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  • CABANA Workshop: Analysis of Crop Genomics Data

    16 - 20 March 2020

    Bogota, Colombia

    Elixir node event
    CABANA Workshop: Analysis of Crop Genomics Data https://tess.elixir-europe.org/events/cabana-workshop-analysis-of-crop-genomics-data-0d1c7271-613b-4672-bac5-19f641f9be70 This course will introduce crop biologists to methods and approaches for analysing crop genomics data. 2020-03-16 08:30:00 UTC 2020-03-20 12:30:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Marco Cristancho [] [] [] [] HDRUK
  • Introduction to Regular Expressions

    18 March 2020

    Heidelberg, Germany

    Introduction to Regular Expressions https://tess.elixir-europe.org/events/introduction-to-regular-expressions Educators: Supriya Khedkar, Toby Hodges (HD-HuB) Date: 18/03/2020 09:30 - 16:00 Location: EMBL Heidelberg; Room 202 Contents: Do you often work with lots of data files on the computer, are you often trying to spot particular files or lines of text in them that are important for you? If so, then using regular expressions could save you a lot of time and frustration! Regular expressions (regex/REs) are a language designed to describe patterns of characters that you want to match in a body of text. For example, if you want to extract every Ensembl Gene ID in a GFF file, find tandem repeats in a large set of sequences, or extract every email address in a large document, regular expressions are the perfect tool. Regular expressions are incorporated into a wide range of software and programming languages, and the workshop will include examples of their use on the UNIX command line and in R and Python. Learning goals: This workshop will provide an introduction to REs and cover some of the simple but powerful ways that these can be used to find patterns in large volumes of text data. The workshop will be interactive and driven by examples to demonstrate how you might use regular expressions in your work. Prerequisites: Participants are required to bring their own laptop to the workshop, with a text editor suitable for programming (e.g. Atom, Sublime Text, VSCode, Notepad++) installed. Keywords: UNIX command line, R, Python Tools: UNIX command line, R, Python 2020-03-18 09:00:00 UTC 2020-03-18 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • Data Management Planning workshop for Life Science Projects

    20 March 2020

    Trondheim, Norway

    Elixir node event
    Data Management Planning workshop for Life Science Projects https://tess.elixir-europe.org/events/data-managment-planning-workshop We are pleased to announce the Data Management planning workshop for Life Scientists organised in Trondheim by [ELIXIR Norway](https://www.elixir-norway.org/), [Digital Life Norway](https://digitallifenorway.org/) and [Research Data@NTNU](https://innsida.ntnu.no/researchdata). The intended audience are researchers (PhD candidates, Post Doctoral Fellows, Researchers, Associate Professors and Professors) that are planning to submit a grant application for a research project. Max. number of participants is 30. The topic is on how you can generate a data management plan for a Life Science research project that will meet the requirements of the funding organisations. ## Course content: ##### 0900 - 0945 Requirements from institutions & funding bodies * NTNU * H2020/ERC * Research Council Norway ##### 0945 - 1015 About legal requirements * Health Research Act * Personal Data Act ##### 1015 - 1030 Short break ##### 1030 - 1115 Licensing of data, biological material and software ##### 1115 - 1200 Information on national and local storage infrastructures * NeLS/StoreBioInfo * NIRD * NTNU Computing & Storage resources * TSD * HUNT-Cloud * NICE-1 ##### 1200 - 1230 Lunch ##### 1230 - 1315 Relevant deposition repositories/ data archives * domain specific archives (ELIXIR/EMBL-EBI, NCBI) * NIRD archive * NTNU Open Research Data/ DataverseNO * NSD ##### 1315 - 1330 Short break ##### 1330 - 1600 Hands on training and assistance to generate a data management plan ## Requirements: Bring your own laptop and your research project if you have one. You will get the opportunity to set up a data management plan for your project with help of the [Data Steward Wizard tool](https://elixir-no.ds-wizard.org) using a structured and detailed questionnaire with references to relevant resources. #### [Register](https://skjemaker.app.uib.no/view.php?id=7885006) before 10 March 2020 2020-03-20 09:00:00 UTC 2020-03-20 16:00:00 UTC ELIXIR-Norway Olav Kyrres gate, 17 KS21 http://bit.ly/2tG9ysW, Trondheim, Norway Olav Kyrres gate, 17 KS21 http://bit.ly/2tG9ysW Trondheim Norway 7030 Data management Norwegian University of Science and Technology Ingrid Heggland, Morten Beck Rye, Korbinian Bösl Digital Life Norway PhD studentsPost DocsResearchersProfessorsAll postgraduates 30 workshops_and_courses first_come_first_served DMPdata managementData management plan
  • Ensembl Browser Workshop, DKFZ, 5 May 2020

    5 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl Browser Workshop, DKFZ, 5 May 2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-5-may-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-05 09:00:00 UTC 2020-05-05 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • Ensembl REST API Workshop, DKFZ, 6 May 2020

    6 May 2020

    Heidelberg, Germany

    Elixir node event
    Ensembl REST API Workshop, DKFZ, 6 May 2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-dkfz-6-may-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-05-06 09:00:00 UTC 2020-05-06 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120 [] Astrid Gall [] [] [] [] HDRUK
  • ELIXIR Norway All Hands Meeting 2020

    21 - 23 October 2020

    Trondheim, Norway

    ELIXIR Norway All Hands Meeting 2020 https://tess.elixir-europe.org/events/elixir-norway-all-hands-meeting-2020 Yearly gathering of all hands involved in ELIXIR Norway, including our SAC and stakeholder panel. 2020-10-21 09:00:00 UTC 2020-10-23 16:00:00 UTC ELIXIR Norway Scandic Nidelven, 1-3, Havnegata, Trondheim, Norway Scandic Nidelven, 1-3, Havnegata Trondheim Norway [] christine.stansberg@uib.no [] [] meetings_and_conferences [] []
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