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15 events found

Scientific topics: Genomics 

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City: Bogota  or Copenhagen  or Edinburgh  or Palm Springs  or Montreal  or Nijmegen  or Baltimore 

  • Genomic resequencing

    4 - 5 April 2012

    Nijmegen, Netherlands

    Genomic resequencing https://tess.elixir-europe.org/events/genomic-resequencing 2012-04-04 23:00:00 UTC 2012-04-05 23:00:00 UTC UMC Radboud, Nijmegen, Netherlands UMC Radboud Nijmegen Netherlands Genomics Bioinformatics [] [] [] workshops_and_courses [] Diagnosis
  • Genomics in Metabolism

    3 - 6 November 2013

    Copenhagen, Denmark

    Genomics in Metabolism https://tess.elixir-europe.org/events/genomics-in-metabolism 2013-11-03 00:00:00 UTC 2013-11-06 00:00:00 UTC Novo Nordisk Foundation Copenhagen, Denmark Copenhagen Denmark Metabolomics Genomics Epigenomics [] [] [] meetings_and_conferences [] []
  • INTRODUCTION TO RAD-SEQ DATA ANALYSIS

    7 - 8 May 2015

    Edinburgh, United Kingdom

    INTRODUCTION TO RAD-SEQ DATA ANALYSIS https://tess.elixir-europe.org/events/introduction-to-rad-seq-data-analysis 2015-05-07 01:00:00 UTC 2015-05-08 01:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Genomics [] [] [] meetings_and_conferences [] []
  • INTRODUCTION TO RAD-SEQ DATA ANALYSIS

    7 - 8 May 2015

    Edinburgh, United Kingdom

    INTRODUCTION TO RAD-SEQ DATA ANALYSIS https://tess.elixir-europe.org/events/introduction-to-rad-seq-data-analysis-caa7915c-5e3f-4850-a69a-8c6de5af3862 2015-05-07 01:00:00 UTC 2015-05-08 01:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Genomics [] [] [] meetings_and_conferences [] []
  • LINUX FOR GENOMICS

    22 May 2015

    Edinburgh, United Kingdom

    LINUX FOR GENOMICS https://tess.elixir-europe.org/events/linux-for-genomics-aec21f71-54be-4e71-9574-bac27cadf89d 2015-05-22 01:00:00 UTC 2015-05-22 01:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Genomics [] [] [] meetings_and_conferences [] []
  • INTRODUCTION TO RNA-SEQ DATA ANALYSIS

    28 - 29 May 2015

    Edinburgh, United Kingdom

    INTRODUCTION TO RNA-SEQ DATA ANALYSIS https://tess.elixir-europe.org/events/introduction-to-rna-seq-data-analysis 2015-05-28 01:00:00 UTC 2015-05-29 01:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Genomics [] [] [] meetings_and_conferences [] []
  • INTRODUCTION TO CHIP-SEQ DATA ANALYSIS

    23 - 24 July 2015

    Edinburgh, United Kingdom

    INTRODUCTION TO CHIP-SEQ DATA ANALYSIS https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis 2015-07-23 01:00:00 UTC 2015-07-24 01:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Genomics [] [] [] workshops_and_courses [] []
  • INTRODUCTION TO RNA-SEQ DATA ANALYSIS

    17 - 18 September 2015

    Edinburgh, United Kingdom

    INTRODUCTION TO RNA-SEQ DATA ANALYSIS https://tess.elixir-europe.org/events/introduction-to-rna-seq-data-analysis-1f3a3766-3051-4a52-81b1-e48e4a14f3d4 2015-09-17 01:00:00 UTC 2015-09-18 01:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Genomics [] [] [] workshops_and_courses [] []
  • INTRODUCTION TO RAD-SEQ DATA ANALYSIS

    1 - 2 October 2015

    Edinburgh, United Kingdom

    INTRODUCTION TO RAD-SEQ DATA ANALYSIS https://tess.elixir-europe.org/events/introduction-to-rad-seq-data-analysis-1f6df77b-555f-4acd-bc4d-0dfefafaba64 2015-10-01 01:00:00 UTC 2015-10-02 01:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Genomics [] [] [] workshops_and_courses [] []
  • RECOMB Comparative genomics

    11 - 14 June 2016

    Montreal, Canada

    RECOMB Comparative genomics https://tess.elixir-europe.org/events/recomb-comparative-genomics Despite the remarkable unity of the basic components of the living world (DNA, RNA, the genetic code), we are probably still not aware of the diversity of genome structures nor of the diversity of means genomes use to evolve. Rearrangements, gene transfers, duplications, transposable elements, single nucleotide substitutions, repetitions, insertions, deletions, have been successively discovered and modeled in the XXth century. They are used to document the evolutionary history of life on earth and to understand adaptation processes. 2016-06-11 09:00:00 UTC 2016-06-14 00:00:00 UTC nadia El-mabrouk Institut de Tourisme et d’hôtellerie du Québec, Montreal, Canada Institut de Tourisme et d’hôtellerie du Québec Montreal Canada Genomics [] [] [] workshops_and_courses [] []
  • GATK Best Practices for Variant Discovery

    17 - 19 July 2017

    Edinburgh, United Kingdom

    Elixir node event
    GATK Best Practices for Variant Discovery https://tess.elixir-europe.org/events/gatk-best-practices-for-variant-discovery This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the Best Practices developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq-specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. 2017-07-17 09:00:00 UTC 2017-07-19 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom Bioinformatics Genomics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] Variant discoveryGenomicsBioinformatics
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics
  • Linux for Genomics

    1 October 2018

    Edinburgh, United Kingdom

    Elixir node event
    Linux for Genomics https://tess.elixir-europe.org/events/linux-for-genomics-4e98de3e-0102-46ab-9720-22f1122fd31d Genomic studies produce vast amounts of data, usually in the form of very large text files. Linux is particularly suited to working with such files, and is therefore arguably one of the most important tools in a bioinformatician’s toolkit. The Linux command-line enables one to view, filter and manipulate large text files that are difficult or impossible to handle with applications like Word or Excel, write pipelines to perform certain tasks, and run bioinformatics software for which no web interface is available. In this workshop we will first cover the most used Linux commands, followed by a short introduction to several popular command-line tools that were especially developed for genomics as well as file formats commonly used in genomics (BED, FASTA, FASTQ, GFF/GTF, SAM/BAM, VCF). 2018-10-01 09:00:00 UTC 2018-10-01 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics Bioinformatics Edinburgh Genomics Donald Dunbar - donald.dunbar@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsLinux
  • Introduction to Python for Biologists

    8 - 12 July 2019

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to Python for Biologists https://tess.elixir-europe.org/events/introduction-to-python-for-biologists-d98f6dfb-45c5-4377-bbe9-9e8d30ed086d Python is a dynamic, readable language that is a popular platform for all types of bioinformatics work, from simple one-off scripts to large, complex software projects. This workshop is aimed at complete beginners and assumes no prior programming experience. It gives an overview of the language with an emphasis on practical problem-solving, using examples and exercises drawn from various aspects of bioinformatics work. The workshop is structured so that the parts of the language most useful for bioinformatics are introduced as early as possible, and that students can start writing plausibly-useful programs after the first few sessions. After completing the workshop, students should be in a position to (1) apply the skills they have learned to tackling problems in their own research and (2) continue their Python education in a self-directed way. 2019-07-08 09:00:00 UTC 2019-07-12 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics Bioinformatics Edinburgh Genomics Training Team - edge-training@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsPython
  • Introduction to RNA-seq Data Analysis

    5 - 7 August 2019

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to RNA-seq Data Analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-data-analysis-5989e86e-a408-481d-b3c7-5a1413b0e4a6 RNA sequencing (RNA-seq) is quickly becoming the method of choice for transcriptome profiling. Nevertheless, it is a non-trivial task to transform the vast amount of data obtained with high-throughput sequencers into useful information. Thus, RNA-seq data analysis is still a major bottleneck for most researchers in this field. The ability of correctly interpreting RNA-seq results, as well as knowledge on the intrinsic properties of these data, are essential to avoid incorrect experimental designs and the application of inappropriate analysis methodologies. The aim of this workshop is to familiarise researchers with RNA-seq data and to initiate them in the analysis by providing lectures and practicals on analysis methodologies. In the practicals Illumina-generated sequencing data and various widely used software programs will be used. 2019-08-05 09:00:00 UTC 2019-08-07 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN RNA-Seq Genomics Bioinformatics Edinburgh Genomics Edinburgh Genomics Training Team - edge-training@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsGenomicsRNA-seq
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