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  • 2nd de.NBI Cloud User Meeting

    3 - 5 September 2019

    Heidelberg, Germany

    2nd de.NBI Cloud User Meeting https://tess.elixir-europe.org/events/2nd-de-nbi-cloud-user-meeting Educators: de.NBI Cloud Group Date: 03.09 to 05.09 Location: Heidelberg What is it about? The 2nd de.NBI Cloud User Meeting is an upcoming 3-day event (03.09.2018-05.09.2018) in Heidelberg for people interested in Bioinformatics, Cloud Computing or Big Data. Due to the diversity of approaches that arise in this exciting and rapidly evolving cloud computing technology niche, this meeting should help to exchange ideas and approaches in the growing de.NBI Cloud community. We aim to advantage our attendees, from beginner to expert, with comprehensive understanding of the very broad application and benefit of the de.NBI Cloud. This event is your chance of meeting users, developers and administrators using the de.NBI Cloud. We feature topics from introduction or use case talks to introduce different technologies (OpenStack, Docker, Kubernetes, Nextflow, ….) to tutorials and workshops that will help understand how to actually apply the technology in your research. Confirmed Speakers Matthias König – Humboldt-University Berlin Alan Beccati – Max Planck In­sti­tute for Mar­ine Mi­cro­bi­o­logy Alexander Peltzer – Quantitative Biology Center (QBIC) Johannes Werner – Leibniz-Institute for Baltic Sea Research Jens Preussner – Max Planck Institute for Heart and Lung Research Marius Dieckmann – Bioinformatics and Systems Biology, Justus University Giessen Björn Grüning – Bioinformatics Group Freiburg University Helena Rasche – Bioinformatics Group Freiburg University Jan Krüger – Computational Metagenomics, Bielefeld University Who should attend this meeting? We welcome people from all background, no matter if you are new to the de.NBI Cloud or considering to submit a project application, to learn and network in our growing community. What to bring? Laptop Preliminary Agenda: 03.09. (13:00 – 18:00): Presentation of use cases 04.09. (09:00 – 17:00): Workshop 05.09. (09:00 – 13:00): Workshop Registration Deadline 23.08.2019 Further Information and registration at https://cloud.denbi.de/2nd-de-nbi-cloud-user-meeting/ 2019-09-03 13:00:00 UTC 2019-09-05 17:00:00 UTC de.NBI Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] meetings_and_conferences [] []
  • Software Carpentry Workshop

    16 - 18 October 2019

    Heidelberg, Germany

    Software Carpentry Workshop https://tess.elixir-europe.org/events/software-carpentry-workshop-ab3af408-aa91-49ed-bab2-5db1f2e6d15d Educators: Malvika Sharan, Georg Zeller, Mike Smith, Thomas Schwarzl, Frank Thommen (HD-HuB), Holger Dinkel Date: 16-10-2019 - 18-10-2019 09:00-18:00 Location: ATC Computer Training Lab, EMBL Heidelberg Contents: Computation is an integral part of today's research as data has grown too large or too complex to be analysed by hand. An ever-growing fraction of science is performed computationally and many wet-lab biologists spend part of their time on the computer. Many scientists struggle with this aspect of research as they have not been properly trained in the necessary set of skills. The result is that too much time is spent using inefficient tools when progress could be faster. This course provides training in several key tools, with a focus on good development practices that encourage efficient and reproducible research computing. Topics covered include: Introduction to Python scripting Introduction to the Unix shell and usage of cluster resources Version control with Git and Github Analysis pipeline management Scientific Python & working with biological data Literate programming with Jupyter notebooks Learning goals: This course aims to teach software writing skills and best practices to researchers in biology who wish to analyse data, and to introduce a toolset that can help them in their work. The goal is to enable them to be more productive and to make their science better and more reproducible. Prerequisites: This is a course for researchers in the life sciences who are using computers for their analyses, even if not full time. The target student will be familiar with some command line/programmatic computer usage, will want to become more confident using these tools efficiently and reproducibly. A target student will have written a for loop in some language before, but will not know what git is (or at least not be very comfortable using git). Keywords: Programming; Command Line; Version Control; Bioinformatics; Data Analysis; Cluster Computing Tools: Python; Bash; Unix/Linux; Git; GitHub; SnakeMake; Biopython; Pandas; Numpy; SciPy; Matplotlib 2019-10-16 09:00:00 UTC 2019-10-18 17:00:00 UTC de.NBI / ELIXIR Heidelberg, Heidelberg, Germany Heidelberg Heidelberg Karlsruhe Germany [] [] [] workshops_and_courses [] []
  • ELIXIR Norway All Hands Meeting

    23 - 24 October 2019

    Oslo, Norway

    ELIXIR Norway All Hands Meeting https://tess.elixir-europe.org/events/elixir-norway-all-hands-meeting-2019 Yearly gathering of all hands involved in ELIXIR Norway, including our stakeholder panel. Immediately followed by a meeting with the SAC. 2019-10-23 12:00:00 UTC 2019-10-24 13:00:00 UTC ELIXIR Norway Thon Hotel Opera, 4, Dronning Eufemias gate, Oslo, Norway Thon Hotel Opera, 4, Dronning Eufemias gate Oslo Norway [] [] [] meetings_and_conferences [] []
  • CABANA Workshop: Introduction to Metagenomics

    2 - 6 December 2019

    Buenos Aires, Argentina

    Elixir node event
    CABANA Workshop: Introduction to Metagenomics https://tess.elixir-europe.org/events/cabana-workshop-introduction-to-metagenomics In this course participants will learn the basics of metagenomics, covering experimental design and workflows, moving through to microbiome analysis via shotgun metagenomics. 2019-12-02 08:30:00 UTC 2019-12-06 17:30:00 UTC Faculty of Natural Sciences - University of Buenos Aires (FCEN-UBA), Buenos Aires, Argentina Faculty of Natural Sciences - University of Buenos Aires (FCEN-UBA) Buenos Aires Argentina 1428 [] Derrin Crawte [] [] [] [] []
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