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18 events found

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Keywords: Linux  or Galaxy 

  • Linux for Genomics

    20 January 2017

    Edinburgh, United Kingdom

    Linux for Genomics https://tess.elixir-europe.org/events/linux-for-genomics-04835f08-3c91-4dc6-be5c-9ccb661c495e Genomic studies produce vast amounts of data, usually in the form of very large text files. Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician’s toolkit. The Linux command-line enables one to view, filter and manipulate large text files that are difficult or impossible to handle with applications like Word or Excel, write pipelines to perform certain tasks, and run bioinformatics software for which no web interface is available. In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). 2017-01-20 00:00:00 UTC 2017-01-20 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsLinux
  • Introduction to Linux and Workflows for Biologists

    24 - 28 April 2017

    Edinburgh, United Kingdom

    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2017-04-24 00:00:00 UTC 2017-04-28 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • Introduction to Linux and Workflows for Biologists

    14 - 18 May 2018

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Linux and Workflows for Biologists https://tess.elixir-europe.org/events/introduction-to-linux-and-workflows-for-biologists-866df86c-a827-433d-9445-af7726bcf5a1 Most high-throughput bioinformatics work these days takes place on the Linux command line. The programs which do the majority of the computational heavy lifting — genome assemblers, read mappers, and annotation tools — are designed to work best when used with a command-line interface. Because the command line can be an intimidating environment, many biologists learn the bare minimum needed to get their analysis tools working. This means that they miss out on the power of Linux to customise their environment and automate many parts of the bioinformatics workflow. This course will introduce the Linux command line environment from scratch and teach students how to make the most of its tools to achieve a high level of productivity when working with biological data. 2018-05-14 09:00:00 UTC 2018-05-18 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Workflows Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsLinuxWorkflows
  • Genome Assembly using Galaxy Australia (EMBL-ABR: Melbourne Bioinformatics Node)

    22 August 2018

    Melbourne, Australia

    Genome Assembly using Galaxy Australia (EMBL-ABR: Melbourne Bioinformatics Node) https://tess.elixir-europe.org/events/genome-assembly-using-galaxy-australia-embl-abr-melbourne-bioinformatics-node 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy
  • Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Clayton)

    22 August 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Clayton) https://tess.elixir-europe.org/events/intro-to-galaxy-australia-genome-assembly-monash-bioinformatics-clayton 2018-08-22 13:00:00 UTC 2018-08-22 16:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy
  • Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Hudson)

    22 August 2018

    Melbourne, Australia

    Introduction to Galaxy Australia - Genome Assembly (Monash Bioinformatics-Hudson) https://tess.elixir-europe.org/events/intro-to-galaxy-australia-genome-assembly-monash-bioinformatics-hudson 2018-08-22 13:00:00 UTC 2018-08-22 14:00:00 UTC EMBL-ABR Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton, Melbourne, Australia Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy
  • Linux for Genomics

    1 October 2018

    Edinburgh, United Kingdom

    Elixir node event
    Linux for Genomics https://tess.elixir-europe.org/events/linux-for-genomics-4e98de3e-0102-46ab-9720-22f1122fd31d Genomic studies produce vast amounts of data, usually in the form of very large text files. Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician’s toolkit. The Linux command-line enables one to view, filter and manipulate large text files that are difficult or impossible to handle with applications like Word or Excel, write pipelines to perform certain tasks, and run bioinformatics software for which no web interface is available. In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). 2018-10-01 09:00:00 UTC 2018-10-01 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics Bioinformatics Edinburgh Genomics Donald Dunbar - donald.dunbar@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsLinux
  • Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-melbourne-bioinformatics 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne BioinformaticsUniversity of Melbourne [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Clayton)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Clayton) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-clayton 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: RNA-seq (Monash - Hudson)

    23 October 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: RNA-seq (Monash - Hudson) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-rna-seq-monash-hudson 2018-10-23 01:00:00 UTC 2018-10-23 17:00:00 UTC EMBL-ABR Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton, Melbourne, Australia Level 4, Large Meeting Room Translational Research Facility Monash Health Translation Precinct Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxy RNA-Seq
  • Introduction to Galaxy Australia: Metagenomics (Melbourne Bioinformatics)

    14 November 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: Metagenomics (Melbourne Bioinformatics) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-metagenomics-melbourne-bioinformatics 2018-11-14 12:00:00 UTC 2018-11-14 16:00:00 UTC EMBL-ABR Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton, Melbourne, Australia Melbourne Bioinformatics Boardroom, 187 Grattan St, University of Melbourne, Carlton Melbourne Australia 3053 Bioinformatics Melbourne Bioinformatics [] [] [] [] bioinformaticsGalaxymetagenomics
  • Introduction to Galaxy Australia: Metagenomics (Monash - Clayton)

    14 November 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: Metagenomics (Monash - Clayton) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-metagenomics-monash-clayton 2018-11-14 12:00:00 UTC 2018-11-14 16:00:00 UTC EMBL-ABR S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Clayton, Melbourne, Australia S322, Menzies 20 Chancellors Walk, Monash University, Clayton Campus, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxymetagenomics
  • Introduction to Galaxy Australia: Metagenomics (Monash - Hudson)

    14 November 2018

    Melbourne, Australia

    Introduction to Galaxy Australia: Metagenomics (Monash - Hudson) https://tess.elixir-europe.org/events/introduction-to-galaxy-australia-metagenomics-monash-hudson 2018-11-14 12:00:00 UTC 2018-11-14 16:00:00 UTC EMBL-ABR Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton, Melbourne, Australia Level 4, Large Meeting Room, Translational Research Facility, Monash Health Translation Precinct, Clayton Melbourne Australia 3169 Bioinformatics Monash University [] [] [] [] bioinformaticsGalaxymetagenomics
  • Introduction to long-read genome assembly

    5 April 2019

    Melbourne, Australia

    Introduction to long-read genome assembly https://tess.elixir-europe.org/events/introduction-to-long-read-genome-assembly-c43a1031-7b9c-4893-8b28-7844d2bc1741 2019-04-05 09:00:00 UTC 2019-04-05 17:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxyGenome Assembly
  • Data tidying with Python and Pandas

    20 May 2019

    Melbourne, Australia

    Data tidying with Python and Pandas https://tess.elixir-europe.org/events/data-tidying-with-python-and-pandas 2019-05-20 09:00:00 UTC 2019-05-20 16:30:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxypython
  • Data visualisation with Python

    22 May 2019

    Melbourne, Australia

    Data visualisation with Python https://tess.elixir-europe.org/events/data-visualisation-with-python 2019-05-22 09:00:00 UTC 2019-05-22 16:30:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxypython
  • Best Practices in Bioinformatics Software Development

    5 June 2019

    Melbourne, Australia

    Best Practices in Bioinformatics Software Development https://tess.elixir-europe.org/events/best-practices-in-bioinformatics-software-development 2019-06-05 09:00:00 UTC 2019-06-05 17:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Melbourne, Australia 187 Grattan St, 187, Grattan Street Melbourne Australia Bioinformatics University of Melbourne [] [] [] [] bioinformaticsGalaxy
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    4 October 2019

    Melbourne, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl-39b2ddbd-bddb-44c7-bbec-b317ebdb7224 2019-10-04 01:00:00 UTC 2019-10-04 04:00:00 UTC Melbourne Bioinformatics Arts West North Wing Room 355 Professors Walk University of Melbourne Carlton, VIC 3053, Melbourne, Australia Arts West North Wing Room 355 Professors Walk University of Melbourne Carlton, VIC 3053 Melbourne Australia 3053 RNA-Seq Bioinformatics University of Melbourne [] [] [] [] bioinformaticsRNA-SeqGalaxy

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