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8 events found

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  • Data Science in Python

    2 - 3 September 2019

    Leuven, Belgium

    Elixir node event
    Data Science in Python https://tess.elixir-europe.org/events/data-science-in-python-ad0b7ba3-98d3-49d5-804a-d883beb39c63 After this course you should be able to: Recall how to define variables and most common data structures in Python Use conditions and loops in Python Practice reading and writing files with Python Explain how to write user-defined functions and modules in Python Use existing in-built as well as third-party Python libraries Solve more complex exercises using these concepts 2019-09-02 09:00:00 UTC 2019-09-03 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Introduction to the analysis of NGS data

    6 September 2019

    Leuven, Belgium

    Elixir node event
    Introduction to the analysis of NGS data https://tess.elixir-europe.org/events/introduction-to-the-analysis-of-ngs-data-4d6b015d-1f0b-4829-8a43-a9f61f9c7d02 This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of: - The Illumina platform - NGS data formats and file handling - Quality control of NGS data - Assembly and mapping of NGS data - Supporting IT: Galaxy and GenePattern platform 2019-09-06 09:00:00 UTC 2019-09-06 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Bulk RNASeq analysis for differential expression

    9 - 20 September 2019

    Leuven, Belgium

    Elixir node event
    Bulk RNASeq analysis for differential expression https://tess.elixir-europe.org/events/bulk-rnaseq-analysis-for-differential-expression During this training you will: execute a complete workflow at command line or in GenePattern to go from raw fastq files to count files execute a complete workflow in R to detect differential expression between two conditions initiate functional annotation and interpretation of the list of differentially expressed genes   2019-09-09 09:00:00 UTC 2019-09-20 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • Analysis of 16S rRNA metagenomic experiments

    4 October 2019

    Leuven, Belgium

    Elixir node event
    Analysis of 16S rRNA metagenomic experiments https://tess.elixir-europe.org/events/analysis-of-16s-rrna-metagenomic-experiments Processing and statistical analysis of 16S rRNA metagenomic experiments using R & Lotus pipeline. The following analytical steps from raw data to communicable results will be on the programme: - Preparation of sequencing data, read filtering, data cleaning - Data normalization - Numerical ecology: Clustering, Ordination, Diversity, Modelling - Univariate & Multivariate Statistics - Biological interpretation 2019-10-04 09:00:00 UTC 2019-10-04 00:00:00 UTC VIB Bioinformatics Core Park Inn by Radisson Leuven, Leuven, Belgium Park Inn by Radisson Leuven Leuven Belgium 3010 [] [] [] [] [] []
  • 5th Prague Autumn School - RNASeq Data Analysis Workshop

    7 - 11 October 2019

    Prague, Czechia

    Elixir node event
    5th Prague Autumn School - RNASeq Data Analysis Workshop https://tess.elixir-europe.org/events/5th-prague-autumn-school-rnaseq-data-analysis-workshop 2019-10-07 08:30:00 UTC 2019-10-11 17:00:00 UTC Institute of Molecular Genetics CAS, SEQme s.r.o. Conference Centre, Institute of Molecular Genetics, Videnska 1083, 14220 Prague, Czech Republic, Prague, Czechia Conference Centre, Institute of Molecular Genetics, Videnska 1083, 14220 Prague, Czech Republic Prague Hlavní město Praha Czechia 14220 Institute of Molecular Genetics CASSEQme s.r.o. [] Life Science Researchers 22 workshops_and_courses first_come_first_served Next generation sequencing data analysisnext generation sequencing RNA-Seq
  • The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition)

    10 - 11 October 2019

    Leuven, Belgium

    The Brain Mosaic: Cellular heterogeneity in the CNS (2nd edition) https://tess.elixir-europe.org/events/the-brain-mosaic-cellular-heterogeneity-in-the-cns-2nd-edition Recent advances in technology now allow us to explore multiple aspects of heterogeneity at the single cell level. Nowhere is this more important than in the Central Nervous System (CNS), where cellular heterogeneity has profound effects on all aspects of normal brain function and behavior and explains important aspects of disease pathology. With the second edition of the Brain Mosaic conference we aim to bring together leaders in this emerging discipline to discuss how it is advancing our knowledge of CNS function and disease. Speakers at this neuroscience meeting on ‘single cell’ will emphasize the multi-disciplinary nature of the field in several sessions: • Single cell sequencing and cell diversity • Spatial transcriptomics • New developments in technology and bioinformatics • CNS sequencing and relevance to disease research • Connections an activity Poster information: Format: A0 (841 x 1189 mm / 33.1 x 46.8 in), portrait orientation Deadlines: • Early Bird: 8 September 2019 • Late Registration: 26 September 2019 • Abstract deadline: 29 August 2019 2019-10-10 08:00:00 UTC 2019-10-11 18:00:00 UTC VIB Conferences KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat, Leuven, Belgium KU Leuven - Promotion & Jubileumzaal, Naamsestraat 22, 22, Naamsestraat Leuven Vlaams-Brabant Belgium 3000 Bioinformatics Transcriptomics Sequencing [] Evy Vierstraete +32 9 244 66 11 conferences@vib.be [] [] meetings_and_conferences [] Single cell sequencing Sequencingcell diversitySpatial transcriptomicsTranscriptomicstranscriptomicsAlzheimers Clinical Trials And StudiesAlzheimers DiseaseAmnesiaAnimal Models In DementiaAnxiety Autoimmune Disorders & Multiple SclerosisBehavioral IssuesBiopsychiatry Blood-Brain BarrierBrain DiagnosisBrain Disease & FailureBrain InjuryBrain TumourCentral Nervous SystemCerebrovascular DiseaseChild NeurologyClinical NeurophysiologyCNS TumorsCognitive DisordersDementiaDementia CareDemyelinationDiagnosis And TherapyEpilepsyGenetics Genetics And Epigenetics Geriatric NeurologyGut- Brain AxisHeadacheIntervention NeuroradiologyMeningitisMental HealthMental Health NursingMetastatisMovement DisordersMultiple SclerosisMultiple Sclerosis DiagnosisNervous SystemNeural EngineeringNeural EnhancementNeuro-Oncology NeuroanaatomyNeuroanatomyNeurocritical CareNeurodegenerationNeurodegenerative DisorderNeurodegenerative DisordersNeurogeneticsNeuroimagingNeuroimmunologyNeurological DisordersNeurological Disorders And StrokeNeurological InfectionsNeurological SurgeryNeurologistNeurologyNeuromedicinesNeuromuscular MedicineNeuronal AutoantibodiesNeuropathyNeuropeptidesNeuropharmacologyNeuroscienceNeurosurgeryNeurotoxicologyNeurotoxinsNeurotransmissionNeurotransmittersParkinsonParkinsons DiseasePediatric NeurologyPharmacology Psychiatry Psychology PsychoneuroimmunologyRecent Research And Case StudiesRehabilitation TherapyStem Cell Treatment For Neurological DisordersStrokesTraumatic Brain InjuryCNS sequencing disease researchbioinformatics• New developments in technology
  • Joint SIB / NBIS Autumn School Single Cell Analysis

    13 - 19 October 2019

    Leysin

    Elixir node event
    Joint SIB / NBIS Autumn School Single Cell Analysis https://tess.elixir-europe.org/events/nbis-sib-collaborative-course-single-cell-transcriptomics url: https://www.sib.swiss/training/course/2019-10_single-cell contact: education@nbis.se This course is organised by NBIS/SciLifeLab and the SIB PhD Training Network. Priority is given to their members, but is open to everyone. Overview Single-cell analysis of the various -omics makes possible to discover mechanisms, strains, expressions that would not be noticed when studying bulk cell populations. New developments lead more and more research groups to use this technology and this Autumn School will provide an overview of the various methods and fields of application through lectures and hands-on exercises. Generally, the afternoons will be dedicated to practical exercises where you will be able to apply the theoretical concepts learned during the morning session. Sometimes there will be a mix of both. One afternoon will be devoted to a social activity. See the preliminary program below for more details... Audience This course is addressed to PhD students, postdocs and scientists starting to work with single cell technologies and analysis. Learning objectives The first objective of this school is to provide participants with a broad knowledge of single cell analysis that would enable them to understand its application in general. This would be achieved via the multiple lectures provided by our lecturers throughout the week. The second objective is to enable participants to apply single cell analysis in their own research. This would be achieved by all the exercises that would follow the theoretical lectures. The third objective is networking with the lecturers and also the other participants that will most likely share similar interests. Prerequisites Knowledge / competencies Students should have intermediate to advanced R skills (able to read, understand and write R scripts), know how to use common R/Bioconductor packages, be familiar with the typical steps involved in a bulk RNA-seq (both experimental and data analysis parts). Technical Students should be able to bring their own laptop with R and RStudio installed. A list of required R-packages will be sent before the course and these should be installed prior to the course start. Program Sunday ≈17-18h: arrival of the participants, check-in Welcome and dinner Monday: Transcriptomics Introductory lecture: Vincent Gardeux, Laboratory of Systems and Genetics, EPFL / SIB, Lausanne, Switzerland. Quantification, QC & Normalization: Davide Risso, Department of Statistical Sciences, University of Padova, Italy. Dimensionality reduction: Paulo Czarnewski, NBIS, Uppsala University, SciLifeLab, Uppsala, Sweden. Tuesday: Transcriptomics Batch correction: Panagiotis Papasaikas, Computational Biology Group, Friedrich Miescher Institute for Biomedical Research / SIB, Basel. Switzerland. Clustering - methods overview: Charlotte Soneson, Computational Biology Group, Friedrich Miescher Institute for Biomedical Research / SIB, Basel, Switzerland. Cell fate mapping and trajectories: Robrecht Cannoodt, VIB-UGent Center for Inflammation Research, Gent, Belgium. Wednesday: Transcriptomics Differential expression: Charlotte Soneson, Computational Biology, Friedrich Miescher Institute for Biomedical Research / SIB, Basel, Switzerland. Afternoon: Team activity Evening: Keynote lecture: Alejandro Sifrim, Laboratory of Reproductive Genomics, KU Leuwen, Belgium. Thursday: Proteomics Transcriptome + proteome: Johan Reimegård, Uppsala University, SciLifeLab, Uppsala, Sweden. Differential abundance and differential state analysis of single cell cytometry data: Mark Robinson & Helena Crowell, Statistical Genomics, University of Zurich / SIB, Zurich, Switzerland. Friday: Other omics and integration Spatial mapping of scRNAseq: Lars Borm, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. Lineage tracing and scRNA: Maria Florescu, Hubrecht Institute, Developmental Biology and Stem Cell Research, Utrecht, Netherlands. Data integration methods: Sebastien Smallwood, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland. End of the event around 14h30. Application Before applying, be sure your profile matches the prerequisites and do not forget to take this survey. If you do not take the survey, your application will not be taken into consideration. Please use the same email address for the application and the survey. Registration fees are the following: 250 Swiss Francs for members of the SIB PhD Training Network and for PhD students enrolled at a Swedish University, 600 Swiss Francs for other academics, 1200 Swiss Francs for for-profit institutions. This includes full course fees, full board accommodation at the hotel and coffee breaks. Deadline for application and free-of-charge cancellation is set is set to 16 September 2019. Cancellation after this date will not be reimbursed. Please note that participation to SIB courses is subject to our general conditions. You will be informed by email of your registration confirmation. Click to apply Venue and Time Location: Hotel Central Residence & Spa, Leysin, Switzerland. Arrival: Sunday before 18h Departure: Friday around 14h30 Additional information Coordination: Björn Nystedt (NBIS/SciLifeLab), Grégoire Rossier (SIB). Scientific Committe: Åsa Björklund (NBIS/SciLifeLab), Michael Stadler & Charlotte Soneson (SIB and FMI Basel), Vincent Gardeux (EPFL). For more information, please contact Grégoire Rossier. 2019-10-13 09:00:00 UTC 2019-10-19 00:00:00 UTC Leysin Leysin [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Workshop: Oxford Nanopore long reads - de novo assembly

    6 - 7 November 2019

    Prague, Czechia

    Elixir node event
    Workshop: Oxford Nanopore long reads - de novo assembly https://tess.elixir-europe.org/events/workshop-oxford-nanopore-long-reads-de-novo-assembly 2019-11-06 08:30:00 UTC 2019-11-07 17:00:00 UTC Institute of Molecular Genetics CAS, SEQme s.r.o. Institute of Molecular Genetics, Vídeňská 1083, 1083, Prague 4, Prague, Czechia Institute of Molecular Genetics, Vídeňská 1083, 1083, Prague 4 Prague Hlavní město Praha Czechia 14220 Institute of Molecular Genetics, CASSEQme s.r.o. [] Life Science Researchers 23 workshops_and_courses first_come_first_served Next generation sequencing data analysis
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