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  • Introduction to Python for Biologists

    2 - 6 March 2020

    Liverpool, United Kingdom

    Introduction to Python for Biologists https://tess.elixir-europe.org/events/introduction-to-python-for-biologists-789ef24a-854b-40c2-86b6-398ac0ef9cbd 2020-03-02 09:00:00 UTC 2020-03-06 17:00:00 UTC Matthew Gemmell University of Liverpool, Life Science Building, Crown Street, Liverpool, United Kingdom University of Liverpool, Life Science Building, Crown Street Liverpool Merseyside United Kingdom L69 7ZB University of Liverpool [] BeginnersBiologists 25 [] first_come_first_served Python for Biologists
  • SYSBIO 2020 – Advanced Lecture Course on Systems Biology

    7 - 13 March 2020

    Hotel Grauer Bär, Austria

    Elixir node event
    SYSBIO 2020 – Advanced Lecture Course on Systems Biology https://tess.elixir-europe.org/events/sysbio-2020-advanced-lecture-course-on-systems-biology Systems Biology is one of the most prominent newly emerging interdisciplinary science areas. By connecting fields such as genomics, proteomics, cell biology, medicine, molecular biology, biochemistry and genetics, with mathematics, bioinformatics, engineering and computation, it enables discovery of yet unknown… The post SYSBIO 2020 – Advanced Lecture Course on Systems Biology appeared first on Dutch Techcentre for Life Sciences. 2020-03-07 09:00:00 UTC 2020-03-13 00:00:00 UTC Hotel Grauer Bär, Innsbruck, Austria, Hotel Grauer Bär, Austria Hotel Grauer Bär, Innsbruck, Austria Hotel Grauer Bär Austria [] [] [] workshops_and_courses [] []
  • CABANA Workshop: Analysis of Crop Genomics Data

    16 - 20 March 2020

    Bogota, Colombia

    Elixir node event
    CABANA Workshop: Analysis of Crop Genomics Data https://tess.elixir-europe.org/events/cabana-workshop-analysis-of-crop-genomics-data-0d1c7271-613b-4672-bac5-19f641f9be70 This course will introduce crop biologists to methods and approaches for analysing crop genomics data. 2020-03-16 08:30:00 UTC 2020-03-20 12:30:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Marco Cristancho [] [] [] [] HDRUK
  • Introduction to Regular Expressions

    18 March 2020

    Heidelberg, Germany

    Introduction to Regular Expressions https://tess.elixir-europe.org/events/introduction-to-regular-expressions Educators: Supriya Khedkar, Toby Hodges (HD-HuB) Date: 18/03/2020 09:30 - 16:00 Location: EMBL Heidelberg; Room 202 Contents: Do you often work with lots of data files on the computer, are you often trying to spot particular files or lines of text in them that are important for you? If so, then using regular expressions could save you a lot of time and frustration! Regular expressions (regex/REs) are a language designed to describe patterns of characters that you want to match in a body of text. For example, if you want to extract every Ensembl Gene ID in a GFF file, find tandem repeats in a large set of sequences, or extract every email address in a large document, regular expressions are the perfect tool. Regular expressions are incorporated into a wide range of software and programming languages, and the workshop will include examples of their use on the UNIX command line and in R and Python. Learning goals: This workshop will provide an introduction to REs and cover some of the simple but powerful ways that these can be used to find patterns in large volumes of text data. The workshop will be interactive and driven by examples to demonstrate how you might use regular expressions in your work. Prerequisites: Participants are required to bring their own laptop to the workshop, with a text editor suitable for programming (e.g. Atom, Sublime Text, VSCode, Notepad++) installed. Keywords: UNIX command line, R, Python Tools: UNIX command line, R, Python 2020-03-18 09:00:00 UTC 2020-03-18 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • R for data science

    31 March - 3 April 2020

    Liverpool, United Kingdom

    R for data science https://tess.elixir-europe.org/events/r-for-data-science The course covered content for these learning objectives: To write your own custom functions To use for loops, apply functions and if statements To analyse large matrices of data in a semi-automated way To normalise data To quantify and correct batch effect To undertake the most common clustering algorithms including k-means and hierarchical To perform variable selection and present these results in different plots including heatmaps To do 2-way ANOVA To undertake multivariate modelling A brief introduction to machine learning. The course included brief theoretical introductions followed by hands on exercises based on real life research examples. 2020-03-31 09:00:00 UTC 2020-04-03 17:00:00 UTC Computational Biology Facility University of Liverpool, Liverpool, United Kingdom University of Liverpool Liverpool Merseyside United Kingdom L69 3GH Statistics and probability Bioinformatics University of Liverpool Computational Biology Facility (cbf@liverpool.ac.uk) [] [] 20 workshops_and_courses registration_of_interest R ProgrammingStatistical-model Statistics Pre-processingTranscriptomicsMetabolomicsProteomics
  • R for beginners

    1 - 3 April 2020

    Liverpool, United Kingdom

    R for beginners https://tess.elixir-europe.org/events/r-for-beginners R is a programming language and free software environment for statistical computing and graphics supported by the R Foundation for Statistical Computing. This course covers: Day 1: Foundations of R: get familiar with R, R studio, operators, variables, functions, directories and the script editor Day 2: Visualisation in basic R (boxplots, scatterplots, line graphs and histograms) and ggplot2 (same types of plots and also manipulation of data for use within this package as well as simple linear regression) Day 3: Introduction to statistical analyses in R: univariate statistics (choosing the right test, checking data assumptions, calculating and extracting the values to report in publications) and Principal Component Analysis (calculation and visualisation with ggplot2) Extra materials: Introduction to the Tidyverse, Introduction to for loops All materials have been built using relevant life sciences/clinical examples. The course has been designed to introduce R from the very basics. Therefore applicants do not need any prior experience to attend, just the desire to learn R. Real life examples with bioinformatic applications are included. 2020-04-01 09:00:00 UTC 2020-04-03 17:00:00 UTC Computational Biology Facility University of Liverpool, Liverpool, United Kingdom University of Liverpool Liverpool Merseyside United Kingdom L69 3GH Computational biology Statistics and probability University of Liverpool Computational Biology Facility (cbf@liverpool.ac.uk) [] [] workshops_and_courses first_come_first_served R-programmingbiostatistics Statistics R programminglife sciences, bioinformaticsClinical Bioinformatics
  • Metagenomics Workshop

    15 - 17 April 2020

    Liverpool

    Metagenomics Workshop https://tess.elixir-europe.org/events/metagenomics-workshop 2020-04-15 09:00:00 UTC 2020-04-17 16:00:00 UTC Matthew Gemmell Sherrington Building, Ashton Street, University of Liverpool, Liverpool Sherrington Building, Ashton Street, University of Liverpool Liverpool United Kingdom L69 3GE [] [] [] 50 workshops_and_courses [] Metagenomics
  • Ensembl Browser Workshop, DKFZ, 5 May 2020

    5 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ, 5 May 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-5-may-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-05 09:00:00 UTC 2020-05-05 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, DKFZ, 6 May 2020

    6 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl REST API Workshop, DKFZ, 6 May 2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-dkfz-6-may-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-05-06 09:00:00 UTC 2020-05-06 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
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