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4 events found

Scientific topics: ChIP-seq  or Biology 

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City: Bogota  or Copenhagen  or Edinburgh  or Palm Springs  or Alberta  or Strasbourg 

  • Advanced Python For Biologists

    25 July - 29 May 2016

    Edinburgh, United Kingdom

    Advanced Python For Biologists https://tess.elixir-europe.org/events/advanced-python-for-biologists-3b007f2f-c334-478c-8b5b-cdbb7a7ce5ee This workshop is aimed at people who already have a basic knowledge of Python and are interested in using the language to tackle larger problems. In it, we will look in detail at the parts of the language which are particularly useful in scientific programming, and at the tools Python offers for making development faster and easier. The course will use examples and exercises drawn from various aspects of bioinformatics work. After completing the workshop, students should be in a position to (1) take advantage of the advanced language features in their own programs and (2) use appropriate tools when developing software programs. 2016-07-25 09:00:00 UTC 2016-05-29 00:00:00 UTC The University of Edinburgh, Edinburgh, United Kingdom The University of Edinburgh Edinburgh United Kingdom EH9 3FD Bioinformatics Software engineering Biology [] [] [] workshops_and_courses [] []
  • SASB 2016

    7 September 2016

    Edinburgh, United Kingdom

    SASB 2016 https://tess.elixir-europe.org/events/sasb-2016 SASB is a one day workshop that aims at promoting discussions and collaborations at the intersection inbetween the specific field of formal methods covering modelling languages and static analysis, and the following fields: (i) systems biology targetting a system-level understanding of biological systems, (ii) synthetic biology targetting functional modifications to naturally occurring systems, (iii) molecular programming and development of engineered biological and chemical systems. The workshop targets biological networks and executable models of biological systems and molecular devices, focusing on their formal specification and static analysis. A special emphasis is given to rule-based or process-algebraic languages that have the advantage of compact representation and provide a robust tool for systems and synthetic biology as well as a good base for molecular programming languages. Since the state space explodes combinatorially with number of possible states of biochemical substances, static analysis allows investigation of important features from a model without its exhaustive execution. In particular, it allows to pre-process molecular programs and optimise their implementation in DNA; ease characterization of the behaviors of a model; abstractions that prevent a full exploration of the potential concrete behaviors; model reductions, that decrease the dimension of a model while preserving important behaviors; characterization of dynamical properties with respect to the topology of the model; etc. All these features empower and strengthen applicability and efficiency of dynamical analysis and verification. 2016-09-07 00:00:00 UTC 2016-09-07 00:00:00 UTC Edinburgh, United Kingdom Edinburgh United Kingdom Biology [] [] [] workshops_and_courses [] []
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    22 - 23 November 2016

    Edinburgh, United Kingdom

    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2016-11-22 00:00:00 UTC 2016-11-23 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom ChIP-seq Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsChIP-seq
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics
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