Scientific topics: RNA-Seq
Introducing UTAP: User-friendly Transcriptome Analysis Pipeline
9 September 2019
Rehovot, IsraelIntroducing UTAP: User-friendly Transcriptome Analysis Pipeline https://www.weizmann.ac.il/LS_CoreFacilities/bioinformatics-lscf/courses#uw44 https://tess.elixir-europe.org/events/introducing-utap-user-friendly-transcriptome-analysis-pipeline RNA-Seq (including bulk Mars-seq) technology is routinely used to characterize the transcriptome and detect gene expression differences among cell types, genotypes and conditions. In order to enable fast and user-friendly data analysis, we developed an intuitive and scalable transcriptome pipeline: UTAP that executes the full process on Weizmann computer cluster (WEXAC), starting from sequences and ending with a comprehensive report. The workshop includes a lecture regarding the analysis steps UTAP performs and a hands on session to run the pipeline and understand the outputs it produces. Registration is required and will open near the workshop date. First you need to register for the BBCU activities here: http://bip.weizmann.ac.il/activbin/events (click on the LogIn button) and then you need to register for the workshop. (click on the Register button) 2019-09-09 13:30:00 UTC 2019-09-09 16:00:00 UTC Dr. Dena Leshkowitz Feinberg Room B, Rehovot, Israel Feinberg Room B Rehovot Israel Israel RNA-Seq    workshops_and_courses registration_of_interest 
Introduction to RNA-seq Data Analysis
17 - 19 February 2020
Edinburgh, United KingdomIntroduction to RNA-seq Data Analysis https://genomics.ed.ac.uk/services/introduction-rna-seq-data-analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-data-analysis-5989e86e-a408-481d-b3c7-5a1413b0e4a6 RNA sequencing (RNA-seq) is quickly becoming the method of choice for transcriptome profiling. Nevertheless, it is a non-trivial task to transform the vast amount of data obtained with high-throughput sequencers into useful information. Thus, RNA-seq data analysis is still a major bottleneck for most researchers in this field. The ability of correctly interpreting RNA-seq results, as well as knowledge on the intrinsic properties of these data, are essential to avoid incorrect experimental designs and the application of inappropriate analysis methodologies. The aim of this workshop is to familiarise researchers with RNA-seq data and to initiate them in the analysis by providing lectures and practicals on analysis methodologies. In the practicals Illumina-generated sequencing data and various widely used software programs will be used. 2020-02-17 09:00:00 UTC 2020-02-19 17:00:00 UTC Kings Buildings, The University of Edinburgh, Edinburgh, United Kingdom Kings Buildings, The University of Edinburgh Edinburgh United Kingdom EH25 9RG RNA-Seq Genomics Bioinformatics Edinburgh Genomics Edinburgh Genomics Training Team - firstname.lastname@example.org   workshops_and_courses  HDRUK
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