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3 events found

Country: Germany 

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City: Bogota  or Heidelberg  or Fribourg  or Gent  or New Delhi  or Lausanne  or Saarbrücken 

  • Ensembl Browser Workshop, DKFZ, 5 May 2020

    5 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ, 5 May 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-5-may-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-05 09:00:00 UTC 2020-05-05 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, DKFZ, 6 May 2020

    6 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl REST API Workshop, DKFZ, 6 May 2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-dkfz-6-may-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-05-06 09:00:00 UTC 2020-05-06 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • DNA Methylation: Design to Discovery 2020

    18 - 19 May 2020

    Saarbrücken, Germany

    DNA Methylation: Design to Discovery 2020 https://tess.elixir-europe.org/events/dna-methylation-design-to-discovery-2020 Educators: Abdulrahman Salhab, Michael Scherer (de.NBI-Epi / HD-HuB) Date: 18 -19th May, 2020 Location: Saarbrücken Contents: This course aims to convey basic knowledge on the bioinformatic processing of DNA methylation data. Following the outline of a standard experiment we discuss qualities of various assays and when they are beneficial. In the first half there will be a slight focus on sequencing data. We will prepare raw sequence reads for alignment, methylation calls and identification of differentially methylated sites or regions. Throughout, we consider how experimental settings interact and influence the results and how quality control can be used to understand generated data and might improve on subsequent experiments. The second half will focus on how to evaluate the data and connect it to public resources to further understanding of the results. Presentations will be interleaved with practical sessions Learning goals: • Understand the bioinformatic processing of DNA methylation • Preparation and description of raw read files • Basic generation of methylation calls and differentially methylated regions • How to evaluate DNA methylation data Prerequisites: The course requires basic computer skills: • installation of programs • office package with focus on spread-sheets • Web-browsing Keywords: DNA methylation Tools: gemBS, RnBeads 2020-05-18 09:00:00 UTC 2020-05-19 17:00:00 UTC de.NBI Saarbrücken, Saarbrücken, Germany Saarbrücken Saarbrücken Germany [] [] [] workshops_and_courses [] []

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