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City: Bogota  or Copenhagen  or Edinburgh  or Washington  or Melbourne 

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Keywords: Variant discovery  or Shell script 

  • GATK Best Practices for Variant Discovery

    17 - 19 July 2017

    Edinburgh, United Kingdom

    Elixir node event
    GATK Best Practices for Variant Discovery https://tess.elixir-europe.org/events/gatk-best-practices-for-variant-discovery This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq-specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. 2017-07-17 09:00:00 UTC 2017-07-19 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics Genomics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] Variant discoveryGenomicsBioinformatics
  • Advanced Linux and Shell Scripting for biologists

    31 October 2019

    Melbourne, Australia

    Advanced Linux and Shell Scripting for biologists https://tess.elixir-europe.org/events/advanced-linux-and-shell-scripting-for-biologists-ab563b04-f224-494d-a7cd-283d078a1f92 2019-10-31 01:00:00 UTC 2019-10-31 17:00:00 UTC Melbourne Bioinformatics Room 355 Arts West North Wing Professors Walk, Melbourne, Australia Room 355 Arts West North Wing Professors Walk Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticslinuxShell script
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