Proteomics and Metabolomics with OpenMS
27 - 29 April 2020
Boston, United States of AmericaProteomics and Metabolomics with OpenMS https://www.denbi.de/training/750-openms-proteomics-and-metabolomics-course https://tess.elixir-europe.org/events/openms-proteomics-and-metabolomics-course Educators: Oliver Kohlbacher, Julianus Pfeuffer, Timo Sachsenberg (CIBI), assisted by Oliver Alka Date: April 27 - April 29 Location: Northeastern University 315 and 320 Shillman Hall 115 Forsyth Street, Boston, Massachusetts 02115, USA Keynote Speakers: Oliver Kohlbacher Contents: The course introduces key concepts of non-targeted label-free proteomics and metabolomics. Non-targeted methods are ideal for unbiased discovery studies and scale well for large-scale studies (e.g., clinical proteomics/metabolomics). Based on example datasets we will then introduce several open-source software tools for proteomics and metabolomics, primarily focusing on OpenMS (www.OpenMS.org). We will demonstrate how these tools can be combined into complex data analysis workflows including visualization of results. Participants will have the opportunity to bring their own data and design custom analysis workflows together with instructors. Target audience: Target audience are experimental scientists with experience in proteomic and/or metabolomic research. We also welcome computational scientists interested in working with raw mass spectrometric data. Software Requirements: The participants should bring their own laptop computers. Instructions regarding downloading and installing all required software (Windows, OSX, or Linux) will be provided prior to the course. Installer versions of all required software will be available. Keywords: LC-MS based proteomics and metabolomics, OpenMS, workflows, KNIME, data analysis Tools: OpenMS, KNIME 2020-04-27 09:00:00 UTC 2020-04-29 17:00:00 UTC de.NBI Boston, Boston, United States of America Boston Boston Suffolk County United States of America    workshops_and_courses  
Ensembl Browser Workshop, DKFZ, 5 May 2020
5 May 2020
Heidelberg, GermanyEnsembl Browser Workshop, DKFZ, 5 May 2020 http://www.ebi.ac.uk/training/events/2020/ensembl-browser-workshop-dkfz-5-may-2020 https://tess.elixir-europe.org/events/ensembl-browser-workshop-dkfz-5-may-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-05-05 09:00:00 UTC 2020-05-05 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120  Astrid Gall     HDRUK
Ensembl REST API Workshop, DKFZ, 6 May 2020
6 May 2020
Heidelberg, GermanyEnsembl REST API Workshop, DKFZ, 6 May 2020 http://www.ebi.ac.uk/training/events/2020/ensembl-rest-api-workshop-dkfz-6-may-2020 https://tess.elixir-europe.org/events/ensembl-rest-api-workshop-dkfz-6-may-2020 Work with Ensembl to master the Ensembl REST API and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2020-05-06 09:00:00 UTC 2020-05-06 09:00:00 UTC Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC), Heidelberg, Germany Deutsches Krebsforschungszentrum (DKFZ) - German Cancer Research Centre (GCRC) Heidelberg Germany 69120  Astrid Gall     HDRUK
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