RNA-seq Analysis for Beginners
3 July 2020
Sheffield, United KingdomRNA-seq Analysis for Beginners http://sbc.shef.ac.uk/training/rna-seq-introduction-2020-07-03 https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners-13c9f173-2fdd-4ea6-9005-58aa798bf289 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2020-07-03 08:30:00 UTC 2020-07-03 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD  email@example.com   workshops_and_courses  
Introduction to RNA-seq analysis in R
13 - 14 July 2020
Sheffield, United KingdomIntroduction to RNA-seq analysis in R http://sbc.shef.ac.uk/training/rna-seq-in-r-2020-07-13 https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-34ffdcbc-a5b7-49ac-afb9-7d338a38ea26 In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2020-07-13 08:30:00 UTC 2020-07-14 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD  firstname.lastname@example.org   workshops_and_courses  
NGS bioinformatics quality control and variant annotation for cancer diagnosis
14 September 2020
Bern, SwitzerlandNGS bioinformatics quality control and variant annotation for cancer diagnosis https://www.sib.swiss/training/course/2020-09-ngs-clinical-qc-annot https://tess.elixir-europe.org/events/ngs-bioinformatics-quality-control-and-variant-annotation-for-cancer-diagnosis-46eda521-132e-4796-a920-cbbe89f76182 Overview This course is organised by SIB Swiss Institute of Bioinformatics, in collaboration with the Clinical Pathology Division of the University Hospital of Geneva (HUG). 2020-09-14 09:00:00 UTC 2020-09-14 00:00:00 UTC SIB, Bern, Switzerland SIB Bern Switzerland  email@example.com  Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses  
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