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  • Systems Metabolomics – A research collaborative in Melbourne

    3 March 2015

    Melbourne, Australia

    Systems Metabolomics – A research collaborative in Melbourne https://tess.elixir-europe.org/events/systems-metabolomics-a-research-collaborative-in-melbourne A Victorian Systems Biology Collaborative to engage researchers to present their latest projects. There would be a discussion forum and networking session to explore different perspectives on the future of metabolomics research. 2015-03-03 09:00:00 UTC 2015-03-03 00:00:00 UTC University of Melbourne Melbourne Brain Centre, Kenneth Myer Building, Parkville, Melbourne, Australia Melbourne Brain Centre, Kenneth Myer Building, Parkville Melbourne Australia Data architecture, analysis and design Data mining Systems biology Metabolomics [] [] [] meetings_and_conferences [] ABRBioinformaticslifescience
  • EMBL-ABR Training Day: CyVerse

    11 April 2016

    Melbourne, Australia

    EMBL-ABR Training Day: CyVerse https://tess.elixir-europe.org/events/embl-abr-training-day-cyverse Through several hands-on demos and guided exercises, workshop participants will get a comprehensive look at CyVerse tools and services for large-scale data analysis. Use cases will draw on topics in genomics (including RNA-Seq, assembly, annotation, etc.) and lectures on theory will help you to plan, build, and critique your own experiments. 2016-04-11 09:00:00 UTC 2016-04-11 00:00:00 UTC VLSCI - University of Melbourne VLSCI, Melbourne, Australia VLSCI Melbourne Australia Data architecture, analysis and design Computational biology Data management Data submission, annotation and curation [] [] [] workshops_and_courses [] ABRBPABioinformatics
  • Data Interpretation and Reporting with R

    11 May 2016

    Brisbane, Australia

    Data Interpretation and Reporting with R https://tess.elixir-europe.org/events/data-interpretation-and-reporting-with-r This hands-on workshop will introduce users of the R software environment to the techniques involved in generating reproducible, dynamic data analyses and reports. Using literate programming approaches, participants will learn to build automated reusable reports in R. Practical exercises will include integration and manipulation of datasets, generation of summary statistics about a dataset, and how to produce high-quality tables and charts. Recommended participants Biologists and bioinformaticians wishing to structure and interpret data and generate dynamic reports using R. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Building dynamic reports for reproducible research with literate programming techniques Reformatting data and summarising and integrating datasets Generating high-quality graphic presentations of data Producing reusable scripts in R After this course you should be able to: Import tabular data files into R Use R to merge data from two or more files based on common fields Extract data from a table and summarise it in both text and graphical formats Create a knitR template that combines automated data analysis with free-form text interpretation 2016-05-11 09:00:00 UTC 2016-05-11 00:00:00 UTC University of Queensland University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRRQFAB
  • Differential Gene Expression Analysis with R (microarray and NGS)

    25 May 2016

    Brisbane, Australia

    Differential Gene Expression Analysis with R (microarray and NGS) https://tess.elixir-europe.org/events/differential-gene-expression-analysis-with-r-microarray-and-ngs This hands-on workshop will introduce users of the R software environment to the specific skills and applications used in the analysis of microarray and next-generation sequencing (NGS) data. Practical exercises will include quality control and normalisation of data for differential gene expression, and linking genomic information to external public datasets. Recommended participants Biologists and bioinformaticians wishing to use R for RNA expression analysis. Prior expertise with R and the command line interface is required, to a level equivalent of that provided by the QFAB workshop “Introduction to R”. What will I learn? During this course you will learn about: Pre-processing and quality control of microarray and RNA-Seq data The use of R packages for the identification of differentially-expressed genes from expression data Systems biology interpretation of gene lists using pathway analysis Integration of expression and genome data with Ensembl databases After this course you should be able to: Import Affymetrix CEL files to R as data objects Carry out standard QC tests on microarray and RNA-Seq datasets Use the limma-voom R package to produce lists of differentially expressed genes between pairs of samples Identify over-represented gene ontology categories in gene lists using the GOStats package 2016-05-25 09:00:00 UTC 2016-05-25 00:00:00 UTC University of Queensland, Brisbane, Australia University of Queensland Brisbane Australia Sequencing Gene expression Data architecture, analysis and design [] [] [] workshops_and_courses [] ABRQFABR
  • 2-day Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    2-day Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/2-day-introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. Workshop Outline -Topics covered by this workshop include: -An introduction to the command line interface and NGS file formats -Assessment of the quality of NGS sequence reads -Sequence alignment algorithms -Basic ChIP-Seq analysis -Basic RNA-Seq analysis 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Monash University, Melbourne, Australia Monash University Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPAIntroduction
  • Introduction to NGS Data Analysis

    14 - 15 June 2016

    Melbourne, Australia

    Introduction to NGS Data Analysis https://tess.elixir-europe.org/events/introduction-to-ngs-data-analysis This Introduction to NGS Data Analysis is a two-day, hands-on workshop that offers attendees a basic understanding of NGS data analysis workflows. The workshop provides hands-on computational experience in analysis of NGS data using common analytical approaches for ChIP-Seq and RNA-Seq data. 2016-06-14 09:00:00 UTC 2016-06-15 00:00:00 UTC Monash University Melbourne, Australia Melbourne Australia Bioinformatics Data architecture, analysis and design ChIP-seq RNA-Seq [] [] [] workshops_and_courses [] ABRBPABioinformaticsRNA
  • Data Storytelling for Researchers: Research Communication & Visualisation Workshop

    25 - 26 June 2016

    Melbourne, Australia

    Data Storytelling for Researchers: Research Communication & Visualisation Workshop https://tess.elixir-europe.org/events/data-storytelling-for-researchers-research-communication-visualisation-workshop Two-day comprehensive introduction to the latest data mining & data visualisation tools for University of Melbourne researchers. 2016-06-25 09:00:00 UTC 2016-06-26 00:00:00 UTC University of Melbourne University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Data management Data visualisation Data architecture, analysis and design Computer science [] [] [] workshops_and_courses [] ABR
  • AutoDesk Inventor Training

    29 - 30 June 2016

    Melbourne, Australia

    AutoDesk Inventor Training https://tess.elixir-europe.org/events/autodesk-inventor-training Autodesk Inventor training 2016-06-29 09:00:00 UTC 2016-06-30 00:00:00 UTC University of Melbourne University of Melbourne, Melbourne, Australia University of Melbourne Melbourne Australia Software engineering Data visualisation Data architecture, analysis and design [] [] [] workshops_and_courses [] ABR
  • Software Carpentry with R COMBINE Workshop

    11 - 12 July 2016

    Brisbane, Australia

    Software Carpentry with R COMBINE Workshop https://tess.elixir-europe.org/events/software-carpentry-with-r-combine-workshop This Software Carpentry with R workshop is a tie-in to the 2016 UQ Winter School in Mathematical and Computational Biology. The workshop is being brought to you by COMBINE. Attendees must have registered for at least some part of the UQ Winter School. 2016-07-11 09:00:00 UTC 2016-07-12 00:00:00 UTC University of Queensland Brisbane, Australia Brisbane Australia Data architecture, analysis and design Computer science Bioinformatics [] [] [] workshops_and_courses [] ABRCOMBINEBioinformatics
  • HANDS-ON WORKSHOP: BIOCONDUCTOR / SHINY FOR GENOMIC ANALYSIS

    3 November 2016

    Brisbane, Australia

    HANDS-ON WORKSHOP: BIOCONDUCTOR / SHINY FOR GENOMIC ANALYSIS https://tess.elixir-europe.org/events/hands-on-workshop-bioconductor-shiny-for-genomic-analysis The Bioconductor project (http://bioconductor.org) is a widely used collection of over 1,200 R packages for high-throughput genomic analysis. This workshop introduces established and new Bioconductor packages and workflows for analyzing high-throughput sequence data. The Shiny (http://shiny.rstudio.com) library and web server make it possible to create an interactive interface to R code and graphics. In the second part of this workshop, participants will write a simple genome browser using Shiny. By the end of the workshop, participants will be able to create their own interactive apps allowing sharing of analyses with collaborators. 2016-11-03 09:00:00 UTC 2016-11-03 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • Multivariate data analysis methods for biological data using the R package mixOmics

    4 November 2016

    Brisbane, Australia

    Multivariate data analysis methods for biological data using the R package mixOmics https://tess.elixir-europe.org/events/multivariate-data-analysis-methods-for-biological-data-using-the-r-package-mixomics The workshop will introduce the fundamental concepts of multivariate dimension reduction methodologies for data exploration, identification of biomarkers and integration of large data sets; especially in the context of systems biology, or in research areas where statistical data integration is required. The mixOmics workshop is aimed to data analysts in the fields of bioinformatics, computational biology and applied statistics with a good statistical knowledge and a good working knowledge in R. 2016-11-04 09:00:00 UTC 2016-11-04 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • ABACBS/GOBLET RNA-Seq Data Analysis Workshop

    10 November 2016

    Brisbane, Australia

    ABACBS/GOBLET RNA-Seq Data Analysis Workshop https://tess.elixir-europe.org/events/abacbs-goblet-rna-seq-data-analysis-workshop This hands-on course introduces the participants to RNA-seq data analysis methods, tools and file formats. It covers the whole workflow from quality control and alignment to quantification and differential expression analysis, and also experimental design is discussed. This course is suitable to those who intend to employ RNA-seq in their research and who would like to understand the concepts underlying this method, even if they do not intend to analyse the data themselves. 2016-11-10 09:00:00 UTC 2016-11-10 00:00:00 UTC Queensland University of Technology Brisbane, Australia Brisbane Australia Data architecture, analysis and design Bioinformatics [] [] [] workshops_and_courses [] ABR
  • EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis

    14 - 15 November 2016

    Melbourne, Australia

    EMBL-ABR/GOBLET Hands-on training: RNA-seq data analysis https://tess.elixir-europe.org/events/embl-abr-goblet-hands-on-training-rna-seq-data-analysis A one and a half days workshop that covers hands-on introduction to RNA-seq data analysis. The attendees would learn about the theory, tools and file formats involved right from raw RNA sequence to differentially expressed genes. The workshop would have alternating short lectures and hands-on exercises. 2016-11-14 09:00:00 UTC 2016-11-15 00:00:00 UTC VLSCI - University of Melbourne LAB-14, Melbourne, Australia LAB-14 Melbourne Australia Data architecture, analysis and design Data management Computational biology Bioinformatics RNA-Seq [] [] [] meetings_and_conferences [] ABRVLSCIBioinformaticslifescience
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    22 - 23 November 2016

    Edinburgh, United Kingdom

    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2016-11-22 00:00:00 UTC 2016-11-23 00:00:00 UTC Edinburgh Genomics The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom ChIP-seq Bioinformatics [] [] [] workshops_and_courses [] BioinformaticsChIP-seq
  • Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl

    23 - 24 November 2017

    Edinburgh, United Kingdom

    Elixir node event
    Introduction to ChIP-seq Data Analysis and Visualisation using Ensembl https://tess.elixir-europe.org/events/introduction-to-chip-seq-data-analysis-and-visualisation-using-ensembl-d125d464-c708-4919-8322-19d50246c22d ChIP-seq (Chromatin ImmunoPrecipitation followed by Sequencing) is a popular high-throughput sequencing assay to identify binding sites of DNA-associated proteins and histone modifications. Determining how proteins interact with DNA and the epigenetic landscape is essential for elucidating the regulation of gene expression. The aim of this workshop is to familiarise the participants with the primary analysis of ChIP-seq data sets by providing a balanced set of lectures and practicals on analysis methodologies. Practicals include publicly available ChIP-seq datasets, processed using widely used and open-source software programs (e.g. FASTQC, BWA, samtools, bedtools, wiggletools, MACS2, MEME, TOMTOM, ngsplot) and visualised on the Ensembl genome browser. 2017-11-23 09:00:00 UTC 2017-11-24 17:00:00 UTC The King's Buildings, The University of Edinburgh, Edinburgh, United Kingdom The King's Buildings, The University of Edinburgh Edinburgh United Kingdom EH9 3JN Genomics ChIP-seq Bioinformatics Edinburgh Genomics Bert Overduin - bert.overduin@ed.ac.uk [] [] workshops_and_courses [] BioinformaticsChIP-seqGenomics

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