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75 events found

Organizer: University of Cambridge 

and

Scientific topics: Phylogenetics  or Data visualisation 

and

City: Bogota  or Copenhagen  or Cambridge  or Norwich  or Shanghai 

  • Analysis of mapped NGS data with SeqMonk

    3 February 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of mapped NGS data with SeqMonk https://tess.elixir-europe.org/events/analysis-of-mapped-ngs-data-with-seqmonk-43412e62-e3fc-4434-a56e-41cec9577dbf [SeqMonk](http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/) is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq. The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets. This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides. Further information is available [here](http://www.bioinformatics.babraham.ac.uk/training.html#seqmonk). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Analysing%20mapped%20NGS%20data%20with%20SeqMonk_bioinfo-seqmonk_03.02.2016_1572361&CourseName=Analysing%20mapped%20NGS%20data%20with%20SeqMonk&CourseDate=03.02.2016&CourseDuration=1&EventID=1572361).'' 2016-02-03 09:30:00 UTC 2016-02-03 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq Exome sequencing Data mining Data visualisation ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Molecular Phylogenetics

    20 - 22 April 2016

    Cambridge, United Kingdom

    Elixir node event
    Molecular Phylogenetics https://tess.elixir-europe.org/events/molecular-phylogenetics-e59d127b-28f9-496b-8225-52f6bd013d78 The course will provide training for bench-based biologists to use molecular data to construct and interpret phylogenies, and test their hypotheses. Delegates will gain hands-on practice of using a variety of programs freely available online and commonly used in molecular studies, interspersed with some lectures. Course timetable is available [here](https://drive.google.com/file/d/0B5BzNXp93Gp5WURyTFRUUGplbzg/view?usp=sharing). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Molecular%20Phylogenetics_bioinfo-phylng_20-22.04.2016_1572213&CourseName=Molecular%20Phylogenetics&CourseDate=20-22.04.2016&CourseDuration=3&EventID=1572213).'' 2016-04-20 08:30:00 UTC 2016-04-22 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Phylogenetics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Variant Analysis with GATK

    13 - 14 June 2016

    Cambridge, United Kingdom

    Elixir node event
    Variant Analysis with GATK https://tess.elixir-europe.org/events/variant-analysis-with-gatk-3624e45d-cd74-4297-bc4c-d40298e39632 This workshop will focus on the core steps involved in calling variants with the [Broad’s Genome Analysis Toolkit](https://www.broadinstitute.org/gatk/), using the “Best Practices” developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the GVCF workflow for joint variant discovery in cohorts, RNAseq­ specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery. The workshop is composed of one day of lectures (including many opportunities for Q&A) and one day of hands­on training. On the first day, we explain the rationale, theory and application of our Best Practices for Variant Discovery in high­-throughput sequencing data. On the second day, we walk attendees through hands­on exercises that teach how to manipulate the standard data formats involved in variant discovery and how to apply GATK tools appropriately to various use cases and data types. In the course of these exercises, we demonstrate useful tips and tricks for interacting with GATK, dealing with problems, and using third­party tools such as Samtools, IGV and RStudio. Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non ­human data, and we will address some questions regarding adaptations that are needed for analysis of non­ human data, but we will not go into much detail on those points. The timetable can be found [here](http://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/gatk). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Variant%20Analysis%20with%20GATK%20_13-14.06.2016_1572767&CourseName=Variant%20Analysis%20with%20GATK&CourseDate=13-14.06.2016&CourseDuration=2&EventID=1572767).'' 2016-06-13 08:30:00 UTC 2016-06-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq Genomics Exome sequencing Data visualisation Data mining ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] The lecture­ based component of the workshop is aimed at a mixed audience of people who are new to the topic of variant discovery or to GATKseeking an introductory course into the toolsor who are already GATK users seeking to improve their understanding of and proficiency with the tools.The hands­on component is aimed at novice to intermediate users who are seeking detailed guidance with GATK and related tools.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An introduction to metabolomics and its application in life-sciences

    20 - 21 June 2016

    Cambridge, United Kingdom

    Elixir node event
    An introduction to metabolomics and its application in life-sciences https://tess.elixir-europe.org/events/an-introduction-to-metabolomics-and-its-application-in-life-sciences-e1cd9f51-270e-469e-98c9-47469364c8a3 The goal of metabolomics is to identify and quantify the complete biochemical composition of a biological sample. With the increase in genomic, transcriptomic and proteomic information there is a growing need to understand the metabolic phenotype that these genes and proteins ultimately control. The aim of this course is to provide an overview of metabolomics and its applications in life sciences, clinical and environmental settings. Over 2 days we will introduce different techniques used to extract metabolites and analyse samples to collect metabolomic data (such as HPLC or GC-based MS and NMR), present how to analyse such data, how to identify metabolites using online databases and how to map the metabolomic data to metabolic pathways. The course content will predominantly be based on analysing samples from model plant species such as Arabidopsis thaliana but the procedures are transferable to all other organisms, including clinical and environmental settings. A draft agenda can be found [here](https://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/bioinfo-metaintro). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20introduction%20to%20metabolomics%20and%20its%20application%20in%20life-sciences_bioinfo-metaintro_20-21.06.2016_1572627&CourseName=An%20introduction%20to%20metabolomics%20and%20its%20application%20in%20life-sciences&CourseDate=20-21.06.2016&CourseDuration=2&EventID=1572627).'' 2016-06-20 08:30:00 UTC 2016-06-21 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Metabolomics Functional genomics Data visualisation Cell biology Bioinformatics University of Cambridge Bioinformatics Training [] This course is aimed at researchers with an interest in metabolomics and its applicationsGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Image Processing and Visualisation with LithoGraphX

    4 - 5 August 2016

    Cambridge, United Kingdom

    Elixir node event
    Image Processing and Visualisation with LithoGraphX https://tess.elixir-europe.org/events/image-processing-and-visualisation-with-lithographx [LithoGraphX](http://www.lithographx.org/) is a software to visualize, process and analyse 3D images and meshes. On the first day of this course, we will demonstrate how to use LithoGraphX to visualize, clean and process 2D and 3D images. We will cover: (i) how to extract cell shape from 2D or 3D images by marking the cell wall or membrane, (ii) how to extract key morphological features and (iii) how to use these features to build a cell classifier. The first day is intended for biologists and computer scientists interested in using LithoGraphX. On the second day, we will see how to write and distribute extensions to LithoGraphX. To this purpose, we will learn more about the internals of LithoGraphX and its API both in C++ and Python. The second day is intended for computer scientists wanting either to write their own algorithm or automate complex protocols. Participants can choose to register for both days or for individual days, depending on their interest and background knowledge. The timetable for this event can be found [here](http://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/bioinfo-litho). This course is organized in collaboration with Dr Susana Sauret-Gueto from the OpenPlant Lab of the Department of Plant Sciences of the University of Cambridge. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Image%20Processing%20and%20Visualisation%20with%20LithoGraphX_bioinfo-Litho_4-5.08.2016_1860699&CourseName=Image%20Processing%20and%20Visualisation%20with%20LithoGraphX&CourseDate=4-5.08.2016&CourseDuration=2&EventID=1860699).'' 2016-08-04 09:00:00 UTC 2016-08-05 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Day1 is intended for biologists and computer scientists interested in using LithoGraphX. Some experience in imaging is desirable but not required.Day2 is intended for computer scientists wanting either to write their own algorithm or automate complex protocols. Basic python knowledge and familiar with C++ are required.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Analysis of gene regulatory sequencing data: ChIP-seq, ATAC-seq and Hi-C

    24 - 25 November 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of gene regulatory sequencing data: ChIP-seq, ATAC-seq and Hi-C https://tess.elixir-europe.org/events/analysis-of-gene-regulatory-sequencing-data-chip-seq-atac-seq-and-hi-c This advanced course will cover high-throughput sequencing data processing, ChIP-seq data analysis (including alignment, peak calling), differences in analyses methods for transcription factors (TF) binding and epigenomic datasets, a range of downstream analysis methods for extracting meaningful biology from ChIP-seq data and will provide an introduction to the analysis of open chromatin with ATAC-seq and long-distance interactions with chromosomal conformation capture based Hi-C datasets. Materials for this course can be found [here](https://github.com/shamith-s/NGS_course). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1878956&course-title=Analysis%20of%20gene%20regulatory%20sequencing%20data).'' 2016-11-24 09:30:00 UTC 2016-11-25 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenomics Data visualisation ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Protein Structure Analysis

    28 - 29 November 2016

    Cambridge, United Kingdom

    Elixir node event
    Protein Structure Analysis https://tess.elixir-europe.org/events/protein-structure-analysis This course covers data resources and analytical approaches for the discovery and interpretation of biomacromolecular structures. Day 1 focuses on public repositories of structural data ([Protein Data Bank](http://www.ebi.ac.uk/pdbe/) and [Electron Microscopy Data Bank](https://www.ebi.ac.uk/pdbe/emdb/)) and resources for protein analysis and classification ([Pfam](http://pfam.xfam.org/), [InterPro](https://www.ebi.ac.uk/interpro/) and [HMMER](https://www.ebi.ac.uk/Tools/hmmer)). Day 2 covers how to find information about the structure and function of your protein sequence using [CATH](http://www.cathdb.info/), principles of modern state-of-the-art protein modelling with [ Phyre2](http://www.sbg.bio.ic.ac.uk/phyre2/) and methods for predicting the effects of mutations on protein structure and function using the [SAAP family of tools](http://www.bioinf.org.uk/saap/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1879212&course-title=Protein%20Structure%20Analysis).'' 2016-11-28 09:30:00 UTC 2016-11-29 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Protein structure analysis Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Analysis of DNA Methylation using Sequencing

    2 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally, the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Course materials are available [here](http://www.bioinformatics.babraham.ac.uk/training.html#bsseq). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1827776&course-title=The%20Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2016-12-02 09:30:00 UTC 2016-12-02 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Basic statistics and data handling

    7 - 9 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Basic statistics and data handling https://tess.elixir-europe.org/events/basic-statistics-and-data-handling This three day course is intended to open doors to applying statistics - whether directly increasing skills and personally undertaking analyses, or by expanding knowledge towards identifying collaborators. The end goal is to drive confident engagement with data analysis and further training - increasing the quality and reliability of interpretation, and putting that interpretation and subsequent presentation into the hands of the researcher. Each day of the course will deliver a mixture of lecture, workshop and hands-on practice – and will focus on the following specific elements. Day 1 focuses on basic approaches and the computer skills required to do downstream analysis. Covering: Basic skills for data manipulation in R. How to prepare your data effectively. Principles of experimental design and how this influences analysis. On day 2, participants will explore the core concepts of statistics – so that they can begin to see how they can be applied to their own work, and to also help with better critical evaluation of the work of others. Covering: Basic statistics concepts and practice: power, variability, false discovery, t-test, effect size, simulations to understand what a p-value means. On day 3 will use some practical statistics examples in R to introduce concepts in data presentation for publication. Covering: Some practical examples of statistics in R. Visualising and publishing your data. Course materials are available [here](https://bioinformatics-core-shared-training.github.io/winter-school2016/). This event is sponsored by [CRUK](http://www.cancerresearchuk.org/). 2016-12-07 09:30:00 UTC 2016-12-09 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] The course is aimed primarily at mid-career scientists – especially those whose formal education likely included statisticsbut who have not perhaps put this into practice since.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Image Analysis for Biologists

    12 - 14 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Image Analysis for Biologists https://tess.elixir-europe.org/events/image-analysis-for-biologists-a6ce3427-1d29-46e0-9738-bc9d4dca1538 This course will focus on computational methods for analysing cellular images and extracting quantitative data from them. The aim of this course is to familiarise the participants with computational image analysis methodologies, and to provide hands-on training in running quantitative analysis pipelines. On day 1 we will introduce principles of image processing and analysis, giving an overview of commonly used algorithms through a series of talks and practicals based on [Fiji](http://fiji.sc/), an extensible open source software package. On day 2, we will describe the open [Icy platform](http://icy.bioimageanalysis.org/) developed at the Institut Pasteur. Icy is a next-generation, user-friendly software offering powerful acquisition, visualization, annotation and analysis algorithms for 5D bioimaging data, together with unique automation/scripting capabilities (notably via its graphical programming interface) and tight integration with existing software (e.g. ImageJ, Matlab, Micro-Manager). On day 3, we will cover time series processing and cell tracking using [TrackMate](http://imagej.net/TrackMate). Additionally, in the afternoon we will run a study design and data clinic (sign up will be required) for participants that wish to discuss their experiments. A timetable is available [here](http://bioinfotraining.bio.cam.ac.uk/postgraduate/specialized/bioinfo-image). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1879343&course-title=Image%20Analysis%20for%20Biologists).'' 2016-12-12 09:30:00 UTC 2016-12-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Data mining Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Researchers who are applying or planning to apply image analysis in their researchGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Using CellProfiler and CellProfiler Analyst to analyse biological images

    15 - 16 December 2016

    Cambridge, United Kingdom

    Elixir node event
    Using CellProfiler and CellProfiler Analyst to analyse biological images https://tess.elixir-europe.org/events/using-cellprofiler-and-cellprofiler-analyst-to-analyse-biological-images Microscopy experiments have proven to be a powerful means of generating information-rich data for biological applications. From small-scale microscopy experiments to time-lapse movies and high-throughput screens, automatic image analysis is more objective and quantitative and less tedious than visual inspection. This course will introduce users to the free open-source image analysis program [CellProfiler](http://cellprofiler.org/) and its companion data exploration program CellProfiler Analyst. We will show how CellProfiler can be used to analyse a variety of types of imaging experiments. We will also briefly discuss the basic principles of supervised machine learning with CellProfiler Analyst in order to score complex and subtle phenotypes. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1879361&course-title=Using%20CellProfiler%20and%20CellProfiler%20Analyst%20to%20analyse%20biological%20images).'' 2016-12-15 09:30:00 UTC 2016-12-16 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Data mining Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Researchers who want to extract quantitative information from microscopy imagesGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Data Analysis and Visualisation in R

    26 January 2017

    Cambridge, United Kingdom

    Elixir node event
    Data Analysis and Visualisation in R https://tess.elixir-europe.org/events/data-analysis-and-visualisation-in-r-1adbe2a5-a87e-4e55-9322-3cb297a94d9a This course introduces some relatively new additions to the R programming language: dplyr and ggplot2. In combination these R packages provide a powerful toolkit to make the process of manipulating and visualising data easy and intuitive. Materials for this course can be found [here](http://bioinformatics-core-shared-training.github.io/r-intermediate/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923726&course-title=Data%20analysis%20and%20visualisation).'' 2017-01-26 09:30:00 UTC 2017-01-26 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Biology Bioinformatics University of Cambridge Bioinformatics Training [] Existing R users who are not familiar with dplyr and ggplot2Those with programming experience in other languages that want to know what R can offer themGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to Scientific Figure Design

    7 February 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Scientific Figure Design https://tess.elixir-europe.org/events/introduction-to-scientific-figure-design-b8ab0816-72c2-4a30-9fd3-caf7cc583b37 This course provides a practical guide to producing figures for use in reports and publications. It is a wide ranging course which looks at how to design figures to clearly and fairly represent your data, the practical aspects of graph creation, the allowable manipulation of bitmap images and compositing and editing of final figures. The course will use a number of different open source software packages and is illustrated with a number of example figures adapted from common analysis tools. Further information and access to the course materials is [here](http://www.bioinformatics.babraham.ac.uk/training.html#figuredesign). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923819&course-title=Introduction%20to%20Scientific%20Figure%20Design).'' 2017-02-07 09:30:00 UTC 2017-02-07 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Analysis of single cell RNA-seq data

    16 - 17 March 2017

    Cambridge, United Kingdom

    Elixir node event
    Analysis of single cell RNA-seq data https://tess.elixir-europe.org/events/analysis-of-single-cell-rna-seq-data-0d696dc2-9a71-4101-9f84-9c3ac28b0eb5 Recent technological advances have made it possible to obtain genome-wide transcriptome data from single cells using high-throughput sequencing (scRNA-seq). Even though scRNA-seq makes it possible to address problems that are intractable with bulk RNA-seq data, analysing scRNA-seq is also more challenging. In this course we will be surveying the existing problems as well as the available computational and statistical frameworks available for the analysis of scRNA-seq. The course website providing links to the course materials can be found [here](http://hemberg-lab.github.io/scRNA.seq.course/index.html). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923637&&course-title=Analysis%20of%20single%20cell%20RNA-seq%20data).'' 2017-03-16 09:30:00 UTC 2017-03-17 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Transcriptomics Functional genomics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to high-throughput sequencing data analysis

    28 - 31 March 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to high-throughput sequencing data analysis https://tess.elixir-europe.org/events/introduction-to-high-throughput-sequencing-data-analysis This course provides an introduction to high-throughput sequencing (HTS) data analysis methodologies. Lectures will give insight into how biological knowledge can be generated from RNA-seq, ChIP-seq and DNA-seq experiments and illustrate different ways of analyzing such data. Practicals will consist of computer exercises that will enable the participants to apply statistical methods to the analysis of RNA-seq, ChIP-seq and DNA-seq data under the guidance of the lecturers and teaching assistants. It is aimed at researchers who are applying or planning to apply HTS technologies and bioinformatics methods in their research. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1983575&course-title=Introduction%20to%20high-throughput%20sequencing%20data%20analysis).'' 2017-03-28 08:30:00 UTC 2017-03-31 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Transcriptomics RNA-Seq Functional genomics Epigenomics Data visualisation Data mining ChIP-seq Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Basic statistics and data handling

    3 - 5 April 2017

    Cambridge, United Kingdom

    Elixir node event
    Basic statistics and data handling https://tess.elixir-europe.org/events/basic-statistics-and-data-handling-eefdec71-300e-43f3-ae60-9d17eab0f745 This three day course is intended to open doors to applying statistics - whether directly increasing skills and personally undertaking analyses, or by expanding knowledge towards identifying collaborators. The end goal is to drive confident engagement with data analysis and further training - increasing the quality and reliability of interpretation, and putting that interpretation and subsequent presentation into the hands of the researcher. Each day of the course will deliver a mixture of lectures, workshops and hands-on practicals – and will focus on the following specific elements. Day 1 focuses on basic approaches and the computer skills required to do downstream analysis. Covering: Basic skills for data manipulation in R. How to prepare your data effectively. Principles of experimental design and how this influences analysis. On day 2, participants will explore the core concepts of statistics – so that they can begin to see how they can be applied to their own work, and to also help with better critical evaluation of the work of others. Covering: Basic statistics concepts and practice: power, variability, false discovery, t-test, effect size, simulations to understand what a p-value means. On day 3 we will continue to explore core concepts of statistics, focusing on linear regression and multiple testing correction. Course materials are available [here](https://github.com/cambiotraining/stats-intro). This event is supported by the BBSRC Strategic Training Awards for Research Skills (STARS) grant (BB/P022766/1). Please note that all participants attending this course will be charged a registration fee of £150. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2034285&course-title=Basic%20statistics%20and%20data%20handling).'' 2017-04-03 08:30:00 UTC 2017-04-05 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] The course is aimed primarily at mid-career scientists – especially those whose formal education likely included statisticsbut who have not perhaps put this into practice since.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Molecular Phylogenetics

    19 - 21 April 2017

    Cambridge, United Kingdom

    Elixir node event
    Molecular Phylogenetics https://tess.elixir-europe.org/events/molecular-phylogenetics-8c47b6db-db1a-4f3a-ae03-1c66a14e7536 This course will provide training for bench-based biologists to use molecular data to construct and interpret phylogenies, and test their hypotheses. Delegates will gain hands-on practice of using a variety of programs freely-available online and commonly used in molecular studies, interspersed with some lectures. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2008248&course-title=Molecular%20Phylogenetics).'' 2017-04-19 08:00:00 UTC 2017-04-21 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge Cambridgeshire United Kingdom CB2 3AR Phylogenetics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Analysis of small RNA-seq data

    2 - 3 May 2017

    Cambridge, United Kingdom

    Elixir node event
    Analysis of small RNA-seq data https://tess.elixir-europe.org/events/analysis-of-small-rna-seq-data This course focuses on methods for the analysis of small non-coding RNA data obtained from high-throughput sequencing (HTS) applications (small RNA-seq). During the course, approaches to the investigation of all classes of small non-coding RNAs will be presented, in all organisms. Day 1 will focus on the analysis of microRNAs and day 2 will cover the analysis of other types of small RNAs, including Piwi-interacting (piRNA), small interfering (siRNA), small nucleolar (snoRNA) and tRNA-derived (tsRNA). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2010014&&course-title=Analysis%20of%20small%20RNA-seq%20data).'' 2017-05-02 08:30:00 UTC 2017-05-03 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Functional genomics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Analysis of RNA-seq data with Bioconductor

    4 - 5 May 2017

    Cambridge, United Kingdom

    Elixir node event
    Analysis of RNA-seq data with Bioconductor https://tess.elixir-europe.org/events/analysis-of-rna-seq-data-with-bioconductor This course provides an introduction to the tools available through the Bioconductor project for manipulating and analysing bulk RNA-seq data. We will present a workflow for the analysis RNA-seq data starting from aligned reads in bam format and producing a list of differentially-expressed genes. We will also describe the various resources available through Bioconductor to annotate, visualise and gain biological insight from the differential expression results. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2036601&course-title=Analysis%20of%20RNA-seq%20data%20with%20Bioconductor).'' 2017-05-04 08:30:00 UTC 2017-05-05 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Functional genomics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Introduction to genome variation analysis using NGS

    18 - 19 May 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to genome variation analysis using NGS https://tess.elixir-europe.org/events/introduction-to-genome-variation-analysis-using-ngs This course provides an introduction to the analysis of human genome sequence variation with next generation sequencing data (NGS), including: *an introduction to genetic variation as well as data formats and analysis workflows commonly used in NGS data analysis; *an overview of available analytical tools and discussion of their limitations; and *hands-on experience with common computational workflows for analysing genome sequence variation using bioinformatics and computational genomics approaches. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923651&course-title=Introduction%20to%20genome%20variation%20analysis%20using%20NGS).'' 2017-05-18 08:30:00 UTC 2017-05-19 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Genomics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses first_come_first_served HDRUK
  • Analysis of DNA Methylation using Sequencing

    14 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing-82f6a29e-f4ac-4f20-a329-90b60855ae5f This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=1923832&course-title=Analysis%20of%20DNA%20Methylation%20using%20Sequencing).'' 2017-06-14 08:30:00 UTC 2017-06-14 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Epigenetics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • An introduction to metabolomics and its application in life-sciences

    19 - 20 June 2017

    Cambridge, United Kingdom

    Elixir node event
    An introduction to metabolomics and its application in life-sciences https://tess.elixir-europe.org/events/an-introduction-to-metabolomics-and-its-application-in-life-sciences The goal of metabolomics is to identify and quantify the complete biochemical composition of a biological sample. With the increase in genomic, transcriptomic and proteomic information there is a growing need to understand the metabolic phenotype that these genes and proteins ultimately control. The aim of this course is to provide an overview of metabolomics and its applications in life sciences, clinical and environmental settings. Over 2 days we will introduce different techniques used to extract metabolites and analyse samples to collect metabolomic data (such as HPLC or GC-based MS and NMR), present how to analyse such data, how to identify metabolites using online databases and how to map the metabolomic data to metabolic pathways. The course content will predominantly be based on analysing samples from model plant species such as Arabidopsis thaliana but the procedures are transferable to all other organisms, including clinical and environmental settings. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2013503&course-title=An%20introduction%20to%20metabolomics%20and%20its%20application%20in%20life-sciences).'' 2017-06-19 08:30:00 UTC 2017-06-20 17:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Metabolomics Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] This course is aimed at researchers with an interest in metabolomics and its applicationsGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Introduction to RNA-seq and ChIP-seq data analysis

    22 - 23 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to RNA-seq and ChIP-seq data analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-and-chip-seq-data-analysis-83b4f656-ef26-441e-b0ef-f990e78de471 The aim of this course is to familiarize the participants with the primary analysis of datasets generated through two popular high-throughput sequencing (HTS) assays: ChIP-seq and RNA-seq. This course starts with a brief introduction to the transition from capillary to high-throughput sequencing (HTS) and discusses quality control issues, which are common among all HTS datasets. Next, we will present the alignment step and how it differs between the two analysis workflows. Finally, we focus on dataset specific downstream analysis, including peak calling and motif analysis for ChIP-seq and quantification of expression, transcriptome assembly and differential expression analysis for RNA-seq. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2017446&course-title=Introduction%20to%20RNA-seq%20and%20ChIP-seq%20data%20analysis).'' 2017-06-22 08:30:00 UTC 2017-06-23 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq ChIP-seq Data mining Transcriptomics Data visualisation Functional genomics Epigenomics Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Image Analysis for Biologists

    26 - 28 June 2017

    Cambridge, United Kingdom

    Elixir node event
    Image Analysis for Biologists https://tess.elixir-europe.org/events/image-analysis-for-biologists-cd4b3336-bf22-48de-8e32-e4c22f2c4722 This course will focus on computational methods for analysing cellular images and extracting quantitative data from them. The aim of this course is to familiarise the participants with computational image analysis methodologies, and to provide hands-on training in running quantitative analysis pipelines. On day 1 we will introduce principles of image processing and analysis, giving an overview of commonly used algorithms through a series of talks and practicals based on [Fiji](http://fiji.sc/), an extensible open source software package. On day 2, we will describe the open [Icy platform](http://icy.bioimageanalysis.org/) developed at the Institut Pasteur. Icy is a next-generation, user-friendly software offering powerful acquisition, visualisation, annotation and analysis algorithms for 5D bioimaging data, together with unique automation/scripting capabilities (notably via its graphical programming interface) and tight integration with existing software (e.g. ImageJ, Matlab, Micro-Manager). On day 3, we will cover time series processing and cell tracking using [TrackMate](http://imagej.net/TrackMate). In the afternoon, we will present the [Image Data Resource](https://idr.openmicroscopy.org/), an added-value platform that combines data from multiple independent imaging experiments and imaging modalities and integrates them into a single resource for reanalysis in a convenient, scalable form. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2046117&course-title=Image%20Analysis%20for%20Biologists).'' 2017-06-26 08:30:00 UTC 2017-06-28 15:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Data mining Biological imaging Bioinformatics University of Cambridge Bioinformatics Training [] Researchers who are applying or planning to apply image analysis in their researchGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Protein Structure Analysis

    10 - 11 July 2017

    Cambridge, United Kingdom

    Elixir node event
    Protein Structure Analysis https://tess.elixir-europe.org/events/protein-structure-analysis-f4205ed8-96d7-4e6b-83cc-b64ccf449cd8 This course covers data resources and analytical approaches for the discovery and interpretation of biomacromolecular structures. Day 1 focuses on public repositories of structural data ([Protein Data Bank](http://www.ebi.ac.uk/pdbe/) and [Electron Microscopy Data Bank](https://www.ebi.ac.uk/pdbe/emdb/)) and resources for protein analysis and classification ([Pfam](http://pfam.xfam.org/), [InterPro](https://www.ebi.ac.uk/interpro/) and [HMMER](https://www.ebi.ac.uk/Tools/hmmer)). Day 2 covers how to find information about the structure and function of your protein sequence using [CATH](http://www.cathdb.info/), principles of modern state-of-the-art protein modelling with [ Phyre2](http://www.sbg.bio.ic.ac.uk/phyre2/) and methods for predicting the effects of mutations on protein structure and function using the [SAAP family of tools](http://www.bioinf.org.uk/saap/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2052063&course-title=Protein%20Structure%20Analysis).'' 2017-07-10 08:30:00 UTC 2017-07-11 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Protein structure analysis Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Variant Analysis with GATK

    12 - 14 July 2017

    Cambridge, United Kingdom

    Elixir node event
    Variant Analysis with GATK https://tess.elixir-europe.org/events/variant-analysis-with-gatk-f9388ff6-86d9-4162-b17b-e4332acd9850 This workshop will focus on the core steps involved in calling variants with the [Broad’s Genome Analysis Toolkit](https://www.broadinstitute.org/gatk/), using the “Best Practices” developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. In the course of this workshop, we highlight key functionalities such as the germline GVCF workflow for joint variant discovery in cohorts, RNAseq­ specific processing, and somatic variant discovery using MuTect2. We also preview capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery, and we demonstrate the use of pipelining tools to assemble and execute GATK workflows. The workshop is composed of one day of lectures and two days of hands­on training, structured as follows. Day 1: theory and application of the Best Practices for Variant Discovery in high­throughput sequencing data. Day 2 and the morning of Day 3: hands­on exercises on how to manipulate the standard data formats involved in variant discovery and how to apply GATK tools appropriately to various use cases and data types. Day 3 afternoon: hands-on exercises on how to write workflow scripts using WDL, the Broad's new Workflow Description Language, and to execute these workflows locally as well as through a publicly accessible cloud-based service. Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non­human data, and we will address some questions regarding adaptations that are needed for analysis of non­-human data, but we will not go into much detail on those points. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2047357&course-title=Variant%20Analysis%20with%20GATK).'' 2017-07-12 08:30:00 UTC 2017-07-14 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Genomics Data visualisation Data mining Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals 42 workshops_and_courses first_come_first_served HDRUK
  • Basic statistics and data handling

    30 August - 1 September 2017

    Cambridge, United Kingdom

    Elixir node event
    Basic statistics and data handling https://tess.elixir-europe.org/events/basic-statistics-and-data-handling-fda886f9-cdd0-4250-a213-f6ac55f8ff59 This three day course is intended to open doors to applying statistics - whether directly increasing skills and personally undertaking analyses, or by expanding knowledge towards identifying collaborators. The end goal is to drive confident engagement with data analysis and further training - increasing the quality and reliability of interpretation, and putting that interpretation and subsequent presentation into the hands of the researcher. Each day of the course will deliver a mixture of lectures, workshops and hands-on practicals – and will focus on the following specific elements. Day 1 focuses on basic approaches and the computer skills required to do downstream analysis. Covering: Basic skills for data manipulation in R. How to prepare your data effectively. Principles of experimental design and how this influences analysis. On day 2, participants will explore the core concepts of statistics – so that they can begin to see how they can be applied to their own work, and to also help with better critical evaluation of the work of others. Covering: Basic statistics concepts and practice: power, variability, false discovery, t-test, effect size, simulations to understand what a p-value means. On day 3 we will continue to explore core concepts of statistics, focusing on linear regression and multiple testing correction. Course materials are available [here](https://github.com/cambiotraining/stats-intro). This event is supported by the BBSRC Strategic Training Awards for Research Skills (STARS) grant (BB/P022766/1). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2156934&course-title=Basic%20statistics%20and%20data%20handling).'' 2017-08-30 08:30:00 UTC 2017-09-01 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] The course is aimed primarily at mid-career scientists – especially those whose formal education likely included statisticsbut who have not perhaps put this into practice since.Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Data Analysis and Visualisation in R

    6 September 2017

    Cambridge, United Kingdom

    Elixir node event
    Data Analysis and Visualisation in R https://tess.elixir-europe.org/events/data-analysis-and-visualisation-in-r This course introduces some relatively new additions to the R programming language: dplyr and ggplot2. In combination these R packages provide a powerful toolkit to make the process of manipulating and visualising data easy and intuitive. Materials for this course can be found [here](http://bioinformatics-core-shared-training.github.io/r-intermediate/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2166235&course-title=Data%20analysis%20and%20visualisation).'' 2017-09-06 08:30:00 UTC 2017-09-06 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Biology Bioinformatics University of Cambridge Bioinformatics Training [] Existing R users who are not familiar with dplyr and ggplot2Those with programming experience in other languages that want to know what R can offer themGraduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to Scientific Figure Design

    6 October 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Scientific Figure Design https://tess.elixir-europe.org/events/introduction-to-scientific-figure-design-00e6280a-e5ae-406f-9cdb-9da3ee5d0750 This course provides a practical guide to producing figures for use in reports and publications. It is a wide ranging course which looks at how to design figures to clearly and fairly represent your data, the practical aspects of graph creation, the allowable manipulation of bitmap images and compositing and editing of final figures. The course will use a number of different open source software packages and is illustrated with a number of example figures adapted from common analysis tools. Further information and access to the course materials is [here](http://www.bioinformatics.babraham.ac.uk/training.html#figuredesign). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2193694&course-title=Introduction%20to%20Scientific%20Figure%20Design).'' 2017-10-06 08:30:00 UTC 2017-10-06 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Data visualisation Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to RNA-seq and ChIP-seq data analysis

    25 - 26 October 2017

    Cambridge, United Kingdom

    Elixir node event
    Introduction to RNA-seq and ChIP-seq data analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-and-chip-seq-data-analysis-ee3e83c6-b331-43d9-822f-d4e4f865bd8f The aim of this course is to familiarize the participants with the primary analysis of datasets generated through two popular high-throughput sequencing (HTS) assays: ChIP-seq and RNA-seq. This course starts with a brief introduction to the transition from capillary to high-throughput sequencing (HTS) and discusses quality control issues, which are common among all HTS datasets. Next, we will present the alignment step and how it differs between the two analysis workflows. Finally, we focus on dataset specific downstream analysis, including peak calling and motif analysis for ChIP-seq and quantification of expression, transcriptome assembly and differential expression analysis for RNA-seq. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=2197137&course-title=Introduction%20to%20RNA-seq%20and%20ChIP-seq%20data%20analysis).'' 2017-10-25 08:30:00 UTC 2017-10-26 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR RNA-Seq ChIP-seq Data mining Transcriptomics Data visualisation Functional genomics Epigenomics Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
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