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3 events found

Event types: Workshops and courses 

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City: Bogota  or Heidelberg  or Campinas  or La Molina  or Melbourne  or Amsterdam  or Fribourg 

  • Software Carpentry Workshop

    16 - 18 October 2019

    Heidelberg, Germany

    Software Carpentry Workshop https://tess.elixir-europe.org/events/software-carpentry-workshop-ab3af408-aa91-49ed-bab2-5db1f2e6d15d Educators: Malvika Sharan, Georg Zeller, Mike Smith, Thomas Schwarzl, Frank Thommen (HD-HuB), Holger Dinkel Date: 16-10-2019 - 18-10-2019 09:00-18:00 Location: ATC Computer Training Lab, EMBL Heidelberg Contents: Computation is an integral part of today's research as data has grown too large or too complex to be analysed by hand. An ever-growing fraction of science is performed computationally and many wet-lab biologists spend part of their time on the computer. Many scientists struggle with this aspect of research as they have not been properly trained in the necessary set of skills. The result is that too much time is spent using inefficient tools when progress could be faster. This course provides training in several key tools, with a focus on good development practices that encourage efficient and reproducible research computing. Topics covered include: Introduction to Python scripting Introduction to the Unix shell and usage of cluster resources Version control with Git and Github Analysis pipeline management Scientific Python & working with biological data Literate programming with Jupyter notebooks Learning goals: This course aims to teach software writing skills and best practices to researchers in biology who wish to analyse data, and to introduce a toolset that can help them in their work. The goal is to enable them to be more productive and to make their science better and more reproducible. Prerequisites: This is a course for researchers in the life sciences who are using computers for their analyses, even if not full time. The target student will be familiar with some command line/programmatic computer usage, will want to become more confident using these tools efficiently and reproducibly. A target student will have written a for loop in some language before, but will not know what git is (or at least not be very comfortable using git). Keywords: Programming; Command Line; Version Control; Bioinformatics; Data Analysis; Cluster Computing Tools: Python; Bash; Unix/Linux; Git; GitHub; SnakeMake; Biopython; Pandas; Numpy; SciPy; Matplotlib 2019-10-16 09:00:00 UTC 2019-10-18 17:00:00 UTC de.NBI / ELIXIR Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • Final OpenRiskNet Workshop

    23 - 24 October 2019

    Amsterdam, Netherlands

    Final OpenRiskNet Workshop https://tess.elixir-europe.org/events/final-openrisknet-workshop The workshop is addressing all OpenRiskNet stakeholders (scientific, industrial and regulatory communities) that are invited to participate in this interactive event. This will ensure that all relevant and target groups that need to be aware of the project achievements have access to this information and are enabled to give feedback, and also be trained on the provided solutions. 2019-10-23 09:00:00 UTC 2019-10-24 17:00:00 UTC OpenRiskNet O|2 Human Life Sciences building, De Boelelaan 1108, 1081 HZ Amsterdam, The Netherlands, Amsterdam, Netherlands O|2 Human Life Sciences building, De Boelelaan 1108, 1081 HZ Amsterdam, The Netherlands Amsterdam Netherlands 1081 Vrije Universiteit Amsterdam [] [] workshops_and_courses [] e-infrastructuresrisk assessment
  • Automating neuroimaging analysis workflows with Nipype, Arcana and Banana

    15 November 2019

    Melbourne, Australia

    Automating neuroimaging analysis workflows with Nipype, Arcana and Banana https://tess.elixir-europe.org/events/automating-neuroimaging-analysis-workflows-with-nipype-arcana-and-banana Automating neuroimaging analysis workflows 2019-11-15 09:15:00 UTC 2019-11-15 17:00:00 UTC CVL Melbourne, Australia Melbourne Australia 2001 [] [] [] workshops_and_courses [] []
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