Genome Campus, Hinxton, United Kingdom Wellcome Genome Campus Hinxton United Kingdom CB10 1SD [] [] [] meetings_and_conferences [] []
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