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55 events found

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  • Introduction to Image Analysis

    14 November 2016

    Uppsala

    Elixir node event
    Introduction to Image Analysis https://tess.elixir-europe.org/events/introduction-to-image-analysis 2016-11-14 00:00:00 UTC 2016-11-14 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Metagenomics, 1 hp

    22 - 23 November 2016

    Uppsala

    Elixir node event
    Metagenomics, 1 hp https://tess.elixir-europe.org/events/metagenomics-1-hp 2016-11-22 00:00:00 UTC 2016-11-23 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • R Programming Foundations for Life Scientists, 2 hp

    28 November - 2 December 2016

    Uppsala

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp 2016-11-28 09:00:00 UTC 2016-12-02 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • UPPMAX Introductory Course Winter 2017

    9 - 12 January 2017

    Uppsala

    Elixir node event
    UPPMAX Introductory Course Winter 2017 https://tess.elixir-europe.org/events/uppmax-introductory-course-winter-2017 2017-01-09 09:00:00 UTC 2017-01-12 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to Bioinformatics using NGS data, 2 hp

    23 - 27 January 2017

    Uppsala

    Elixir node event
    Introduction to Bioinformatics using NGS data, 2 hp https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-2-hp-3f1a2da9-beaf-4338-bd2c-492265472220 2017-01-23 09:00:00 UTC 2017-01-27 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Python Programming with Application to Bioinformatics, 2 hp

    6 - 10 February 2017

    Uppsala

    Elixir node event
    Python Programming with Application to Bioinformatics, 2 hp https://tess.elixir-europe.org/events/python-programming-with-application-to-bioinformatics-2-hp 2017-02-06 09:00:00 UTC 2017-02-10 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • RNA-seq, 1 hp

    13 - 15 March 2017

    Uppsala

    Elixir node event
    RNA-seq, 1 hp https://tess.elixir-europe.org/events/rna-seq-1-hp 2017-03-13 09:00:00 UTC 2017-03-15 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • R Programming Foundations for Life Scientists, 2 hp

    27 - 31 March 2017

    Uppsala

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp-f3c02264-0573-45bf-9d3e-4067bfa91d1d 2017-03-27 09:00:00 UTC 2017-03-31 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to Genome Annotation, 1 hp

    9 - 11 May 2017

    Uppsala

    Elixir node event
    Introduction to Genome Annotation, 1 hp https://tess.elixir-europe.org/events/introduction-to-genome-annotation-1-hp Course content Genome annotation is the process in which loci of interest in a genome are identified, both in structure and function. The structural part includes identifying the number and size of exons and introns, size of UTRs, and number of isoforms. The functional annotation, in turn, focuses on inferring the biological role of different transcripts. The course is aimed at researchers that are involved in on-going or upcoming genome projects and wish to deepen their understanding of the various forms of data and computational steps required to achieve a comprehensive annotation. The focus of the course will be on non-model eukaryote organisms, and in particular the structural annotation of protein coding genes. We will use de novo gene finders, protein alignments and RNA-seq data to infer the structure of genes, and show how to combine these different lines of evidence to get the most stable and informative annotation. We will also infer the function of these genes using similarity to known proteins as well as the presence of functional domains. Topics covered will include: · Project planning · Gene finders · Protein alignment · RNA-seq assembly · Combined structural annotation using Maker2 · Functional annotation · Procaryote annotation · The NBIS annotation service 2017-05-09 09:00:00 UTC 2017-05-11 00:00:00 UTC Uppsala Uppsala [] jessica.lindvall@scilifelab.se [] [] workshops_and_courses [] []
  • GATK Best Practices for Variant Discovery

    17 - 19 July 2017

    Edinburgh, United Kingdom

    Elixir node event
    GATK Best Practices for Variant Discovery https://tess.elixir-europe.org/events/gatk-best-practices-for-variant-discovery This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq-specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. 2017-07-17 09:00:00 UTC 2017-07-19 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics Genomics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] Variant discoveryGenomicsBioinformatics
  • UPPMAX Introductory Course Summer 2017

    21 - 24 August 2017

    Uppsala

    Elixir node event
    UPPMAX Introductory Course Summer 2017 https://tess.elixir-europe.org/events/uppmax-introductory-course-summer-2017 2017-08-21 09:00:00 UTC 2017-08-24 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Advanced Molecular Technology and Instrumentation for Proteome Analyses, 3 hp

    28 August - 8 September 2017

    Uppsala

    Elixir node event
    Advanced Molecular Technology and Instrumentation for Proteome Analyses, 3 hp https://tess.elixir-europe.org/events/advanced-molecular-technology-and-instrumentation-for-proteome-analyses-3-hp 2017-08-28 09:00:00 UTC 2017-09-08 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Cancelled: Perl Programming with Application to Bioinformatics, 2 hp

    11 - 15 September 2017

    Uppsala

    Elixir node event
    Cancelled: Perl Programming with Application to Bioinformatics, 2 hp https://tess.elixir-europe.org/events/perl-programming-with-application-to-bioinformatics-2-hp THE PERL COURSE IS CANCELLED DUE TO FEW APPLICANTS! Course content Perl is the ideal programming language for biological data analysis. The course is for students with little or no prior knowledge in perl. Familiarity in using a Unix command line (e.g. Mac OSX or Linux) is a requirement for the course. It is aimed at students who need computational skills to handle large datasets. The course will follow the book “Learning Perl”. It will consist of lectures to introduce all topics and computer assignments to be completed individually after each lecture. The course will also include practical computational exercises. To complete the course, students are expected to complete a short project, either from their own work or pre-defined. Topics covered will include: introduction to command line and writing perl scripts handling scalar data, control structures lists/arrays subroutines input/output regular expressions and pattern matching conditional operators strings and sorting loops hashes introduction to modules such as bioperl By the end of the course, students should: understand and be able to implement all fundamental elements of Perl programming be able to write programs to perform common bioinformatics tasks be able to understand and debug Perl programs be competent using a Unix environment Entry requirements To get the maximum benefit from the course we would like you to Be able to bring your own Mac or Linux laptop for the practical computational exercises. If you don’t have a Mac or Linux computer to bring please contact us at education@scilifelab.uu.se before you apply. Be familiar in using the Unix command line (Mac OSX or Linux). We will not teach Unix in detail in the course and you will have considerable trouble to follow the practical computational exercises if you are not reasonably used to work in a Unix. Other course are available at SciLifeLab that introduce the basics in Unix. It is strongly recommended that students read the course book “Learning Perl, 6th Edition” (Schwartz et al.) before attending the course. Selection criteria Selection criteria include correct entry requirements, motivation to attend the course as well as gender and geographical balance. Important dates Application open: May 8 https://secure.webforum.com/form/scilifelab/form.asp?sid=24839678 Application deadline: August 6 Confirmation to accepted students: August 14 Responsible teacher: Matthew Webster 2017-09-11 09:00:00 UTC 2017-09-15 00:00:00 UTC Uppsala Uppsala [] jessica.lindvall@scilifelab.se [] [] workshops_and_courses [] []
  • Workshop on quantitative automated analysis of microscopy data using CellProfiler

    15 September 2017

    Uppsala

    Elixir node event
    Workshop on quantitative automated analysis of microscopy data using CellProfiler https://tess.elixir-europe.org/events/workshop-on-quantitative-automated-analysis-of-microscopy-data-using-cellprofiler 2017-09-15 09:00:00 UTC 2017-09-15 15:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to Bioinformatics using NGS data, 2 hp

    25 - 29 September 2017

    Lund

    Elixir node event
    Introduction to Bioinformatics using NGS data, 2 hp https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-2-hp-932eaf07-0730-4863-94ef-382375132e03 2017-09-25 09:00:00 UTC 2017-09-29 00:00:00 UTC Lund Lund [] [] [] workshops_and_courses [] []
  • Single cell RNA sequencing data analysis, 1 hp

    2 - 4 October 2017

    Uppsala

    Elixir node event
    Single cell RNA sequencing data analysis, 1 hp https://tess.elixir-europe.org/events/single-cell-rna-sequencing-data-analysis-1-hp 2017-10-02 09:00:00 UTC 2017-10-04 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Python Programming with Application to Bioinformatics, 2 ECTS

    9 - 13 October 2017

    Uppsala

    Elixir node event
    Python Programming with Application to Bioinformatics, 2 ECTS https://tess.elixir-europe.org/events/python-programming-with-application-to-bioinformatics-2-ects 2017-10-09 09:00:00 UTC 2017-10-13 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • R Programming Foundations for Life Scientists, 2 hp

    23 - 27 October 2017

    Uppsala

    Elixir node event
    R Programming Foundations for Life Scientists, 2 hp https://tess.elixir-europe.org/events/r-programming-foundations-for-life-scientists-2-hp-25fc97a4-bfc9-4a3a-8754-4a6bbc3acae7 2017-10-23 09:00:00 UTC 2017-10-27 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Single cell genomics analysis of microbes – a practical and theoretical workshop, 1 hp

    25 - 27 October 2017

    Uppsala

    Elixir node event
    Single cell genomics analysis of microbes – a practical and theoretical workshop, 1 hp https://tess.elixir-europe.org/events/single-cell-genomics-analysis-of-microbes-a-practical-and-theoretical-workshop-1-hp 2017-10-25 09:00:00 UTC 2017-10-27 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • RNA-seq, 1 hp

    6 - 8 November 2017

    Uppsala

    Elixir node event
    RNA-seq, 1 hp https://tess.elixir-europe.org/events/rna-seq-1-hp-24956c0e-fe33-464a-b843-e11c53df3089 2017-11-06 09:00:00 UTC 2017-11-08 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • De novo Genome Assembly, 1 hp

    15 - 17 November 2017

    Uppsala

    Elixir node event
    De novo Genome Assembly, 1 hp https://tess.elixir-europe.org/events/de-novo-genome-assembly-1-hp 2017-11-15 09:00:00 UTC 2017-11-17 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Metagenomics, 1 hp

    20 - 22 November 2017

    Uppsala

    Elixir node event
    Metagenomics, 1 hp https://tess.elixir-europe.org/events/metagenomics-1-hp-1fc2ef86-e038-4dd6-961d-a306aaa10294 2017-11-20 09:00:00 UTC 2017-11-22 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics
  • Introduction to Bioinformatics using NGS data, 2 hp

    27 November - 1 December 2017

    Uppsala

    Elixir node event
    Introduction to Bioinformatics using NGS data, 2 hp https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-2-hp-8c956b13-e425-446e-b44e-77911c8ff340 2017-11-27 09:00:00 UTC 2017-12-01 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • UPPMAX Introductory Course Winter 2018

    15 - 18 January 2018

    Uppsala

    Elixir node event
    UPPMAX Introductory Course Winter 2018 https://tess.elixir-europe.org/events/uppmax-introductory-course-winter-2018 2018-01-15 09:00:00 UTC 2018-01-18 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to Bioinformatics using NGS data, 2 hp

    12 - 16 February 2018

    Uppsala

    Elixir node event
    Introduction to Bioinformatics using NGS data, 2 hp https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-2-hp-30eb5200-cfeb-49a4-9131-67baf79ac1e5 2018-02-12 09:00:00 UTC 2018-02-16 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to Bioinformatics using NGS data, 2 hp

    12 - 16 February 2018

    Uppsala

    Elixir node event
    Introduction to Bioinformatics using NGS data, 2 hp https://tess.elixir-europe.org/events/introduction-to-bioinformatics-using-ngs-data-2-hp-ca459312-99ff-4ba5-9c92-1ea8d190ec87 2018-02-12 09:00:00 UTC 2018-02-16 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Introduction to Python for Biologists

    19 - 23 February 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Python for Biologists https://tess.elixir-europe.org/events/introduction-to-python-for-biologists-bcd1d1d1-24fc-47b6-b586-fc239d27888e Python is a dynamic, readable language that is a popular platform for all types of bioinformatics work, from simple one-off scripts to large, complex software projects. This workshop is aimed at complete beginners and assumes no prior programming experience. It gives an overview of the language with an emphasis on practical problem-solving, using examples and exercises drawn from various aspects of bioinformatics work. The workshop is structured so that the parts of the language most useful for bioinformatics are introduced as early as possible, and that students can start writing plausibly-useful programs after the first few sessions. After completing the workshop, students should be in a position to (1) apply the skills they have learned to tackling problems in their own research and (2) continue their Python education in a self-directed way. 2018-02-19 09:00:00 UTC 2018-02-23 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsProgrammingPython
  • Single cell genomics – a practical and theoretical workshop

    13 - 15 March 2018

    Uppsala

    Elixir node event
    Single cell genomics – a practical and theoretical workshop https://tess.elixir-europe.org/events/single-cell-genomics-a-practical-and-theoretical-workshop 2018-03-13 09:00:00 UTC 2018-03-15 00:00:00 UTC Uppsala Uppsala [] [] [] workshops_and_courses [] []
  • Data Manipulation and Visualisation with Python

    9 - 13 April 2018

    Edinburgh, United Kingdom

    Elixir node event
    Data Manipulation and Visualisation with Python https://tess.elixir-europe.org/events/data-manipulation-and-visualisation-with-python One of the strengths of the Python language is the availability of mature, high-quality libraries for working with scientific data. Integration between the most popular libraries has lead to the concept of a "scientific Python stack": a collection of packages which are designed to work well together. In this workshop we will see how to leverage these libraries to efficiently work with and visualise large volumes of data. 2018-04-09 09:00:00 UTC 2018-04-13 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsProgrammingPython
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