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  • Tools for regulatory genomics: using ISMARA, CRUNCH, EPD, and ChIP-seq tools to infer regulatory interactions from transcriptomic and epigenomic data.

    7 - 8 April 2020

    Lausanne, Switzerland

    Elixir node event
    Tools for regulatory genomics: using ISMARA, CRUNCH, EPD, and ChIP-seq tools to infer regulatory interactions from transcriptomic and epigenomic data. https://tess.elixir-europe.org/events/tools-for-regulatory-genomics-using-ismara-crunch-epd-and-chip-seq-tools-to-infer-regulatory-interactions-from-transcriptomic-and-epigenomic-data SIB has taken the decision to postpone or stream its courses to help slowing down the transmission of the COVID-19. Each course has its own nature, content, delivering mode, learning objectives and complexity. 2020-04-07 09:00:00 UTC 2020-04-08 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Gene expression made useful easily: tools and database of Bgee - streamed

    27 April 2020

    Lausanne, Switzerland

    Elixir node event
    Gene expression made useful easily: tools and database of Bgee - streamed https://tess.elixir-europe.org/events/gene-expression-made-useful-easily-tools-and-database-of-bgee This course will be streamed for the registered participants. Course page updated on 1.04.2020. Overview This is a course on bioinformatics resources taught by the developers of the resources. 2020-04-27 09:00:00 UTC 2020-04-27 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Intermediate stats: data analysis in practice - postponed

    29 - 30 April 2020

    Lausanne, Switzerland

    Elixir node event
    Intermediate stats: data analysis in practice - postponed https://tess.elixir-europe.org/events/intermediate-stats-data-analysis-in-practice-748030b1-feea-4f71-abb1-5c5eae32b85a This course is postponed, more information will be sent to the registered participants. 2020-04-29 09:00:00 UTC 2020-04-30 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Ensembl Browser Workshop, DKFZ, 5 May 2020

    5 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ, 5 May 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-5-may-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-05 09:00:00 UTC 2020-05-05 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, DKFZ, 6 May 2020

    6 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl REST API Workshop, DKFZ, 6 May 2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-dkfz-6-may-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-05-06 09:00:00 UTC 2020-05-06 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Introduction to openBIS

    6 May 2020

    Lausanne, Switzerland

    Elixir node event
    Introduction to openBIS https://tess.elixir-europe.org/events/introduction-to-openbis-9ae2a417-c9f0-4dde-95c2-2e02a439c4c0 SIB has taken the decision to postpone or stream its courses to help slowing down the transmission of the COVID-19. Each course has its own nature, content, delivering mode, learning objectives and complexity. 2020-05-06 09:00:00 UTC 2020-05-06 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    18 - 20 May 2020

    Basel, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-d45a8059-cedd-4e69-bcac-8da973f4496d Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2020-05-18 09:00:00 UTC 2020-05-20 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences - streamed

    18 - 20 May 2020

    Basel, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences - streamed https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-402cdbc1-5a65-4f48-8581-994a44441dc5 This course will be streamed only for the registered participants. 2020-05-18 09:00:00 UTC 2020-05-20 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • ELIXIR All Hands 2020

    8 - 11 June 2020

    Amsterdam, Netherlands

    ELIXIR All Hands 2020 https://tess.elixir-europe.org/events/elixir-all-hands-2020 The ELIXIR All Hands 2020 will be held in the Eye Filmmuseum, Amsterdam. Timeline 21 October - 15 November 2019 Call for workshops and Call for presentations. December 2019 Selection of presentations and workshops. 7 February 2020 Accepted presentations (incl. talks, demonstrations and posters) announced by this date. 24 February 2020 Registration opens for 300 delegates on a first come, first served basis. 1 March 2020 Registration closed, reserve list available. Deadline for poster submissions, or earlier, if capacity is reached. Submission of posters is re-opened. Priority will be given to those participants that have not previously submitted a poster. 31 March 2020 Deadline for poster submissions, or earlier, if capacity is reached. Submission of posters is re-opened. Priority will be given to those participants that have not previously submitted a poster and those already registered. Accommodation For 2020 All Hands meeting, ELIXIR will not have a block reservation for accommodation, but each participant will need to book their own accommodation. The venue is located in central Amsterdam with plenty of options, but keep in mind that June is a busy month in the city and therefore it is recommended to reserve accommodation early. Walking distance hotels from venue Eye Film Museum: Sir Adam Hotel Park Plaza Victoria Ibis Styles Hotel Ibis Amsterdam Central Station Multatuli Hotel Registration The registration to the All Hands meeting is now closed until all speakers have been registered. You can add yourself to the reserve list if you log in to the site and return to this page. You will see the registration link at the top of the page once you are logged in. More spaces may become available later on and will be allocated to people on the reserve list on a first come, first served basis. Code of Conduct The ELIXIR Code of Conduct has been created to ensure that people at ELIXIR events can interact with each other in a respectful and safe environment. It provides ways you can voice your concern if you believe there has been a breach to this Code of Conduct. The ELIXIR Code of Conduct will be in place at this event. Social activities This Google doc lists recommended tourist sites, social activities and things to do in your free time. Note: The All Hands meeting ends on Thursday 11 Jun 2020 at 11:00 CEST. After the end of the meeting, there are two project meetings taking place starting at 11:00 CEST. These are the CONVERGE AGM and the Federated Human Data Strategic Implementation Study meeting. Both of these meetings are restricted to named project partners. 2020-06-08 12:00:00 UTC 2020-06-11 11:00:00 UTC Eye Filmmuseum, Amsterdam, Netherlands Eye Filmmuseum Amsterdam Netherlands 1031 KT [] [] [] meetings_and_conferences [] []
  • First steps in Python, and more!

    9 - 11 June 2020

    Basel, Switzerland

    Elixir node event
    First steps in Python, and more! https://tess.elixir-europe.org/events/first-steps-in-python-and-more Overview Python is an open-source and general-purpose scripting language which runs on all major operating systems. 2020-06-09 09:00:00 UTC 2020-06-11 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Computational genomics course for hands-on data analysis 2020

    15 - 17 June 2020

    Berlin, Germany

    Computational genomics course for hands-on data analysis 2020 https://tess.elixir-europe.org/events/computational-genomics-course-for-hands-on-data-analysis-2020 Educators: Altuna Alkalin, Verdan Franke, Bora Uyar (RBC/deNBI-epi Scientists from Berlin) Date: 15-17 June 2020 Location: BIMSB, Max-Delbrück Center for Molecular Medicine, Berlin. Mitte Campus. Contents: The general aim of the course is to equip participants with practical and technical knowledge to analyze single cell RNA-seq data. With this aim in mind, we will go through unsupervised machine learning methods to analyze high-dimensional data sets, and move on to statistical methods developed to analyze bulk RNA-seq. Lastly, we will introduce analysis techniques used for single cell RNA-seq. There will be theoretical lectures followed by practical sessions where students directly apply what they have learned. The programming will be mainly done in R. Day 1: Intro to machine learning & data visualization for genomics Day 2: Bulk RNA-seq analysis Day 3: Single cell RNA-seq analysis Learning goals: The course will be beneficial for first year computational biology PhD students, and experimental biologists and medical scientists who want to begin data analysis or are seeking a better understanding of computational genomics and analysis of popular sequencing methods.r Prerequisites: Some statistics and R programming experience will be good to keep up with the course. Practicals will be done in R. Keywords: Computational genomics, RNA-seq, Machine learing, Tools: R/Bioconductor Application Deadline: 15th of April 2020-06-15 09:00:00 UTC 2020-06-17 17:00:00 UTC de.NBI Berlin, Berlin, Germany Berlin Berlin Germany [] [] [] workshops_and_courses [] []
  • Galaxy introduction for life scientists - streamed or live

    17 June 2020

    Lausanne, Switzerland

    Galaxy introduction for life scientists - streamed or live https://tess.elixir-europe.org/events/galaxy-introduction-for-life-scientists Should this course be streamed, it will be only for registered participants. Overview Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. 2020-06-17 09:00:00 UTC 2020-06-17 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Perl in Life Sciences

    24 - 25 June 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with Perl in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-perl More information soon 2020-06-24 09:00:00 UTC 2020-06-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Perl in Life Sciences

    24 - 25 June 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with Perl in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-perl-in-life-sciences SIB has taken the decision to postpone or stream its courses to help slowing down the transmission of the COVID-19. Each course has its own nature, content, delivering mode, learning objectives and complexity. 2020-06-24 09:00:00 UTC 2020-06-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Advanced Statistics: Statistical Modeling

    17 - 20 August 2020

    Lausanne, Switzerland

    Elixir node event
    Advanced Statistics: Statistical Modeling https://tess.elixir-europe.org/events/advanced-statistics-statistical-modeling-6f35f6b7-7d91-47b8-8ae4-3c447f2dd0da Overview While the statistical models and tools presented in an introductory statistics course (such as linear regression) can be used to answer a wide range of questions in life sciences, many types of data can not be analyzed using these tools. 2020-08-17 09:00:00 UTC 2020-08-20 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    1 - 3 September 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences-date-to-be-confirmed More information on due time... 2020-09-01 09:00:00 UTC 2020-09-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Comparative Genomics

    16 - 18 September 2020

    Lausanne, Switzerland

    Elixir node event
    Comparative Genomics https://tess.elixir-europe.org/events/comparative-genomics-081ccefb-bceb-4008-b66a-ab370648018c Overview The aims of this course are to (i) explore key evolutionary concepts, (ii) examine different methodological approaches, and (iii) gain hands-on experience in eukaryotic comparative genomic analyses. 2020-09-16 09:00:00 UTC 2020-09-18 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with UNIX in Life Sciences

    23 September 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with UNIX in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-unix-in-life-sciences-a8e36e3f-7bff-40fb-bc07-755d310fe911 Overview With a constant evolution of technologies, life scientists (such as laboratory biologists) are faced with an increasing need for bioinformatics skills to deal with high-throughput data storage, retrieval and analysis. 2020-09-23 09:00:00 UTC 2020-09-23 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • UNIX scripting for Life Scientists

    1 - 2 October 2020

    Lausanne, Switzerland

    Elixir node event
    UNIX scripting for Life Scientists https://tess.elixir-europe.org/events/unix-scripting-for-life-scientists More information on due time... 2020-10-01 09:00:00 UTC 2020-10-02 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • UNIX scripting for Life Scientists

    1 - 2 October 2020

    Lausanne, Switzerland

    Elixir node event
    UNIX scripting for Life Scientists https://tess.elixir-europe.org/events/unix-scripting-for-life-scientists-ef67aec8-cc7b-4010-8668-fe9d5ba9091d More information on due time... 2020-10-01 09:00:00 UTC 2020-10-02 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First steps with R in Life Sciences

    27 - 28 October 2020

    Lausanne, Switzerland

    Elixir node event
    First steps with R in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-r-in-life-sciences-009cd52b-e152-423a-8888-02c096d98fc5 Overview R is a complete, flexible and open source system for statistical analysis and graphics, which has become a tool of choice for biologists and biomedical scientists who need to analyse and visualise large amounts of data. 2020-10-27 09:00:00 UTC 2020-10-28 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Ligand-protein docking, and computer-aided drug design

    3 - 5 November 2020

    Lausanne, Switzerland

    Elixir node event
    Ligand-protein docking, and computer-aided drug design https://tess.elixir-europe.org/events/ligand-protein-docking-and-computer-aided-drug-design-a6576d32-6b99-4155-a68c-d273db65592a Overview This workshop aims to present basics on molecular visualization, ligand-protein docking and several computer-aided drug design tools developed at SIB. Numerous case examples are taken from different therapeutic fields. 2020-11-03 09:00:00 UTC 2020-11-05 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Protein Bioinformatics: Sequence-Structure-Function - Dates to be confirmed

    18 - 20 November 2020

    Basel, Switzerland

    Elixir node event
    Protein Bioinformatics: Sequence-Structure-Function - Dates to be confirmed https://tess.elixir-europe.org/events/protein-bioinformatics-sequence-structure-function-dates-to-be-confirmed Overview Sequence-structure-function relationships of proteins are central to a comprehensive understanding of cellular biology. However, many proteins lack direct and detailed information regarding structure, function, and complex formation. 2020-11-18 09:00:00 UTC 2020-11-20 00:00:00 UTC SIB, Basel, Switzerland SIB Basel Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First Steps with Python in Life Sciences

    1 - 3 December 2020

    Lausanne, Switzerland

    Elixir node event
    First Steps with Python in Life Sciences https://tess.elixir-europe.org/events/first-steps-with-python-in-life-sciences More information on due time... 2020-12-01 09:00:00 UTC 2020-12-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []

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