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  • Metabolomics: Understanding Metabolism in the 21st Century

    23 September - 18 October 2019

    Edgbaston, United Kingdom

    Elixir node event
    Metabolomics: Understanding Metabolism in the 21st Century https://tess.elixir-europe.org/events/metabolomics-understanding-metabolism-in-the-21st-century-8c9cebe4-268d-4e19-9073-3a9d99e51df5 This online course explores metabolomics, an emerging field that aims to measure the complement of metabolites (the metabolome) in living organisms. The metabolome represents the downstream effect of an organism's... 2019-09-23 09:00:00 UTC 2019-10-18 23:59:00 UTC Online, Edgbaston, United Kingdom Online Edgbaston United Kingdom B15 2TT [] [] [] [] [] []
  • Norwich Single-Cell Symposium 2019

    16 - 17 October 2019

    Norwich, United Kingdom

    Norwich Single-Cell Symposium 2019 https://tess.elixir-europe.org/events/norwich-single-cell-symposium-2019 Now in its third year, the Symposium covers single-cell genomics technologies and their application in microbial, plant, animal and human health and disease. The symposium offers a forum for researchers to discuss the latest developments in single-cell genomics, and network with other researchers with the intention of catalysing future development and application of single-cell genomics across the UK. Topics to be covered include: Single cell genomics in plant and microbial research Single cell genomics in health, disease and development Single cell informatics Single cell technology development 2019-10-16 10:00:00 UTC 2019-10-17 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk 10x GenomicsBlacktraceCelseeNew England BiolabsTakara Bio EuropeTTP Laptech Single Cell researchers meetings_and_conferences [] Single Cell GenomicsSingle Cell technologiesSingle Cell Sequencing
  • SPHN Data Privacy and IT Security Training

    25 October 2019

    Lausanne, Switzerland

    Elixir node event
    SPHN Data Privacy and IT Security Training https://tess.elixir-europe.org/events/sphn-data-privacy-and-it-security-training-45f9b664-6a6d-4fd1-bcad-c2201297c947 Overview Within the Swiss Personalized Health Network (SPHN) and related national initiatives researchers use patient data (i.e., confidential human data) in their research projects. 2019-10-25 09:00:00 UTC 2019-10-25 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Lipidomics MS Data processing, identification & quantification - Lipidomics Forum 2019

    10 November 2019

    Borstel, Germany

    Lipidomics MS Data processing, identification & quantification - Lipidomics Forum 2019 https://tess.elixir-europe.org/events/lipidomics-ms-data-processing-identification-quantification-lipidomics-forum-2019 Educators: Jacobo Miranda Ackermann, Nils Hoffmann (BioInfra.Prot / LIFS) Date: November 10th, 2019 Location: Forschungszentrum Borstel, Borstel, Germany (as part of Lipidomics Forum 2019) Contents: In this course, we will work through a typical use-case for bioinformatics processing lipidomics data following MS acquisition. The first part of the course will start with PeakStrainer and LipidXplorer for filtering, identification and quantification of lipid signals from shotgun lipidomics. The second part of the course will work through an example for targeted LC-MS lipidomics with LipidCreator and Skyline. The course will consist of a short theory and background overview of the employed programs complemented by the application of the tools to a provided data set. 10:00 - 10:45 Common Introduction 10:45 - 12:30 LipidXplorer Shotgun Lipidomics 12:30 - 13:30 Lunch break 13:30 - 16:30 LipidCreator & Skyline Targeted LC-MS lipidomics Learning goals: Participants will be able to understand and explain the shotgun MS and targeted LC-MS workflows for lipidomics. They will learn the fundamentals of the software tools used and how to choose parameters for them. They will learn to understand and interpret the results of each step of the pipeline. Prerequisites: Basic knowledge of lipidomics, analytical workflows in lipidomics and basic familiarity with web-based and desktop applications. Participants are required to bring their own laptop in order to work on the hands-on exercises. Keywords: Lipidomics, Shotgun, Targeted, LC-MS Tools: PeakStrainer and LipidXplorer, LipidCreator, Skyline 2019-11-10 09:00:00 UTC 2019-11-10 17:00:00 UTC de.NBI Borstel, Borstel, Germany Borstel Borstel Germany [] [] [] [] [] []
  • Statistical analysis & qualitative and quantitative comparison of lipidomics data - Lipidomics Forum 2019

    10 November 2019

    Borstel, Germany

    Statistical analysis & qualitative and quantitative comparison of lipidomics data - Lipidomics Forum 2019 https://tess.elixir-europe.org/events/statistical-analysis-qualitative-and-quantitative-comparison-of-lipidomics-data-lipidomics-forum-2019 Educators: Fadi al Machot, Nils Hoffmann (BioInfra.Prot / LIFS) Date: November 10th, 2019 Location: Forschungszentrum Borstel, Borstel, Germany (as part of Lipidomics Forum 2019) Contents: In this course, we will work through a typical use-case of downstream data processing of shotgun lipidomics data following MS acquisition with LipidXplorer. We will inspect, check and normalize the data as well as calculate absolute quantities using internal class-specific standards. We will then perform a qualitative comparison of the lipidomes using the LUX Score lipidome homology, before finally comparing and visualizing our quantitative lipidome results with ClovR. The course will consist of a short theory and background overview of the employed programs complemented by the application of the tools to provided data sets. 10:00 - 10:45 Common Introduction 10:45 - 12:30 R Scripting for LipidXplorer data quantification Quantitative lipidome comparison wiht ClovR 12:30 - 13:30 Lunch break 13:30 - 16:30 Qualitative lipidome with LUX Score Machine learning, clustering and classification for lipidomics data Learning goals: Participants will be able to understand and explain the shotgun lipidomics data analysis workflow. They will learn the fundamentals of the software tools used and how to choose parameters for them. They will learn to understand and interpret the results of each step of the pipeline. Prerequisites: Basic knowledge of lipidomics, analytical workflows in lipidomics and basic familiarity with web-based applications. Basic knowledge of R and RStudio is a plus to understand the quantitation workflow. Participants are required to bring their own laptop in order to work on the hands-on exercises. Keywords: Lipidomics, Statistical Analysis, Visualization Tools: R, RStudio, LUX Score, ClovR. 2019-11-10 09:00:00 UTC 2019-11-10 17:00:00 UTC de.NBI Borstel, Borstel, Germany Borstel Borstel Germany [] [] [] workshops_and_courses [] []
  • Data Management Plan

    28 - 29 November 2019

    Lausanne, Switzerland

    Elixir node event
    Data Management Plan https://tess.elixir-europe.org/events/data-management-plan-812edd6d-94f8-445e-9830-257ec0790d90 NEW course date: 28-29 November 2019 Overview Recent studies have shown that worldwide, between 51% and 89% of published life sciences research is not reproducible, with consequent losses estimated at around $100 billions/year in biomedical research 2019-11-28 09:00:00 UTC 2019-11-29 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • CABANA Workshop: Analysis of Crop Genomics Data

    2 - 6 December 2019

    Bogota, Colombia

    Elixir node event
    CABANA Workshop: Analysis of Crop Genomics Data https://tess.elixir-europe.org/events/cabana-workshop-analysis-of-crop-genomics-data This course will introduce crop biologists to methods and approaches for analysing crop genomics data. 2019-12-02 08:30:00 UTC 2019-12-06 12:45:00 UTC Universidad de los Andes - UniAndes, Bogota, Colombia Universidad de los Andes - UniAndes Bogota Colombia 111711 [] Marco Cristancho [] [] [] [] HDRUK
  • Advanced R Shiny

    3 December 2019

    Lausanne, Switzerland

    Elixir node event
    Advanced R Shiny https://tess.elixir-europe.org/events/advanced-r-shiny-a89ad51d-0f85-4fbb-9dc3-fc055b677e84 Overview Shiny is the leading R package for developing interactive web apps. These give your clients, users, or students the power and sophistication of R with a friendly, no-code interface custom designed to your purpose. 2019-12-03 09:00:00 UTC 2019-12-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • First steps with Git for reproducible research (date to be confirmed)

    5 December 2019

    Lausanne, Switzerland

    Elixir node event
    First steps with Git for reproducible research (date to be confirmed) https://tess.elixir-europe.org/events/first-steps-with-git-for-reproducible-research More information soon 2019-12-05 09:00:00 UTC 2019-12-05 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training

    12 December 2019

    Lausanne, Switzerland

    Elixir node event
    High Performance Computing (HPC) in Life Sciences: Vital-IT Infrastructure Training https://tess.elixir-europe.org/events/high-performance-computing-hpc-in-life-sciences-vital-it-infrastructure-training-7a057fe4-5717-4c6a-a567-ba2cb95bb755 Overview Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. 2019-12-12 09:00:00 UTC 2019-12-12 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Software Carpentry

    21 - 22 January 2020

    Norwich, United Kingdom

    Software Carpentry https://tess.elixir-europe.org/events/software-carpentry-e28d91b4-59e7-47d7-a7f0-54b3d09e0172 Our goal is to help scientists become more productive by teaching them basic computing skills like program design, version control, testing and task automation. In this two-day bootcamp, short tutorials will alternate with hands-on practical exercises. Participants will be encouraged both to help one another, and to apply what they have learned to their own research problems during and between sessions. 2020-01-21 09:00:00 UTC 2020-01-22 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk [] PhD studentspost-docspostgrad workshops_and_courses first_come_first_served SoftwareCarpentrypythonUnix Shell
  • First steps with Git for reproducible research

    27 February 2020

    Lausanne, Switzerland

    Elixir node event
    First steps with Git for reproducible research https://tess.elixir-europe.org/events/first-steps-with-git-for-reproducible-research-date-to-be-confirmed More information soon 2020-02-27 09:00:00 UTC 2020-02-27 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Data Carpentry

    3 - 4 March 2020

    Norwich, United Kingdom

    Data Carpentry https://tess.elixir-europe.org/events/data-carpentry-6bde217e-337f-4bea-96f7-e419c62f5fe9 Data Carpentry workshops are for any researcher who has data they want to analyse, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. 2020-03-03 09:00:00 UTC 2020-03-04 17:00:00 UTC Earlham Institute Earlham Institute (EI), Colney Lane, Norwich, United Kingdom Earlham Institute (EI), Colney Lane Norwich Norfolk United Kingdom NR4 7UZ Earlham Institute training@earlham.ac.uk [] post-docsPhD studentspostgrad workshops_and_courses first_come_first_served Data carpentryCommand lineData analysis
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