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7 events found

Event types: Workshops and courses 

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Scientific topics: ChIP-seq  or Molecular modelling 

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City: Bogota  or Copenhagen  or Edinburgh  or Ljubljana  or Fribourg  or Melbourne 

  • ADVANCED MOLECULAR MODELLING WORKSHOP

    3 - 5 June 2015

    Melbourne, Australia

    ADVANCED MOLECULAR MODELLING WORKSHOP https://tess.elixir-europe.org/events/advanced-molecular-modelling-workshop Advanced Molecular Modelling workshop hosted by VLSCI, RMIT and LIMS gives researchers the opportunity to learn from some of the world’s leaders in a range of molecular modelling techniques. 2015-06-03 09:00:00 UTC 2015-06-05 00:00:00 UTC University of Melbourne Alan Gilbert Building, Melbourne, Australia Alan Gilbert Building Melbourne Australia Data visualisation Molecular modelling [] [] [] workshops_and_courses [] ABRBioinformaticslifescience
  • 2-day Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    2-day Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/2-day-introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. Workshop Outline -Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Monash University, Melbourne, Australia Monash University Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPAIntroduction
  • Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Melbourne, Australia Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPABioinformaticsRNA
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    22 - 23 November 2016

    Edinburgh, United Kingdom

    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2016-11-22 00:00:00 UTC 2016-11-23 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom ChIP-seq Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsChIP-seq
  • Introduction to Molecular Modelling & Visualisation for Life Sciences

    29 November 2016

    Melbourne, Australia

    Introduction to Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/introduction-to-molecular-modelling-visualisation-for-life-sciences-667d4af2-9938-413c-a933-f1dc88712b2e This VLSCI workshop introduces beginners to molecular modelling and visualisation techniques using packages such as VMD and NAMD. The participants will be given practical exercises to visualise molecules as well as learn how to submit jobs to the VLSCI clusters. It is recommended that participants attend Introduction to High Performance Computing at VLSCI prior to this workshop. If a participant is not familiar with using the command line, he/she should also attend the Introduction to Unix workshop. Attendees are requested to bring their laptops with the following programs installed before arriving: VMD (http://www.ks.uiuc.edu/Research/vmd/) Putty (http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html) - only if they have Windows. 2016-11-29 09:00:00 UTC 2016-11-29 00:00:00 UTC VLSCI - University of Melbourne Lab-14, Melbourne, Australia Lab-14 Melbourne Australia Molecular modelling Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIBioinformatics
  • Intermediate Molecular Modelling & Visualisation for Life Sciences

    29 November 2016

    Melbourne, Australia

    Intermediate Molecular Modelling & Visualisation for Life Sciences https://tess.elixir-europe.org/events/intermediate-molecular-modelling-visualisation-for-life-sciences-e9e6da11-0063-4b6f-aca9-d869e351a110 This workshop is for the intermediate user who is already familiar with molecular modelling and submitting cluster jobs, and is interested in learning more advanced job submission and visualisation techniques. Topics include: advanced job submission scripts; data analysis; and molecular image and movie making. Participants are required to bring their own laptop computers with VMD or PyMol installed. VMD (http://www.ks.uiuc.edu/Research/vmd/) Putty (http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html) - only if the participant has Windows. 2016-11-29 09:00:00 UTC 2016-11-29 00:00:00 UTC VLSCI - University of Melbourne Lab-14, Melbourne, Australia Lab-14 Melbourne Australia Molecular modelling Bioinformatics [] [] [] workshops_and_courses [] ABRVLSCIBioinformatics
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics

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