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3 events found

Country: Belgium 

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Organizer: VIB Bioinformatics Core 

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City: Bogota  or Heidelberg  or Fribourg  or Gent  or Niel  or Sevilla  or Edgbaston  or Bielefeld  or Leuven 

  • Introduction to the analysis of NGS data, online

    21 May - 4 June 2021

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data, online https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-online-1972b955-6863-42f5-887c-cd6090b1b227 This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Mapping of NGS data - Supporting IT: Galaxy and GenePattern platform 2021-05-21 09:00:00 UTC 2021-06-04 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Using MOFA for integration of omics data, online

    25 - 27 May 2021

    Gent, Belgium

    Elixir node event
    Using MOFA for integration of omics data, online https://tess.elixir-europe.org/events/using-mofa-for-integration-of-omics-data-online Participants can analyze their own data in the course. Both bulk and single cell applications will be discussed.  What kind of preprocessing of the data is required for MOFA? How to train MOFA on a multi-omic data set? How to interpret the MOFA factors by their loadings, using gene set enrichment or sample ordination? How to use MOFA for downstream analyses including regression, classification or clustering? How to impute missing values with MOFA? How to select the number of factors and compare different MOFA fits? 2021-05-25 09:00:00 UTC 2021-05-27 00:00:00 UTC VIB Bioinformatics Core iGent, Gent, Belgium iGent Gent Belgium 9052 [] [] [] [] [] []
  • Analysis of 16S rRNA metagenomic experiments, online

    14 - 16 June 2021

    Leuven, Belgium

    Elixir node event
    Analysis of 16S rRNA metagenomic experiments, online https://tess.elixir-europe.org/events/analysis-of-16s-rrna-metagenomic-experiments-online Processing and statistical analysis of 16S rRNA metagenomic experiments using R & Lotus pipeline. The following analytical steps from raw data to communicable results will be on the program: Metagenomic experiment planning, execution and analysis Analyzing amplicon sequencing data with up-to-date tools and how to increase the quality of ASVs and OTUs, when to use what technique Post-clustering of ASVs to avoid intra-genomic ASV false-positives Working with low-biomass experiments, removing exogenous contamination in several scenarios Numerical ecology focused analysis workflow for both metagenomic and amplicon sequencing based studies Analysis of alpha/beta diversity Univariate statistics to identify species enriched in sample groups Multivariate statistics and visualization to identify clusters of samples Assessing microbial communities based on ecological principles and species distributions 2021-06-14 09:00:00 UTC 2021-06-16 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []

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