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  • Introduction to Regular Expressions

    18 March 2020

    Heidelberg, Germany

    Introduction to Regular Expressions https://tess.elixir-europe.org/events/introduction-to-regular-expressions Educators: Supriya Khedkar, Toby Hodges (HD-HuB) Date: 18/03/2020 09:30 - 16:00 Location: EMBL Heidelberg; Room 202 Contents: Do you often work with lots of data files on the computer, are you often trying to spot particular files or lines of text in them that are important for you? If so, then using regular expressions could save you a lot of time and frustration! Regular expressions (regex/REs) are a language designed to describe patterns of characters that you want to match in a body of text. For example, if you want to extract every Ensembl Gene ID in a GFF file, find tandem repeats in a large set of sequences, or extract every email address in a large document, regular expressions are the perfect tool. Regular expressions are incorporated into a wide range of software and programming languages, and the workshop will include examples of their use on the UNIX command line and in R and Python. Learning goals: This workshop will provide an introduction to REs and cover some of the simple but powerful ways that these can be used to find patterns in large volumes of text data. The workshop will be interactive and driven by examples to demonstrate how you might use regular expressions in your work. Prerequisites: Participants are required to bring their own laptop to the workshop, with a text editor suitable for programming (e.g. Atom, Sublime Text, VSCode, Notepad++) installed. Keywords: UNIX command line, R, Python Tools: UNIX command line, R, Python 2020-03-18 09:00:00 UTC 2020-03-18 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • Best practices in High-Perfomance Computing (sciCORE cluster)

    18 March 2020

    Basel, Switzerland

    Elixir node event
    Best practices in High-Perfomance Computing (sciCORE cluster) https://tess.elixir-europe.org/events/best-practices-in-high-perfomance-computing-scicore-cluster Overview This one-day course is a follow-up to the sciCORE course "Introduction to HPC (sciCORE cluster)". 2020-03-18 09:00:00 UTC 2020-03-18 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First steps with R in Life Sciences

    16 - 17 April 2020

    Basel, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-52ebf63a-a4fb-4898-8b44-212e3eced3c5 --> Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2020-04-16 09:00:00 UTC 2020-04-17 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    18 - 20 May 2020

    Basel, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-d45a8059-cedd-4e69-bcac-8da973f4496d Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2020-05-18 09:00:00 UTC 2020-05-20 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    18 - 20 May 2020

    Basel, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-402cdbc1-5a65-4f48-8581-994a44441dc5 Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2020-05-18 09:00:00 UTC 2020-05-20 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Advanced topics in single-cell transcriptomics

    27 - 29 May 2020

    Basel, Switzerland

    Elixir node event
    Advanced topics in single-cell transcriptomics https://tess.elixir-europe.org/events/advanced-topics-in-single-cell-transcriptomics More information soon 2020-05-27 09:00:00 UTC 2020-05-29 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Introduction to high-performance computing (sciCORE cluster)

    3 June 2020

    Basel, Switzerland

    Elixir node event
    Introduction to high-performance computing (sciCORE cluster) https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-scicore-cluster-17743d87-92b4-473f-9591-384d43fe776d Overview This full-day course has a practical focus, where participants will learn how to use the Linux command line and interact with the sciCORE cluster. All new users of sciCORE are strongly encouraged to follow this course. 2020-06-03 09:00:00 UTC 2020-06-03 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First steps in Python, and more!

    9 - 11 June 2020

    Basel, Switzerland

    Elixir node event
    First steps in Python, and more! https://tess.elixir-europe.org/events/first-steps-in-python-and-more Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2020-06-09 09:00:00 UTC 2020-06-11 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Protein Bioinformatics: Sequence-Structure-Function - Dates to be confirmed

    18 - 20 November 2020

    Basel, Switzerland

    Elixir node event
    Protein Bioinformatics: Sequence-Structure-Function - Dates to be confirmed https://tess.elixir-europe.org/events/protein-bioinformatics-sequence-structure-function-dates-to-be-confirmed Overview Sequence-structure-function relationships of proteins are central to a comprehensive understanding of cellular biology. However, many proteins lack direct and detailed information regarding structure, function, and complex formation. 2020-11-18 09:00:00 UTC 2020-11-20 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
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