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46 events found

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Keywords: Linux  or bioinformatics 

  • Linux for Genomics

    20 January 2017

    Edinburgh, United Kingdom

    Linux for Genomics https://tess.elixir-europe.org/events/linux-for-genomics-04835f08-3c91-4dc6-be5c-9ccb661c495e Genomic studies produce vast amounts of data, usually in the form of very large text files. Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician’s toolkit. The Linux command-line enables one to view, filter and manipulate large text files that are difficult or impossible to handle with applications like Word or Excel, write pipelines to perform certain tasks, and run bioinformatics software for which no web interface is available. In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). 2017-01-20 00:00:00 UTC 2017-01-20 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsLinux
  • Introduction to Linux and Workflows for Biologists

    24 - 28 April 2017

    Edinburgh, United Kingdom

    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2017-04-24 00:00:00 UTC 2017-04-28 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • Sequences and genomic features in R

    4 September 2017

    Melbourne, Australia

    Sequences and genomic features in R https://tess.elixir-europe.org/events/sequences-and-genomic-features-in-r This course introduces Bioconductor, a comprehensive collection of R packages related to bioinformatics. We will demonstrate the Bioconductor way of doing things and how to work with biological data types, and equip you to confidently approach whichever specific Bioconductor packages you need. Pre-requisite To attend this class, you must have attended our introductory R course or be reasonably familiar with the R language. 2017-09-04 14:00:00 UTC 2017-09-04 16:00:00 UTC Monash Bioinformatics Platform Melbourne, Melbourne, Australia Melbourne Melbourne Australia Bioinformatics Monash University Dr Sonika Tyagi, bioinformatics.platform@monash.edu [] PhD studentsPost-docsBioinformaticiansResearchers workshops_and_courses registration_of_interest R-programmingbioinformaticsBioconductor
  • Advanced Scientific Programming in Python

    14 - 21 January 2018

    Melbourne, Australia

    Advanced Scientific Programming in Python https://tess.elixir-europe.org/events/advanced-scientific-programming-in-python Applications are now open for this international school being held in the Southern Hemisphere for the first time. The Advanced Scientific Programming in Python (ASPP) summer school has had 10 extremely successful iterations in Europe (https://python.g-node.org/archives). Now, thanks to funding from the International Neuroinformatics Coordinating Facility (INCF), Melbourne is hosting the first ASPP workshop focussed on the Asia Pacific region. 2018-01-14 17:51:00 UTC 2018-01-21 17:51:00 UTC Juan Nunez-Iglesias, Melbourne Bioinformatics University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Imaging Neurobiology Informatics University of Melbourne aspp@melbournebioinformatics.org.au INCF Life Science Researcherspost-docsPhD studentsMaster studentsbioinformaticians workshops_and_courses [] Pythonneurosciencesbioinformatics
  • Introduction to Linux and Workflows for Biologists

    14 - 18 May 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists-866df86c-a827-433d-9445-af7726bcf5a1 Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2018-05-14 09:00:00 UTC 2018-05-18 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Workflows Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • Genome Assembly using Galaxy Australia (EMBL-ABR: Melbourne Bioinformatics Node)

    22 August 2018

    Melbourne, Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: Melbourne Bioinformatics Node) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia-embl-abr-melbourne-bioinformatics-node 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy
  • Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Clayton)

    22 August 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Clayton) https://tess.elixir-europe.org/events/intro-to-galaxy-australia-genome-assembly-monash-bioinformatics-clayton 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy
  • Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Hudson)

    22 August 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Hudson) https://tess.elixir-europe.org/events/intro-to-galaxy-australia-genome-assembly-monash-bioinformatics-hudson 2018-08-22 13:00:00 UTC 2018-08-22 14:00:00 UTC EMBL-ABR Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton, Melbourne, Australia Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy
  • Statistical Literacy and Ethical Neuroscience

    23 August 2018

    Melbourne, Australia

    Statistical Literacy and Ethical Neuroscience https://tess.elixir-europe.org/events/supplementary-workshop-statistical-literacy-and-ethical-neuroscience 2018-08-23 14:30:00 UTC 2018-08-23 17:00:00 UTC EMBL-ABR Level 5 Seminar Room, Kenneth Myer Building, University of Melbourne, Melbourne, Australia Level 5 Seminar Room, Kenneth Myer Building, University of Melbourne Melbourne Australia 3053 Bioinformatics University of Melbourne [] [] [] [] neurosciencebioinformatics Statistics
  • Introduction to Galaxy Australia - Variant Detection (Monash - Clayton)

    12 September 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Variant Detection (Monash - Clayton) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-variant-detection-monash-clayton 2018-09-12 13:00:00 UTC 2018-09-12 16:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Clayton, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformatics
  • Introduction to Galaxy Australia - Variant Detection (Melbourne Bioinformatics)

    12 September 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Variant Detection (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/intro-to-galaxy-australia-variant-detection-melbourne-bioinformatics 2018-09-12 13:00:00 UTC 2018-09-12 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformatics
  • Introduction to Galaxy Australia - Variant Detection (Monash-Hudson)

    12 September 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Variant Detection (Monash-Hudson) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-variant-detection-monash-hudson 2018-09-12 13:00:00 UTC 2018-09-12 16:00:00 UTC EMBL-ABR Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton, Melbourne, Australia Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformatics
  • Linux for Genomics

    1 October 2018

    Edinburgh, United Kingdom

    Elixir node event
    Linux for Genomics https://tess.elixir-europe.org/events/linux-for-genomics-4e98de3e-0102-46ab-9720-22f1122fd31d Genomic studies produce vast amounts of data, usually in the form of very large text files. Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician’s toolkit. The Linux command-line enables one to view, filter and manipulate large text files that are difficult or impossible to handle with applications like Word or Excel, write pipelines to perform certain tasks, and run bioinformatics software for which no web interface is available. In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). 2018-10-01 09:00:00 UTC 2018-10-01 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics Bioinformatics Edinburgh Genomics Donald Dunbar - donald.dunbar@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsLinux
  • Introduction to High Performance Computing

    15 October 2018

    Melbourne, Australia

    Introduction to High Performance Computing https://tess.elixir-europe.org/events/introduction-to-high-performance-computing-3be3f197-c7f9-45d0-8728-dea417d57580 2018-10-15 02:30:00 UTC 2018-10-15 05:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsHPC
  • Introduction to Unix

    15 October 2018

    Melbourne, Australia

    Introduction to Unix https://tess.elixir-europe.org/events/introduction-to-unix-a2c1f5ab-fc0b-420c-9c91-82798005ff20 2018-10-15 09:30:00 UTC 2018-10-15 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsUnix
  • Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-melbourne-bioinformatics 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Clayton)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Clayton) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-clayton 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Hudson)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Hudson) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-hudson 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton, Melbourne, Australia Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Containerised Bioinformatics: Docker and other tools for reproducible analysis

    29 October 2018

    Melbourne, Australia

    Containerised Bioinformatics: Docker and other tools for reproducible analysis https://tess.elixir-europe.org/events/containerised-bioinformatics-docker-and-other-tools-for-reproducible-analysis-8ea6f943-f007-425b-8c78-2216438b214a 2018-10-29 01:30:00 UTC 2018-10-29 04:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsDocker
  • Introduction to EBI tools

    29 October 2018

    Melbourne, Australia

    Introduction to EBI tools https://tess.elixir-europe.org/events/introduction-to-ebi-tools-163766d3-3d00-4d3b-81c7-d556baa8804f 2018-10-29 09:30:00 UTC 2018-10-29 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformatics
  • Introduction to long-read genome assembly

    31 October 2018

    Melbourne, Australia

    Introduction to long-read genome assembly https://tess.elixir-europe.org/events/introduction-to-long-read-genome-assembly-14f2b54a-287c-4120-ab24-19fee823d469 2018-10-31 09:30:00 UTC 2018-10-31 13:00:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformatics
  • Introduction to Galaxy Australia: Metagenomics (Melbourne Bioinformatics)

    14 November 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: Metagenomics (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-metagenomics-melbourne-bioinformatics 2018-11-14 12:00:00 UTC 2018-11-14 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsGalaxymetagenomics
  • Introduction to Galaxy Australia: Metagenomics (Monash - Clayton)

    14 November 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: Metagenomics (Monash - Clayton) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-metagenomics-monash-clayton 2018-11-14 12:00:00 UTC 2018-11-14 16:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Clayton, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxymetagenomics
  • Introduction to Galaxy Australia: Metagenomics (Monash - Hudson)

    14 November 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: Metagenomics (Monash - Hudson) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-metagenomics-monash-hudson 2018-11-14 12:00:00 UTC 2018-11-14 16:00:00 UTC EMBL-ABR Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton, Melbourne, Australia Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxymetagenomics
  • Introduction to long-read genome assembly

    5 April 2019

    Melbourne, Australia

    Introduction to long-read genome assembly https://tess.elixir-europe.org/events/introduction-to-long-read-genome-assembly-c43a1031-7b9c-4893-8b28-7844d2bc1741 2019-04-05 09:00:00 UTC 2019-04-05 17:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxyGenome Assembly
  • Data tidying with Python and Pandas

    20 May 2019

    Melbourne, Australia

    Data tidying with Python and Pandas https://tess.elixir-europe.org/events/data-tidying-with-python-and-pandas 2019-05-20 09:00:00 UTC 2019-05-20 16:30:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxypython
  • Data visualisation with Python

    22 May 2019

    Melbourne, Australia

    Data visualisation with Python https://tess.elixir-europe.org/events/data-visualisation-with-python 2019-05-22 09:00:00 UTC 2019-05-22 16:30:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxypython
  • Common Workflow Language for Bioinformatics

    23 May 2019

    Melbourne, Australia

    Common Workflow Language for Bioinformatics https://tess.elixir-europe.org/events/common-workflow-language-for-bioinformatics 2019-05-23 09:00:00 UTC 2019-05-23 12:30:00 UTC Melbourne Bioinformatics 187 Grattan St, Ground Floor , Melbourne, Australia 187 Grattan St, Ground Floor Melbourne Melbourne City Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsCWL
  • Introduction to Linux and HPC for biologists

    27 May 2019

    Melbourne, Australia

    Introduction to Linux and HPC for biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-hpc-for-biologists 2019-05-27 09:30:00 UTC 2019-05-27 16:30:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Melbourne City Australia Bioinformatics University of Melbourne [] [] [] [] HPCbioinformaticslinux
  • Advanced Linux and Shell Scripting for biologists

    28 May 2019

    Melbourne, Australia

    Advanced Linux and Shell Scripting for biologists https://tess.elixir-europe.org/events/advanced-linux-and-shell-scripting-for-biologists 2019-05-28 09:00:00 UTC 2019-05-28 17:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Melbourne City Australia 3053 Bioinformatics [] [] [] [] [] Linuxbioinformatics

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