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  • Systems Metabolomics – A research collaborative in Melbourne

    3 March 2015

    Melbourne, Australia

    Systems Metabolomics – A research collaborative in Melbourne https://tess.elixir-europe.org/events/systems-metabolomics-a-research-collaborative-in-melbourne A Victorian Systems Biology Collaborative to engage researchers to present their latest projects. There would be a discussion forum and networking session to explore different perspectives on the future of metabolomics research. 2015-03-03 09:00:00 UTC 2015-03-03 00:00:00 UTC University of Melbourne Melbourne Brain Centre, Kenneth Myer Building, Parkville, Melbourne, Australia Melbourne Brain Centre, Kenneth Myer Building, Parkville Melbourne Australia Data architecture, analysis and design Data mining Systems biology Metabolomics [] [] [] meetings_and_conferences [] ABRBioinformaticslifescience
  • EMBL-ABR Training Day: CyVerse

    11 April 2016

    Melbourne, Australia

    EMBL-ABR Training Day: CyVerse https://tess.elixir-europe.org/events/embl-abr-training-day-cyverse Through several hands-on demos and guided exercises, workshop participants will get a comprehensive look at CyVerse tools and services for large-scale data analysis. Use cases will draw on topics in genomics (including RNA-Seq, assembly, annotation, etc.) and lectures on theory will help you to plan, build, and critique your own experiments. 2016-04-11 09:00:00 UTC 2016-04-11 00:00:00 UTC VLSCI - University of Melbourne VLSCI, Melbourne, Australia VLSCI Melbourne Australia Data architecture, analysis and design Computational biology Data management Data submission, annotation and curation [] [] [] workshops_and_courses [] ABRBPABioinformatics
  • 2-day Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    2-day Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/2-day-introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. Workshop Outline -Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Monash University, Melbourne, Australia Monash University Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPAIntroduction
  • Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Melbourne, Australia Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPABioinformaticsRNA
  • Data Storytelling for Researchers: Research Communication & Visualisation Workshop

    25 - 26 June 2016

    Melbourne, Australia

    Data Storytelling for Researchers: Research Communication & Visualisation Workshop https://tess.elixir-europe.org/events/data-storytelling-for-researchers-research-communication-visualisation-workshop Two-day comprehensive introduction to the latest data mining & data visualisation tools for University of Melbourne researchers. 2016-06-25 09:00:00 UTC 2016-06-26 00:00:00 UTC University of Melbourne University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Data management Data visualisation Data architecture, analysis and design Computer science [] [] [] workshops_and_courses [] ABR
  • AutoDesk Inventor Training

    29 - 30 June 2016

    Melbourne, Australia

    AutoDesk Inventor Training https://tess.elixir-europe.org/events/autodesk-inventor-training Autodesk Inventor training 2016-06-29 09:00:00 UTC 2016-06-30 00:00:00 UTC University of Melbourne University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Software engineering Data visualisation Data architecture, analysis and design [] [] [] workshops_and_courses [] ABR
  • EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis

    14 - 15 November 2016

    Melbourne, Australia

    EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis https://tess.elixir-europe.org/events/embl-abr-goblet-hands-on-training-rna-seq-data-analysis A one and a half days workshop that covers hands-on introduction to RNA-seq data analysis. The attendees would learn about the theory, tools and file formats involved right from raw RNA sequence to differentially expressed genes. The workshop would have alternating short lectures and hands-on exercises. 2016-11-14 09:00:00 UTC 2016-11-15 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data architecture, analysis and design Data management Computational biology Bioinformatics RNA-Seq [] [] [] meetings_and_conferences [] ABRVLSCIBioinformaticslifescience
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    22 - 23 November 2016

    Edinburgh, United Kingdom

    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2016-11-22 00:00:00 UTC 2016-11-23 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom ChIP-seq Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsChIP-seq
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics
  • Data processing with R tidyverse

    19 - 22 February 2018

    Esch-sur-Alzette, Luxembourg

    Data processing with R tidyverse https://tess.elixir-europe.org/events/data-processing-with-r-tidyverse This four day course provides a complete introduction to data science in R with the tidyverse. Participants should have basic experience in programming environments such as Matlab, Octave or other programming languages or complete a simple free online course as this one offered by DataCamp. The course will not go deep into statistics but rather getting data ready, some exploratory analysis, visualization and handling models. Preparing data takes up to 90% of the time spent in analysis — speeding this up is the mission of this course. Day 1 will review the basics of R and loading data via the readr package as well as Markdown. Day 2 will introduce tidying and organising data via the tidyr and dplyr packages as well as ggplot2 for visualisation. Day 3 will look at functional programming tools using the purrr package, which greatly simplifies repeating operations. Many statistical packages have complicated and idiosyncratic data structures. The broom package helps to convert them to consistent data structures. Participants are encouraged to bring their own data for analysis, convert existing code to tidyverse or perform a project on Day 4. Speakers: Aurélien GINOLHAC (LSRU, University of Luxembourg), Eric KONCINA (LSRU, University of Luxembourg), Roland KRAUSE (ELIXIR-LU/LCSB, University of Luxembourg) Registration is now open and will close on January 8th, 2018. 2018-02-19 09:30:00 UTC 2018-02-22 18:00:00 UTC ELIXIR Luxembourg University of Luxembourg, Campus, Belval, Maison du Savoir (MSA), Esch-sur-Alzette, Luxembourg University of Luxembourg, Campus, Belval, Maison du Savoir (MSA) Esch-sur-Alzette Luxembourg L-4366 Data architecture, analysis and design Data visualisation University of Luxembourg Roland Krause, ELIXIR-LU [] [] workshops_and_courses first_come_first_served []

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