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4 events found

Scientific topics: Data management  or Protein databases 

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City: Bogota  or Heidelberg  or Ghent  or Philadelphia  or San Francisco  or Amsterdam 

  • 11th Annual Portfolio Management

    3 - 4 November 2016

    Philadelphia, Panama

    11th Annual Portfolio Management https://tess.elixir-europe.org/events/11th-annual-portfolio-management Cambridge Healthtech Institute’s and the BioPharma Strategy Series’ 11th Annual “Portfolio Management: Aligning Portfolio and Productivity with Corporate Strategy to Drive Innovation” attracts over 100 senior R&D executives from the pharma, biotech, device, IT, public and governmental communities who share best practices in project and portfolio management, R&D innovation, decision analysis, forecasting and the improvement of operational models. Effective portfolio management requires the alignment of portfolio and productivity with corporate strategy, supporting agile development and adaptation of data into planning. 2016-11-03 09:00:00 UTC 2016-11-04 00:00:00 UTC Philadelphia, Panama Philadelphia Panama Data management [] [] [] workshops_and_courses [] []
  • Using the Human Protein Atlas – Tips and Tricks

    3 December 2016

    San Francisco, United States of America

    Using the Human Protein Atlas – Tips and Tricks https://tess.elixir-europe.org/events/using-the-human-protein-atlas-tips-and-tricks Organizer: Tove Alm, KTH Royal Institute of Technology This practical workshop will give you knowledge on why and how to use the Human Protein Atlas database (www.proteinatlas.org). The Human Protein Atlas portal is a publicly available database with millions of high-resolution images showing the spatial distribution of proteins in normal human tissues, cancer tissues, and different human cell lines. Antibody-based methods have been used together with transcriptomic analysis to explore the human proteome. The data are publicly available and include application-specific validations for each antibody. During the workshop different areas of the Protein Atlas will be explored, with a focus on the new Cell Atlas launching Dec. 4, 2016. Practical questions will be handed out that are solved by hands-on use of the Human Protein Atlas. Presentations: 1:30-1:35 pm – Welcome. Tove Alm, KTH Royal Institute of Technology 1:35-1:55 pm – Introduction to the Human Protein Atlas. Mathias Uhlén, KTH Royal Institute of Technology 1:55-2:15 pm – Spatial localization of proteins in the Tissue Atlas. Cecilia Lindskog, Uppsala University 2:15-2:35 pm – All about the Pathology Atlas. Fredrik Pontén, Uppsala University 2:35-2:45 pm – Break 2:45-3:05 pm – High-resolution: The Cell Atlas. Emma Lundberg, KTH Royal Institute of Technology 3:05-3:25 pm – Antibody validation for bioimaging. Lars Björk, KTH Royal Institute of Technology 3:25-3:45 pm – Working with the downloadable Human Protein Atlas data. Kalle von Feilitzen, KTH Royal Institute of Technology 3:45-3:55 pm – Concluding remarks and future prespective. Mathias Uhlén, KTH Royal Institute of Technology 3:55-4:10 pm – Break 4:10-5:30 pm – Practical session with General Questions and Answers 2016-12-03 13:30:00 UTC 2016-12-03 17:30:00 UTC ASCB 2016 Moscone Center, San Francisco, United States of America Moscone Center San Francisco San Francisco County United States of America Protein databases Protein expression [] Tove Alm, KTH Royal Institute of Technology tove.alm@scilifelab.se [] Life Science Researchers meetings_and_conferencesworkshops_and_courses [] protein family databasesImaging
  • Supporting FAIR Exchange of Chemical Data through Standards Development

    16 - 18 July 2018

    Amsterdam, Netherlands

    Supporting FAIR Exchange of Chemical Data through Standards Development https://tess.elixir-europe.org/events/supporting-fair-exchange-of-chemical-data-through-standards-development The GO FAIR initiative is intended to encourage and enable accurate and reproducible data exchange among and across disciplines. FAIR encapsulates the concepts that data should be Findable, Accessible, Interoperable and Reusable. This workshop will explore how these goals can be accomplished in the context of chemical data, addressing some of the issues present within chemistry, but also in the context of broader interaction with other disciplines. The topics have been chosen to begin a process of standards development and maintenance, tool development and maintenance, and addressing use cases from other domains. Key opportunities include interoperability criteria for spectra using IUPAC standards, prioritizing activities within the GO FAIR ecosystem, creating draft roadmaps with key milestones, and recruiting key leaders for ongoing activity. 2018-07-16 09:00:00 UTC 2018-07-18 17:00:00 UTC GO FAIR Science Park, Science Park, Amsterdam, Netherlands Science Park, Science Park Amsterdam Amsterdam Netherlands Data management [] International Union of Pure and Applied Chemistry (IUPAC) Committee on Publications and Cheminformatics Data Standards (CPCDS) CPCDS Subcommittee on Cheminformatics Data Standards (SCDS) CODATA the Committee on Data of the International Council for Science [] workshops_and_courses [] FAIR
  • Workshop on Research Objects (RO2018)

    29 October 2018

    Amsterdam, Netherlands

    Workshop on Research Objects (RO2018) https://tess.elixir-europe.org/events/workshop-on-research-objects-ro2018 In this workshop we will explore recent advancements in Research Objects and publishing of research data. **Deadlines**: * 2018-07-01 Abstracts due * 2018-07-15 Research articles and software/data articles due A travel bursary is available for accepted speakers, sponsored by [BioExcel](http://bioexcel.eu) (H2020-675728) ## Research Objects Scholarly Communication has evolved significantly in recent years, with an increasing focus on **Open Research**, [FAIR](https://doi.org/10.1038/sdata.2016.18)data sharing and community-developed open source methods. A question remains on how to publish, archive and explore digital research outputs. A number of initiatives have begun to explore how to package and describe research outputs, data, methods, workflows, provenance and structured metadata, reusing existing Web standards and formats. Such efforts aim to address the challenges of structuring multi-part research outcomes with their context, handling distributed and living content and porting and safely exchange what we collectively can call **Research Objects** between platforms and between researchers. In the workshop **RO2018**, part of [IEEE eScience 2018](https://www.escience2018.com) in Amsterdam, we will explore recent advancements in Research Objects and publishing of research data with peer-reviewed presentations, invited talks, short demos, lightning talks and break-out sessions to further build relationships across scientific domains and RO practitioners. ## Call for Papers RO2018 welcomes submissions of academic abstracts (1-2 pages), data/software articles (3-6 pages) and short research articles (4-8 pages) on cross-cutting case studies or specific research on topics including, but not limited to: FAIR metrics; platforms, infrastructure and tools; lifecycles; access control and secure exchange; examples of exploitation and application; executable containers; metadata, packaging and formats; credit, attribution and peer review; dealing with scale and distribution; driving adoption within current scholarly communications and alignments with community efforts; and domain-specific and cross-domain Research Objects. Further details on submitting: [http://www.researchobject.org/ro2018/submitting-to-ro2018/](http://www.researchobject.org/ro2018/submitting-to-ro2018/) ## Timeline 2018-07-01 Abstracts due 2018-07-15 Research articles and software/data articles due 2018-08-31 Notification of acceptance 2018-08-31 IEEE eScience 2018 early-bird registration deadline 2018-10-29 RO2018 workshop at IEEE eScience 2018 2018-10-29 09:00:00 UTC 2018-10-29 17:00:00 UTC The University of Manchester, researchobject.org, IEEE Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade, Amsterdam, Netherlands Mövenpick Hotel Amsterdam City Centre, 11, Piet Heinkade Amsterdam Amsterdam Netherlands Workflows Software engineering Ontology and terminology Informatics Data submission, annotation and curation Data identity and mapping Data integration and warehousing Data architecture, analysis and design Data management Computer science [] For any questions, email the Workshop Organizers at ro2018@easychair.org BioExcel [] workshops_and_courses [] digital archivesdata repositorylinked dataWorkflows

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