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13 events found

Scientific topics: ChIP-seq  or Computational biology 

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City: Bogota  or Copenhagen  or Edinburgh  or Ljubljana  or Fribourg  or Melbourne 

  • RNA-Seq using R

    28 September 2015

    Melbourne, Australia

    RNA-Seq using R https://tess.elixir-europe.org/events/rna-seq-using-r The Monash Bioinformatics Platform want to help make introductory bioinformatic approaches part of the research landscape in Biomedicine. To do this, a foundation level of expertise amongst as many researchers as possible is an important step forward. The platform will then be available to facilitate this work as well as develop more advanced bioinformatic projects with our researchers. We are running a two day hands-on workshop with a focus on enabling researchers to be able to analyse RNASeq (next-gen sequencing) data. Day 1, we will begin by teaching an introduction to programming using the R language. Day 2 will focus on using this knowledge to perform bioinformatic data analysis of some RNASeq data. Day one (Programming in R) is optional, for those well-versed in the R programming language, or programming in general. The workshop will be taught in a similar style to Software Carpentry workshops. Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing". Who: The course is aimed at graduate students and other researchers. 2015-09-28 09:00:00 UTC 2015-09-28 00:00:00 UTC Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Computer science Biomedical science Software engineering Computational biology RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • RNASeq using R

    30 November 2015

    Melbourne, Australia

    RNASeq using R https://tess.elixir-europe.org/events/rnaseq-using-r RNA-Seq using R 2015-11-30 09:00:00 UTC 2015-11-30 00:00:00 UTC Monash University Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Computational biology Software engineering RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • EMBL-ABR Training Day: CyVerse

    11 April 2016

    Melbourne, Australia

    EMBL-ABR Training Day: CyVerse https://tess.elixir-europe.org/events/embl-abr-training-day-cyverse Through several hands-on demos and guided exercises, workshop participants will get a comprehensive look at CyVerse tools and services for large-scale data analysis. Use cases will draw on topics in genomics (including RNA-Seq, assembly, annotation, etc.) and lectures on theory will help you to plan, build, and critique your own experiments. 2016-04-11 09:00:00 UTC 2016-04-11 00:00:00 UTC VLSCI - University of Melbourne VLSCI, Melbourne, Australia VLSCI Melbourne Australia Data architecture, analysis and design Computational biology Data management Data submission, annotation and curation [] [] [] workshops_and_courses [] ABRBPABioinformatics
  • RNAseq using R

    1 - 2 June 2016

    Melbourne, Australia

    RNAseq using R https://tess.elixir-europe.org/events/rnaseq-using-r-632bdf76-dd3d-4c41-9e65-b175a2bb37e6 The Monash Bioinformatics Platform want to help make introductory bioinformatic approaches part of the research landscape in Biomedicine. To do this, a foundation level of expertise amongst as many researchers as possible is an important step forward. The platform will then be available to facilitate this work as well as develop more advanced bioinformatic projects with our researchers. We are running a two day hands-on workshop with a focus on enabling researchers to be able to analyse RNASeq (next-gen sequencing) data. Day 1, we will begin by teaching an introduction to programming using the R language. Day 2 will focus on using this knowledge to perform bioinformatic data analysis of some RNASeq data. The workshop will be taught in a similar style to Software Carpentry workshops. Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing". Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop. 2016-06-01 09:00:00 UTC 2016-06-02 00:00:00 UTC Monash University Monash Bioinformatics Platform, Melbourne, Australia Monash Bioinformatics Platform Melbourne Australia Software engineering Computational biology RNA-Seq [] [] [] workshops_and_courses [] ABRBioinformaticsComputationalBiology
  • 2-day Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    2-day Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/2-day-introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. Workshop Outline -Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Monash University, Melbourne, Australia Monash University Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPAIntroduction
  • Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Melbourne, Australia Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPABioinformaticsRNA
  • EMBL-ABR Non-model Organism Annotation and Curation Cycle, Resources & Tools

    24 October 2016

    Melbourne, Australia

    EMBL-ABR Non-model Organism Annotation and Curation Cycle, Resources & Tools https://tess.elixir-europe.org/events/embl-abr-non-model-organism-annotation-and-curation-cycle-resources-tools-14f0432e-559f-46df-8dff-29d80182b193 A part of the data life-cycle series, this workshop would cover existing non-model organism annotation and curation tools. The workshop would have interactive sessions to engage the attendees in a discussion surrounding the practical use of resources and tools for their projects. Towards the end of the workshop, attendees would have a good understanding of non model annotation and curation in terms of needs and use of existing resources. 2016-10-24 09:00:00 UTC 2016-10-24 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data management Computational biology Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR Best Practice workshop: data life-cycle – plants

    25 October 2016

    Melbourne, Australia

    EMBL-ABR Best Practice workshop: data life-cycle – plants https://tess.elixir-europe.org/events/embl-abr-best-practice-workshop-data-life-cycle-plants A part of the data life-cycle series, this workshop would cover best practice data life-cycle for plant researchers. The workshop would provide insights into different phases of data-life cycle. Towards the end of the workshop, attendees would have a good understanding of what is present or missing in terms of open data, Data Commons and FAIR principles for plant research domain in Australia. 2016-10-25 09:00:00 UTC 2016-10-25 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data management Computational biology Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR Best Practice Workshop: data life-cycle – microbes

    27 October 2016

    Melbourne, Australia

    EMBL-ABR Best Practice Workshop: data life-cycle – microbes https://tess.elixir-europe.org/events/embl-abr-non-model-organism-annotation-and-curation-cycle-resources-tools A part of the data life-cycle series, this workshop would cover best practice data life-cycle for microbial researchers. The workshop would provide insights into different phases of data-life cycle. Towards the end of the workshop, attendees would have a good understanding of what is present or missing in terms of open data, Data Commons and FAIR principles for microbiology research domain in Australia. 2016-10-27 09:00:00 UTC 2016-10-27 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Computational biology Data management Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR Best Practice Workshop: Data Life Cycle – Health

    28 October 2016

    Melbourne, Australia

    EMBL-ABR Best Practice Workshop: Data Life Cycle – Health https://tess.elixir-europe.org/events/embl-abr-best-practice-workshop-data-life-cycle-health A part of the data life-cycle series, this workshop would cover best practice data life-cycle for health researchers. The workshop would provide insights into different phases of data-life cycle. Towards the end of the workshop, attendees would have a good understanding of what is present or missing in terms of open data, Data Commons and FAIR principles for health research domain in Australia. 2016-10-28 09:00:00 UTC 2016-10-28 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data management Computational biology Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIlifescienceBioinformatics
  • EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis

    14 - 15 November 2016

    Melbourne, Australia

    EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis https://tess.elixir-europe.org/events/embl-abr-goblet-hands-on-training-rna-seq-data-analysis A one and a half days workshop that covers hands-on introduction to RNA-seq data analysis. The attendees would learn about the theory, tools and file formats involved right from raw RNA sequence to differentially expressed genes. The workshop would have alternating short lectures and hands-on exercises. 2016-11-14 09:00:00 UTC 2016-11-15 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data architecture, analysis and design Data management Computational biology Bioinformatics RNA-Seq [] [] [] meetings_and_conferences [] ABRVLSCIBioinformaticslifescience
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    22 - 23 November 2016

    Edinburgh, United Kingdom

    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2016-11-22 00:00:00 UTC 2016-11-23 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom ChIP-seq Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsChIP-seq
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics
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