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10 events found

City: Bogota  or Copenhagen  or Chicago  or Ljubljana  or Carlton 

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Keywords: ISCB  or RNA-Seq  or genomics 

  • Galaxy Community Conference

    26 - 28 July 2012

    Chicago, United States of America

    Galaxy Community Conference https://tess.elixir-europe.org/events/galaxy-community-conference 2012-07-26 09:00:00 UTC 2012-07-28 00:00:00 UTC Galaxy Project UIC Forum, Chicago, United States of America UIC Forum Chicago United States of America Bioinformatics [] [] [] meetings_and_conferences [] OtherEventsISCB
  • 12th International Workshop on Data Mining in Bioinformatics

    12 August 2013

    Chicago, United States of America

    12th International Workshop on Data Mining in Bioinformatics https://tess.elixir-europe.org/events/12th-international-workshop-on-data-mining-in-bioinformatics 2013-08-12 09:00:00 UTC 2013-08-12 00:00:00 UTC Chicago, United States of America Chicago United States of America Bioinformatics [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • HiCOMB 2016

    23 - 27 May 2016

    Chicago, United States of America

    HiCOMB 2016 https://tess.elixir-europe.org/events/hicomb-2016 2016-05-23 01:00:00 UTC 2016-05-27 01:00:00 UTC Chicago, United States of America Chicago United States of America [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • Introduction to Galaxy and the Genomics Virtual Laboratory

    4 May 2017

    Carlton, Australia

    Introduction to Galaxy and the Genomics Virtual Laboratory https://tess.elixir-europe.org/events/introduction-to-galaxy-and-the-genomics-virtual-laboratory Galaxy is an open source, web-based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis. Finally, it allows users to share and publish analyses via the web. This beginners workshop will introduce Galaxy’s interface, tool use, histories, and workflows and get new users of the Genomics Virtual Laboratory up and running. 2017-05-04 09:30:00 UTC 2017-05-04 12:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, Lab-14, 700 Swanston St, Carlton, Australia Melbourne Bioinformatics, Lab-14, 700 Swanston St Carlton Australia Bioinformatics University of Melbourne [] [] workshops_and_courses [] genomics
  • Genome assembly and annotation course 2

    19 - 23 June 2017

    Ljubljana, Slovenia

    Elixir node event
    Genome assembly and annotation course 2 https://tess.elixir-europe.org/events/genome-assembly-and-annotation-course-2 ELIXIR Genome assembly and annotation course 2, June 19-23 2017 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia 2017-06-19 09:00:00 UTC 2017-06-23 17:00:00 UTC ELIXIR SI, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Slovenia Genomics University of Ljubljana, Faculty of Medicine [] life scientistsResearchersPhD students workshops_and_courses registration_of_interest genomicsassemblytrainingeLearningEeLP
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    4 October 2017

    Carlton, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl-bb89ebd1-8328-4935-b289-dca21e442a2b 2017-10-04 13:30:00 UTC 2017-10-04 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan Street, Carlton, Australia Melbourne Bioinformatics, 187 Grattan Street Carlton Australia 3053 Bioinformatics University of Melbourne [] [] workshops_and_courses [] RNA-SeqGalaxy
  • Genome Annotation using Apollo

    21 November 2017

    Carlton, Australia

    Genome Annotation using Apollo https://tess.elixir-europe.org/events/genome-annotation-using-apollo This workshop will include a short background lecture on the fundamentals of gene prediction and genome annotation followed by a hands-on component where we will conduct manual curation exercises using Apollo. The workshop has been organised by EMBL-ABR and will be led by Dr Monica Munoz-Torres from Phoenix Bioinformatics who is an expert in genome annotation, current chair of the International Society for Biocuration Executive Committee, and former Project Manager of the Apollo Project. Monica will be joining us direct from the San Francisco Bay Area, and we will have locally trained trainers on hand at various EMBL-ABR Nodes around Australia to help and facilitate the workshop locally. 2017-11-21 11:00:00 UTC 2017-11-21 14:00:00 UTC Melbourne Bioinformatics 187 Grattan St, 187, Grattan Street, Carlton, Australia 187 Grattan St, 187, Grattan Street Carlton Melbourne Australia Genomics Bioinformatics University of MelbourneUniversity of New South WalesUniversity of AdelaideJames Cook UniversityUniversity of QueenslandMonash University [] [] workshops_and_courses [] Annotationgenomicsbioinformatics
  • RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL

    20 March 2018

    Carlton, Australia

    RNA-Seq Differential Gene Expression Analysis using Galaxy and the GVL https://tess.elixir-europe.org/events/rna-seq-differential-gene-expression-analysis-using-galaxy-and-the-gvl-4382c79c-9b4f-4fe8-a568-faf5efafb1cb 2018-03-20 13:30:00 UTC 2018-03-20 16:30:00 UTC Melbourne Bioinformatics Melbourne Bioinformatics, 187 Grattan St , Carlton, Australia Melbourne Bioinformatics, 187 Grattan St Carlton Australia 3053 Bioinformatics University of Melbourne [] [] workshops_and_courses [] RNA-SeqDifferential expression
  • ELIXIR TtR course: Basic genomics using advanced analysis tools

    20 - 21 December 2018

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR TtR course: Basic genomics using advanced analysis tools https://tess.elixir-europe.org/events/elixir-ttr-course-basic-genomics-using-advanced-analysis-tools **NEW DATE FOR THE COURSE HAS BEEN SET: Dec. 20-21** **ELIXIR TtR course: Basic genomics using advanced analysis tools Genomic Data Science with Galaxy** **December 20-21, 2018**, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia) Galaxy is an open source, web-based platform for data intensive biomedical research. The Galaxy Platform provides user friendly software for producing reproducible genomic pipelines for data analysis. This workshop will provide a 2 day introductory session to Galaxy software system. The course will be in English. The course will take place in the computer classroom at the Institute of Biostatistics and Medical Informatics (IBMI), Faculty of Medicine, Vrazov trg 2, Ljubljana. **The limit of participants is 20**. This course will focus on introducing the Galaxy user interface and how it can be used for basic genomic analyses. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community. We will cover the basic features of Galaxy, including where to find tools, how to import and use your data, and an introduction to workflows. This session is recommended for anyone who has not used, or only rarely uses Galaxy. **Program topics:** Quick introduction to Galaxy UI (20.12. morning) From peaks to genes (20.12. morning) Reference-based RNA-seq - Quality control (20.12. afternoon) Reference-based RNA-seq - Sequencing (21.12. morning) Lecturers will be **Christophe Antoniewski** and **Olivier Inizan** from ELIXIR France. Course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR France**. ELIXIR is an European ESFRI priority research infrastructure for bioinformatics that provides databases, (software) tools, services and training (including training materials) for information, cloud storage and supercomputers in the area of life sciences. It coordinates, develops, integrates and sustains life science (bioinformatics) resources across Europe. **Prerequisites:** Wi-Fi enabled laptop with a modern web browser. Latest versions of Google Chrome, Firefox, Safari and Opera will work best. **Location: Faculty of Medicine, University of Ljubljana** If you have any questions about this course, please contact ELIXIR-SI 2018-12-20 09:00:00 UTC 2018-12-21 12:00:00 UTC ELIXIR Slovenia and Faculty of Medicine, University of Ljubljana University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine Ljubljana Central Slovenia Slovenia SI-1000 Genomics University of Ljubljana, Faculty of Medicine elixir@mf.uni-lj.si [] life scientistsPostgraduate studentsbeginner bioinformaticians 20 workshops_and_courses registration_of_interest galaxygenomicstrainingeLearningEeLP
  • ELIXIR Data Carpentry - Ljubljana

    29 - 30 January 2019

    Ljubljana, Slovenia

    Elixir node event
    ELIXIR Data Carpentry - Ljubljana https://tess.elixir-europe.org/events/elixir-data-carpentry-ljubljana **ELIXIR Data Carpentry for Genomics - Ljubljana** **29-30 Jan 2019, Faculty of Medicine, Vrazov trg 2, Ljubljana (Slovenia)** **ELIXIR Data Carpentry for Genomics** is a course intended for all those who would like to learn more about the basics of data processing and data management in the field of genomics. The course will be in English. **The limit of participants is 20.** If there are more applicants than available places, the participants will be selected based on their institutional and geographic background, while also taking into account the time of their registration. The course is free of charge. You can find more info about the course on the [**ELIXIR-SI eLearning Platform (EeLP)**](https://elixir.mf.uni-lj.si/course/view.php?id=44). The course will take place in the computer classroom at the **Institute of Biostatistics and Medical Informatics (IBMI)**, Faculty of Medicine, Vrazov trg 2, Ljubljana. Sessions will be intensive and hands-on, and taught by experienced data carpentry instructors. Instructors will be **Vasilis Lenis (University of Plymouth, UK)** and **Živa Ramšak (ELIXIR Slovenia; National Institute of Biology Ljubljana)**. The course is recommended for anyone who would like to learn more about how to process and manage big scale genomic data. **Program topics:** * Introduction - Presentation of ELIXIR Slovenia and ELIXIR-SI eLearning Platform * Project management in genomics and introduction to cloud computing * Introduction to Linux/Unix command line * Data wrangling and processing for genomics The course is organised by **ELIXIR Slovenia** in collaboration with **ELIXIR Hub** and **Data & Software Carpentry**. 2019-01-29 08:15:00 UTC 2019-01-30 12:30:00 UTC ELIXIR Slovenia, University of Ljubljana, Faculty of Medicine University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia, Ljubljana, Slovenia University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia Ljubljana Slovenia SI-1000 Genomics Data management Computer science University of Ljubljana, Faculty of Medicine ELIXIR EXCELERATE Life Science ResearchersPhD studentsMaster students 20 workshops_and_courses registration_of_interest EeLPeLearninggenomicsData carpentry
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