Register event
  • ELIXIR Train the Trainer (ONLINE)

    30 - 31 March 2020

    Cambridge, United Kingdom

    Elixir node event
    ELIXIR Train the Trainer (ONLINE) https://tess.elixir-europe.org/events/elixir-train-the-trainer-f54326b0-a8c1-4661-aa07-341344b0ff55 This course aims to provide trainers with guidance and tips for developing and delivering training in bioinformatics, exploring a range of methods appropriate to different learning styles and examining the requirements for a successful course (both scientific and logistic). This event is organized as part of the Horizon 2020 ELIXIR-EXCELERATE project. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3357293&course-title=Train%20the%20trainer).'' 2020-03-30 08:30:00 UTC 2020-03-31 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to Metabolomics Analysis

    30 March - 2 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Metabolomics Analysis https://tess.elixir-europe.org/events/introduction-to-metabolomics-analysis-95208499-863e-42de-9e3b-fc08328d6583 This course will provide an introduction to metabolomics data analysis. 2020-03-30 09:00:00 UTC 2020-04-02 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • CABANA Workshop: Managing a Bioinformatics Core Facility

    31 March - 2 April 2020

    Petropolis, Brazil

    Elixir node event
    CABANA Workshop: Managing a Bioinformatics Core Facility https://tess.elixir-europe.org/events/cabana-workshop-managing-a-bioinformatics-core-facility This knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI’s service teams, from each other, and from potential users of their services. 2020-03-31 08:00:00 UTC 2020-04-02 17:30:00 UTC Fiocruz - Palácio Itaboraí, Petropolis, Brazil Fiocruz - Palácio Itaboraí Petropolis Brazil 25655-031 [] Derrin Crawte [] [] [] [] HDRUK
  • Molecular Phylogenetics (FUTURE ONLINE LIVE TRAINING)

    1 - 3 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Molecular Phylogenetics (FUTURE ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/molecular-phylogenetics-67b36582-1fd4-412e-bf20-fa3584ab1e2f PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. This course will provide training for bench-based biologists to use molecular data to construct and interpret phylogenies, and test their hypotheses. Delegates will gain hands-on practice of using a variety of programs freely-available online and commonly used in molecular studies, interspersed with some lectures. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3350639&course-title=Molecular%20Phylogenetics).'' 2020-04-01 08:00:00 UTC 2020-04-03 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Phylogenetics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Single-cell Transcriptomics - postponed

    1 - 3 April 2020

    Lausanne, Switzerland

    Elixir node event
    Single-cell Transcriptomics - postponed https://tess.elixir-europe.org/events/single-cell-transcriptomics Due to COVID-19, this course has been postponed. Registered participants will receive specific information directly from the respective course’s organizers. 2020-04-01 09:00:00 UTC 2020-04-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Tools for regulatory genomics: using ISMARA, CRUNCH, EPD, and ChIP-seq tools to infer regulatory interactions from transcriptomic and epigenomic data.

    7 - 8 April 2020

    Lausanne, Switzerland

    Elixir node event
    Tools for regulatory genomics: using ISMARA, CRUNCH, EPD, and ChIP-seq tools to infer regulatory interactions from transcriptomic and epigenomic data. https://tess.elixir-europe.org/events/tools-for-regulatory-genomics-using-ismara-crunch-epd-and-chip-seq-tools-to-infer-regulatory-interactions-from-transcriptomic-and-epigenomic-data SIB has taken the decision to postpone or stream its courses to help slowing down the transmission of the COVID-19. Each course has its own nature, content, delivering mode, learning objectives and complexity. 2020-04-07 09:00:00 UTC 2020-04-08 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Using the Ensembl Genome Browser (POSTPONED - FUTURE DATE TO BE ADVISED)

    16 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser (POSTPONED - FUTURE DATE TO BE ADVISED) https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-467135ab-7028-4d4f-8a24-bbffa5548b3b PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. Where courses cannot be offered online, we will advise new classroom dates as soon as we are able. The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3351117&course-title=Using%20the%20Ensembl%20Genome%20Browser).'' 2020-04-16 08:30:00 UTC 2020-04-16 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Gene transcripts Gene structure Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Data Science in Python (Pencilled in for ONLINE LIVE TRAINING)

    16 - 17 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Data Science in Python (Pencilled in for ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/data-science-in-python-6ffd964b-42a0-40ea-9b1e-057efa56aea6 PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. This course covers concepts and strategies for working more effectively with Python with the aim of writing reusable code, using function and libraries. Participants will acquire a working knowledge of key concepts which are prerequisites for advanced programming in Python e.g. writing modules and classes. Note: this course is the continuation of the [Introduction to Solving Biological Problems with Python](http://training.csx.cam.ac.uk/bioinformatics/course/bioinfo-python/); participants are expected to have attended the introductory Python course and/or have acquired some working knowledge of Python. This course is also open to Python beginners who are already fluent in other programming languages as this will help them to quickly get started in Python. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3166613&course-title=Data%20Science%20in%20Python).'' 2020-04-16 08:30:00 UTC 2020-04-17 15:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Ensembl REST API workshop (POSTPONED - FUTURE DATE TO BE ADVISED)

    17 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Ensembl REST API workshop (POSTPONED - FUTURE DATE TO BE ADVISED) https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-c3f269e2-c30f-4a2d-b719-a822af0359c5 PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. Where courses cannot be offered online, we will advise new classroom dates as soon as we are able. The [Ensembl project](http://www.ensembl.org/) provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website. The workshop covers how to use the Ensembl [REST APIs](http://rest.ensembl.org/), including understanding the major endpoints and how to write scripts to call them. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3351102&course-title=Ensembl%20REST%20API%20Workshop).'' 2020-04-17 08:30:00 UTC 2020-04-17 14:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Bioinformaticians and wet-lab biologists who can programGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to R for Biologists (ONLINE LIVE TRAINING)

    20 - 21 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to R for Biologists (ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/introduction-to-r-for-biologists-787ea3ae-ab3d-43f5-8957-cd2c4577cf5a PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. R is one of the leading programming languages in Data Science. It is widely used to perform statistics, machine learning, visualisations and data analyses. It is an open source programming language so all the software we will use in the course is free. This course is an introduction to R designed for participants with no programming experience. We will start from scratch by introducing how to start programming in R and progress our way and learn how to read and write to files, manipulate data and visualise it by creating different plots - all the fundamental tasks you need to get you started analysing your data. During the course we will be working with one of the most popular packages in R; tidyverse that will allow you to manipulate your data effectively and visualise it to a publication level standard. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3338924&course-title=Introduction%20to%20R%20for%20Biologists).'' 2020-04-20 08:30:00 UTC 2020-04-21 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • RNA-Sequence Analysis

    20 - 24 April 2020

    Cambridge, United Kingdom

    Elixir node event
    RNA-Sequence Analysis https://tess.elixir-europe.org/events/rna-sequence-analysis-3d0c99e5-ef69-464f-a2ac-66c0ccfaff93 This course will familiarise participants with advanced data analysis methodologies in the field of transcriptomics and to provide practical training in the latest analytical approaches. 2020-04-20 09:00:00 UTC 2020-04-24 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • 2nd European Network Biology Conference: From Networks to Modeling

    20 - 22 April 2020

    Cambridge, United Kingdom

    Elixir node event
    2nd European Network Biology Conference: From Networks to Modeling https://tess.elixir-europe.org/events/2nd-european-network-biology-conference-from-networks-to-modeling The conference will examine novel computational and experimental approaches for generating functional understanding from network modelling and review current trends in network mapping and analysis. 2020-04-20 12:00:00 UTC 2020-04-22 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • 2nd European Network Biology Conference: From Networks to Modelling

    20 - 22 April 2020

    Cambridge, United Kingdom

    Elixir node event
    2nd European Network Biology Conference: From Networks to Modelling https://tess.elixir-europe.org/events/2nd-european-network-biology-conference-from-networks-to-modelling The conference will examine novel computational and experimental approaches for generating functional understanding from network modelling and review current trends in network mapping and analysis. 2020-04-20 12:00:00 UTC 2020-04-22 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Extracting biological information from gene lists (POSTPONED - FUTURE DATE TO BE ADVISED)

    22 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Extracting biological information from gene lists (POSTPONED - FUTURE DATE TO BE ADVISED) https://tess.elixir-europe.org/events/extracting-biological-information-from-gene-lists-06e84be3-c3c2-40da-b84a-1465e1a5571a PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. Where courses cannot be offered online, we will advise new classroom dates as soon as we are able. Many experimental designs end up producing lists of hits, usually based around genes or transcripts. Sometimes these lists are small enough that they can be examined individually, but often it is useful to do a more structured functional analysis to try to automatically determine any interesting biological themes which turn up in the lists. This course looks at the various software packages, databases and statistical methods which may be of use in performing such an analysis. As well as being a practical guide to performing these types of analysis the course will also look at the types of artefacts and bias which can lead to false conclusions about functionality and will look at the appropriate ways to both run the analysis and present the results for publication. Course materials are available [here](https://www.bioinformatics.babraham.ac.uk/training.html#fagl). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3097799&course-title=Extracting%20biological%20information%20from%20gene%20lists).'' 2020-04-22 08:30:00 UTC 2020-04-22 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Biology Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to metagenomics

    23 - 24 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to metagenomics https://tess.elixir-europe.org/events/introduction-to-metagenomics PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. This two days course will focus on the theory and applications of metagenomics, for the analysis of complex microbiomes (microbial communities). The course will include theoretical (~40%) and practical (~60%) training. We will start with the fastest, simplest and cheapest amplicon based methods and will go up to the Hi-C metagenomics methods that give highly detailed results on the complex microbial communities. The practical component will cover bioinformatics analysis of metagenomics. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3331686&course-title=Introduction%20to%20metagenomics).'' 2020-04-23 08:30:00 UTC 2020-04-24 15:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data mining Data visualisation Metagenomics Bioinformatics University of Cambridge Bioinformatics Training [] The course is aimed at biologists interested in microbiologyprokaryotic genomicsanalysis of complex microbiomes and antimicrobial resistance.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Networks and Pathways

    23 - 24 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Networks and Pathways https://tess.elixir-europe.org/events/networks-and-pathways-33bc9682-193c-4c63-9c89-994c45083776 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-04-23 09:00:00 UTC 2020-04-24 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Advanced Network Analysis and Visualisation in Cytoscape

    23 - 24 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Advanced Network Analysis and Visualisation in Cytoscape https://tess.elixir-europe.org/events/advanced-network-analysis-and-visualisation-in-cytoscape This course will focus on advanced network analysis and visualisation functionalities of Cytoscape. The course will feature tutorials on advanced network data visualisation, integration of single cell data into network analysis, and computational access to Cytoscape functionalities. EMBL-EBI resources directly related to interaction and pathway information will also be highlighted. 2020-04-23 09:00:00 UTC 2020-04-24 14:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Rebecca Nicholl [] [] [] [] HDRUK
  • Analysis of bulk RNA-seq data (Pencilled in for ONLINE LIVE TRAINING)

    27 - 29 April 2020

    Cambridge, United Kingdom

    Elixir node event
    Analysis of bulk RNA-seq data (Pencilled in for ONLINE LIVE TRAINING) https://tess.elixir-europe.org/events/analysis-of-bulk-rna-seq-data-66d0a6e6-6641-406b-9df9-53937e6a1c5c PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. The aim of this course is to familiarize the participants with the primary analysis of RNA-seq data. This course starts with a brief introduction to RNA-seq and discusses quality control issues. Next, we will present the alignment step, quantification of expression and differential expression analysis. For downstream analysis we will focus on tools available through the Bioconductor project for manipulating and analysing bulk RNA-seq. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3246123&course-title=Analysis%20of%20bulk%20RNA-seq%20data).'' 2020-04-27 08:30:00 UTC 2020-04-29 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq Data mining Transcriptomics Data visualisation Functional genomics Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Gene expression made useful easily: tools and database of Bgee

    27 April 2020

    Lausanne, Switzerland

    Elixir node event
    Gene expression made useful easily: tools and database of Bgee https://tess.elixir-europe.org/events/gene-expression-made-useful-easily-tools-and-database-of-bgee SIB has taken the decision to postpone or stream its courses to help slowing down the transmission of the COVID-19. Each course has its own nature, content, delivering mode, learning objectives and complexity. 2020-04-27 09:00:00 UTC 2020-04-27 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Intermediate stats: data analysis in practice - postponed

    29 - 30 April 2020

    Lausanne, Switzerland

    Elixir node event
    Intermediate stats: data analysis in practice - postponed https://tess.elixir-europe.org/events/intermediate-stats-data-analysis-in-practice-748030b1-feea-4f71-abb1-5c5eae32b85a This course is postponed, more information will be sent to the registered participants. 2020-04-29 09:00:00 UTC 2020-04-30 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Ensembl Browser Workshop, DKFZ, 5 May 2020

    5 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ, 5 May 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-5-may-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-05 09:00:00 UTC 2020-05-05 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, DKFZ, 6 May 2020

    6 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl REST API Workshop, DKFZ, 6 May 2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-dkfz-6-may-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-05-06 09:00:00 UTC 2020-05-06 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Introduction to openBIS

    6 May 2020

    Lausanne, Switzerland

    Elixir node event
    Introduction to openBIS https://tess.elixir-europe.org/events/introduction-to-openbis-9ae2a417-c9f0-4dde-95c2-2e02a439c4c0 SIB has taken the decision to postpone or stream its courses to help slowing down the transmission of the COVID-19. Each course has its own nature, content, delivering mode, learning objectives and complexity. 2020-05-06 09:00:00 UTC 2020-05-06 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Managing Single-Cell Transcriptomics Data

    11 - 15 May 2020

    Cambridge, United Kingdom

    Elixir node event
    Managing Single-Cell Transcriptomics Data https://tess.elixir-europe.org/events/managing-single-cell-transcriptomics-data-777fd37c-2de8-4ebf-99d8-49597d50c9a8 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-05-11 09:00:00 UTC 2020-05-15 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Starting Single Cell RNA-Seq Analysis

    11 - 15 May 2020

    Cambridge, United Kingdom

    Elixir node event
    Starting Single Cell RNA-Seq Analysis https://tess.elixir-europe.org/events/starting-single-cell-rna-seq-analysis This course trains participants to analyse single cell RNA-seq data utilising Galaxy pipelines, an online open-access resource for the computer-phobic. 2020-05-11 10:15:00 UTC 2020-05-15 13:30:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Reproducible Research with R

    18 May 2020

    Cambridge, United Kingdom

    Elixir node event
    Reproducible Research with R https://tess.elixir-europe.org/events/reproducible-research-with-r-305a5426-1147-498c-b766-f1cc965a6732 PLEASE NOTE that until further notice, due to the evolving situation with Coronavirus no courses will be offered as classroom based at the Training Facility. The Bioinformatics Team are investigating a workable solution to offer some of the courses on a remote basis and will be in contact with updates as soon as possible. This course introduces concepts about reproducibility that can be used when you are programming in R. We will explore how to create notebooks - a way to integrate your R analyses into reports using Rmarkdown. The course also introduces the concept of version control. We will learn how to create a repository on GitHub and how to work together on the same project collaboratively without creating conflicting versions of files. The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3356804&course-title=Reproducible%20Research%20with%20R).'' 2020-05-18 08:30:00 UTC 2020-05-18 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • CABANA: Understanding Biodiversity Through Bioinformatics Based Approaches

    18 - 22 May 2020

    Cambridge, United Kingdom

    Elixir node event
    CABANA: Understanding Biodiversity Through Bioinformatics Based Approaches https://tess.elixir-europe.org/events/cabana-understanding-biodiversity-through-bioinformatics-based-approaches This course covers aspects of biodiversity and how bioinformatics plays a role in our understanding of the natural world. 2020-05-18 09:00:00 UTC 2020-05-22 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Marina Pujol [] [] [] [] HDRUK
  • Ensembl browser course

    21 May 2020

    Cambridge, United Kingdom

    Elixir node event
    Ensembl browser course https://tess.elixir-europe.org/events/ensembl-browser-course Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-21 09:30:00 UTC 2020-05-21 17:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Michal Szpak [] [] [] [] HDRUK
  • Protein Function Prediction with Machine Learning and Interactive Analytics

    3 - 4 June 2020

    Cambridge, United Kingdom

    Elixir node event
    Protein Function Prediction with Machine Learning and Interactive Analytics https://tess.elixir-europe.org/events/protein-function-prediction-with-machine-learning-and-interactive-analytics-cfca40cd-e960-416b-a96a-6a04d7e52bba This workshop explores how to conduct functional annotation of proteins through machine learning (ML) approaches. 2020-06-03 09:00:00 UTC 2020-06-04 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • ELIXIR All Hands 2020

    8 - 11 June 2020

    Amsterdam, Netherlands

    ELIXIR All Hands 2020 https://tess.elixir-europe.org/events/elixir-all-hands-2020 The ELIXIR All Hands 2020 will be held in the Eye Filmmuseum, Amsterdam. Timeline 21 October - 15 November 2019 Call for workshops and Call for presentations. December 2019 Selection of presentations and workshops. 7 February 2020 Accepted presentations (incl. talks, demonstrations and posters) announced by this date. 24 February 2020 Registration opens for 300 delegates on a first come, first served basis. 1 March 2020 Registration closed, reserve list available. Deadline for poster submissions, or earlier, if capacity is reached. Submission of posters is re-opened. Priority will be given to those participants that have not previously submitted a poster. 31 March 2020 Deadline for poster submissions, or earlier, if capacity is reached. Submission of posters is re-opened. Priority will be given to those participants that have not previously submitted a poster and those already registered. Accommodation For 2020 All Hands meeting, ELIXIR will not have a block reservation for accommodation, but each participant will need to book their own accommodation. The venue is located in central Amsterdam with plenty of options, but keep in mind that June is a busy month in the city and therefore it is recommended to reserve accommodation early. Walking distance hotels from venue Eye Film Museum: Sir Adam Hotel Park Plaza Victoria Ibis Styles Hotel Ibis Amsterdam Central Station Multatuli Hotel Registration The registration to the All Hands meeting is now closed until all speakers have been registered. You can add yourself to the reserve list if you log in to the site and return to this page. You will see the registration link at the top of the page once you are logged in. More spaces may become available later on and will be allocated to people on the reserve list on a first come, first served basis. Code of Conduct The ELIXIR Code of Conduct has been created to ensure that people at ELIXIR events can interact with each other in a respectful and safe environment. It provides ways you can voice your concern if you believe there has been a breach to this Code of Conduct. The ELIXIR Code of Conduct will be in place at this event. Social activities This Google doc lists recommended tourist sites, social activities and things to do in your free time. Note: The All Hands meeting ends on Thursday 11 Jun 2020 at 11:00 CEST. After the end of the meeting, there are two project meetings taking place starting at 11:00 CEST. These are the CONVERGE AGM and the Federated Human Data Strategic Implementation Study meeting. Both of these meetings are restricted to named project partners. 2020-06-08 12:00:00 UTC 2020-06-11 11:00:00 UTC Eye Filmmuseum, Amsterdam, Netherlands Eye Filmmuseum Amsterdam Netherlands 1031 KT [] [] [] meetings_and_conferences [] []

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