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43 events found
Country: Turkey or United Kingdom
and
City: Bogota or Heidelberg or Gebze or Sheffield or Stockholm or Bern or Nijmegen or Antalya
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Introduction to Statistical Analysis
No date given
Sheffield, United Kingdom
Introduction to Statistical Analysis http://sbc.shef.ac.uk/training/stats-introduction-2018-06-21 https://tess.elixir-europe.org/events/introduction-to-statistical-analysis This course provides a refresher on the foundations of statistical analysis. Practicals are conducted using the ‘Shiny’ package; which provides an accessible interface to the R statistical language. Note that this is not a course for learning about the R statistical language itself. If you wish to learn more about R, please see other courses at the Sheffield Bioinformatics Core. Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to Unix for Bioinformatics
No date given
Sheffield, United Kingdom
Introduction to Unix for Bioinformatics http://sbc.shef.ac.uk/training/command-line-2018-05-21 https://tess.elixir-europe.org/events/introduction-to-unix-for-bioinformatics This course offers an introduction to working with Linux. We will describe the Linux environment so that participants can start to utilize command-line tools and feel comfortable using a text-based way of interacting with a computer. We will take a problem-solving approach, drawing on types of tasks commonly encountered by Linux users when processing text files Pam Liversidge Design Studio 2 - E06, Sheffield, United Kingdom Pam Liversidge Design Studio 2 - E06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
mRNA Reprogramming 101 Training Courses
18 - 20 October 2012
Sheffield, United Kingdom
mRNA Reprogramming 101 Training Courses http://www.cscb.shef.ac.uk/training/ https://tess.elixir-europe.org/events/mrna-reprogramming-101-training-courses 2012-10-18 00:00:00 UTC 2012-10-20 00:00:00 UTC The Centre for Stem Cell Biology Sheffield, United Kingdom Sheffield United Kingdom [] [] [] workshops_and_courses [] CellBiology -
mRNA Reprogramming 101
24 - 26 October 2012
Sheffield, United Kingdom
mRNA Reprogramming 101 http://www.cscb.shef.ac.uk/training/#__1 https://tess.elixir-europe.org/events/mrna-reprogramming-101 2012-10-24 00:00:00 UTC 2012-10-26 00:00:00 UTC The Centre for Stem Cell Biology Sheffield, United Kingdom Sheffield United Kingdom [] [] [] workshops_and_courses [] CellBiology -
BMSS and Sheffield Hallam University Imaging and MALDI SIG Meeting
10 April 2013
Sheffield, United Kingdom
BMSS and Sheffield Hallam University Imaging and MALDI SIG Meeting http://www.bmss.org.uk/meetings.shtml https://tess.elixir-europe.org/events/bmss-and-sheffield-hallam-university-imaging-and-maldi-sig-meeting 2013-04-10 00:00:00 UTC 2013-04-10 00:00:00 UTC BMSS Sheffield Hallam University, Sheffield, United Kingdom Sheffield Hallam University Sheffield United Kingdom Systems biology [] [] [] meetings_and_conferences [] [] -
75th Harden Conference - Receptor tyrosine kinase structure and function in mammalian health and disease
2 - 6 September 2013
Sheffield, United Kingdom
75th Harden Conference - Receptor tyrosine kinase structure and function in mammalian health and disease http://www.biochemistry.org/tabid/379/MeetingNo/75HDN/view/Conference/default.aspx https://tess.elixir-europe.org/events/75th-harden-conference-receptor-tyrosine-kinase-structure-and-function-in-mammalian-health-and-disease 2013-09-02 00:00:00 UTC 2013-09-06 00:00:00 UTC Biochemical Society Sheffield, United Kingdom Sheffield United Kingdom Physiology Medicine [] [] [] meetings_and_conferences [] [] -
2nd Anticancer Agents Congress: Targeting Cancer Stem Cell
21 - 24 November 2013
Antalya, Turkey
2nd Anticancer Agents Congress: Targeting Cancer Stem Cell http://www.cancerresearch2013.org/ https://tess.elixir-europe.org/events/2nd-anticancer-agents-congress-targeting-cancer-stem-cell 2013-11-21 00:00:00 UTC 2013-11-24 00:00:00 UTC ConPlus Antalya, Turkey Antalya Turkey Systems biology [] [] [] meetings_and_conferences [] cancer -
symposium of environmental proteomics
2 July 2014
Sheffield, United Kingdom
symposium of environmental proteomics http://www.shef.ac.uk/polopoly_fs/1.371155.1398945725!/file/envpro.pdf https://tess.elixir-europe.org/events/symposium-of-environmental-proteomics 2014-07-02 01:00:00 UTC 2014-07-02 01:00:00 UTC Sheffield, United Kingdom Sheffield United Kingdom Proteomics Metabolomics [] [] [] meetings_and_conferences [] [] -
MALDI and Beyond, Mass Spectrometry Imaging Symposium
9 July 2014
Sheffield, United Kingdom
MALDI and Beyond, Mass Spectrometry Imaging Symposium http://www.shu.ac.uk/research/bmrc/events/maldi-and-beyond-mass-spectrometry-imaging-symposium https://tess.elixir-europe.org/events/maldi-and-beyond-mass-spectrometry-imaging-symposium 2014-07-09 01:00:00 UTC 2014-07-09 01:00:00 UTC Sheffield Hallam University Sheffield, United Kingdom Sheffield United Kingdom Systems biology Medicine [] [] [] meetings_and_conferences [] [] -
Data Manipulation and Visualisation using R
15 December 2017
Sheffield, United Kingdom
Data Manipulation and Visualisation using R http://sbc.shef.ac.uk/training/r-tidyverse-2017-12-15 https://tess.elixir-europe.org/events/data-manipulation-and-visualisation-using-r It has been said that 80% of data analysis is spent on the process of cleaning and preparing the data. In this course we introduce some relatively-new additions to the R programming language; dplyr and ggplot2. In combination these provide a powerful toolkit to make the process of manipulating and visualising data easy and intuitive. 2017-12-15 09:30:00 UTC 2017-12-15 17:00:00 UTC Pam Liversidge Design Studio 2 - E06, Sheffield, United Kingdom Pam Liversidge Design Studio 2 - E06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to R
26 March 2018
Sheffield, United Kingdom
Introduction to R http://sbc.shef.ac.uk/training/r-introduction-2018-03-26 https://tess.elixir-europe.org/events/introduction-to-r-78ad016f-c086-4c38-95b9-7406d18597f3 R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2018-03-26 08:30:00 UTC 2018-03-26 16:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to RNA-seq
27 March 2018
Sheffield, United Kingdom
Introduction to RNA-seq http://sbc.shef.ac.uk/training/rna-seq-introduction-2018-03-27 https://tess.elixir-europe.org/events/introduction-to-rna-seq High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2018-03-27 08:30:00 UTC 2018-03-27 16:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Best practices in Research Data Management for Biological Sciences
30 April 2018
Sheffield, United Kingdom
Best practices in Research Data Management for Biological Sciences http://sbc.shef.ac.uk/training/data-management-2018-04-30 https://tess.elixir-europe.org/events/best-practices-in-research-data-management-for-biological-sciences As a researcher, you will encounter research data in many forms, ranging from measurements, numbers and images to documents and publications. Whether you create, receive or collect data, you will certainly need to organise it at some stage of your project. This workshop will provide an overview of some basic principles on how we can work with data more effectively. We will discuss the best practices for research data management and organisation so that our research is auditable and reproducible by ourselves, and others, in the future. 2018-04-30 12:00:00 UTC 2018-04-30 15:30:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to identifying and characterising variants from NGS data
4 - 5 June 2018
Sheffield, United Kingdom
Introduction to identifying and characterising variants from NGS data http://sbc.shef.ac.uk/training/variants-introduction-2018-06-04 https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-variants-from-ngs-data This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2018-06-04 08:30:00 UTC 2018-06-05 16:00:00 UTC Pam Liversidge Design Studio 2 - E06, Sheffield, United Kingdom Pam Liversidge Design Studio 2 - E06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to RNA-seq analysis in R
9 - 10 July 2018
Sheffield, United Kingdom
Introduction to RNA-seq analysis in R http://sbc.shef.ac.uk/training/rna-seq-in-r-2018-07-09 https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2018-07-09 08:30:00 UTC 2018-07-10 16:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to R
20 September 2018
Sheffield, United Kingdom
Introduction to R http://sbc.shef.ac.uk/training/r-introduction-2018-09-20 https://tess.elixir-europe.org/events/introduction-to-r-0eafb926-c56e-48c8-8212-d96bf47ea7f4 R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2018-09-20 08:30:00 UTC 2018-09-20 16:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to Statistical Analysis
24 October 2018
Sheffield, United Kingdom
Introduction to Statistical Analysis http://sbc.shef.ac.uk/training/stats-introduction-2018-10-24 https://tess.elixir-europe.org/events/introduction-to-statistical-analysis-57925cde-fdc6-49b3-8b1b-a66ccea04dd6 This course provides a refresher on the foundations of statistical analysis. Practicals are conducted using the ‘Shiny’ package; which provides an accessible interface to the R statistical language. Note that this is not a course for learning about the R statistical language itself. If you wish to learn more about R, please see other courses at the Sheffield Bioinformatics Core. 2018-10-24 10:00:00 UTC 2018-10-24 16:00:00 UTC Pam Liversidge Design Studio 2 - E06, Sheffield, United Kingdom Pam Liversidge Design Studio 2 - E06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to Genomic Variant Interpretation
6 - 7 November 2018
Sheffield, United Kingdom
Introduction to Genomic Variant Interpretation http://sbc.shef.ac.uk/training/variants-introduction-2018-11-06 https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-variants-from-ngs-data-d9eff52c-bd15-4e71-a1b8-a008ca616d24 This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2018-11-06 09:30:00 UTC 2018-11-07 17:00:00 UTC Bartolome House, Computer Room ALG04, Sheffield, United Kingdom Bartolome House, Computer Room ALG04 Sheffield United Kingdom S3 7ND [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to R
10 December 2018
Sheffield, United Kingdom
Introduction to R http://sbc.shef.ac.uk/training/r-introduction-2018-12-10 https://tess.elixir-europe.org/events/introduction-to-r-547c0a39-1293-4c80-a1f4-aee7d7ea3206 R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2018-12-10 09:30:00 UTC 2018-12-10 17:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to RNA-seq
17 December 2018
Sheffield, United Kingdom
Introduction to RNA-seq http://sbc.shef.ac.uk/training/rna-seq-introduiection-2018-12-17 https://tess.elixir-europe.org/events/introduction-to-rna-seq-dc2e12e3-0a12-4693-8997-63651830ecf9 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2018-12-17 09:30:00 UTC 2018-12-17 17:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to RNA-seq analysis in R
14 January 2019
Sheffield, United Kingdom
Introduction to RNA-seq analysis in R http://sbc.shef.ac.uk/training/rna-seq-in-r-2019-01-14 https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-59e3e3ee-b3da-4704-af24-63173b7bafde In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2019-01-14 09:30:00 UTC 2019-01-14 17:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Ensembl browser and REST API course, Gebze Tech University
4 - 6 February 2019
Gebze, Turkey
Ensembl browser and REST API course, Gebze Tech University http://www.ebi.ac.uk/training/events/2019/ensembl-browser-and-rest-api-course-gebze-tech-university https://tess.elixir-europe.org/events/ensembl-browser-and-rest-api-course-gebze-tech-university Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. Then learn to flexibly access these data using the Ensembl REST APIs in Python, Perl or R. 2019-02-04 09:00:00 UTC 2019-02-06 17:00:00 UTC Gebze Technical University, Gebze, Turkey Gebze Technical University Gebze Turkey 41400 [] Emily Perry [] [] [] [] HDRUK -
Introduction to R
7 February 2019
Sheffield, United Kingdom
Introduction to R http://sbc.shef.ac.uk/training/r-introduction-2019-02-07 https://tess.elixir-europe.org/events/introduction-to-r-1a71189d-660b-4509-b4b3-c3298dcefd0e R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2019-02-07 09:30:00 UTC 2019-02-07 17:00:00 UTC The Diamond - Workroom 2, Sheffield, United Kingdom The Diamond - Workroom 2 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
RNA-seq Analysis for Beginners
4 March 2019
Sheffield, United Kingdom
RNA-seq Analysis for Beginners http://sbc.shef.ac.uk/training/rna-seq-introduction-2019-03-04 https://tess.elixir-europe.org/events/introduction-to-rna-seq-15076391-e5f2-4c5c-8ea3-5b925a66b8a3 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2019-03-04 09:30:00 UTC 2019-03-04 17:00:00 UTC Pam Liversidge Building, Design Studio 1, D06, Sheffield, United Kingdom Pam Liversidge Building, Design Studio 1, D06 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Data Manipulation and Visualisation
29 March 2019
Sheffield, United Kingdom
Data Manipulation and Visualisation http://sbc.shef.ac.uk/training/r-introduction-2019-03-29 https://tess.elixir-europe.org/events/data-manipulation-and-visualisation R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2019-03-29 09:30:00 UTC 2019-03-29 17:00:00 UTC Bartolome House, Computer Room ALG04, Sheffield, United Kingdom Bartolome House, Computer Room ALG04 Sheffield United Kingdom S3 7ND [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to RNA-seq
11 April 2019
Sheffield, United Kingdom
Introduction to RNA-seq http://sbc.shef.ac.uk/training/rna-seq-introduction-2019-04-11 https://tess.elixir-europe.org/events/introduction-to-rna-seq-03705bbf-08b1-4e5d-b3ff-d48069b094b4 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2019-04-11 08:30:00 UTC 2019-04-11 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to identifying and characterising somatic variants
10 May 2019
Sheffield, United Kingdom
Introduction to identifying and characterising somatic variants http://sbc.shef.ac.uk/training/somatic-variants-introduction-2019-05-10 https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-somatic-variants This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2019-05-10 08:30:00 UTC 2019-05-10 16:00:00 UTC Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Introduction to Genomic Variant Interpretation
30 - 31 May 2019
Sheffield, United Kingdom
Introduction to Genomic Variant Interpretation http://sbc.shef.ac.uk/training/variants-introduction-2019-05-30 https://tess.elixir-europe.org/events/introduction-to-identifying-and-characterising-variants-from-ngs-data-bfeba574-0bba-47f5-9de9-fdabc6d50ce4 This course covers state-of-the-art and best-practice tools for the analysis of genomes. We describe, and give hands-on experience of, the entire analysis workflow from raw data generated by a sequencing machine to deriving variant calls (e.g. Single Nucleotide Variants) that are ready for downstream analysis, interpretation and prioritisation. We will describe the steps involved to go from sequencing library to a prioritised, clinically-relevant list of DNA variants. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control, variant-calling and annotation. 2019-05-30 08:30:00 UTC 2019-05-31 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
RNA-seq Analysis for Beginners
10 June 2019
Sheffield, United Kingdom
RNA-seq Analysis for Beginners http://sbc.shef.ac.uk/training/rna-seq-introduction-2019-06-10 https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2019-06-10 08:30:00 UTC 2019-06-10 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] [] -
Data Manipulation and Visualisation
21 June 2019
Sheffield, United Kingdom
Data Manipulation and Visualisation http://sbc.shef.ac.uk/training/r-introduction-2019-06-21 https://tess.elixir-europe.org/events/data-manipulation-and-visualisation-624117fd-575d-40d8-bfb0-a3ce7edbdf82 R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2019-06-21 08:30:00 UTC 2019-06-21 16:00:00 UTC Heart of the Campus, Sheffield Hallam University, Sheffield, United Kingdom Heart of the Campus, Sheffield Hallam University Sheffield United Kingdom S10 2BP [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
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