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915 events found

City: Bogota  or Copenhagen  or Cambridge  or Norwich  or Rotterdam 

  • EMBL-EBI: Network Analysis - Cytoscape and PSICQUIC

    10 June 2015

    Cambridge, United Kingdom

    Elixir node event
    EMBL-EBI: Network Analysis - Cytoscape and PSICQUIC https://tess.elixir-europe.org/events/embl-ebi-network-analysis-cytoscape-and-psicquic-257b059e-8a14-41cb-9faf-1300168d3f1c This session provides an introduction to Network Analysis using Cytoscape and PSICQUIC [from the European Bioinformatics Institute (EBI)]. It is aimed at biologists and computer scientists wanting to learn the basics of network analysis. Further information for this session is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/Pablo.php). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Network%20Analysis%20-%20Cytoscape%20and%20PSICQUIC_gsls-ebinetworks_2015-06-10_1433312&CourseName=Bioinformatics:%20Network%20Analysis%20-%20Cytoscape%20and%20PSICQUIC&CourseDate=2015-06-10&CourseDuration=1&EventID=1433312).'' 2015-06-10 08:30:00 UTC 2015-06-10 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to Galaxy: RNA-seq and ChIP-seq data analysis

    11 - 12 June 2015

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Galaxy: RNA-seq and ChIP-seq data analysis https://tess.elixir-europe.org/events/introduction-to-galaxy-rna-seq-and-chip-seq-data-analysis Galaxy (http://galaxyproject.org/) is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share bioinformatic analyses. The goal of this course is to demonstrate how to use Galaxy to explore RNA-seq data, for expression profiling, and ChIP-seq data, to assess genomic DNA binding sites. You will learn how to perform analysis in Galaxy, and then how to share, repeat, and reproduce your analyses. The timetable for this event can be found [here](https://drive.google.com/file/d/0B5BzNXp93Gp5cmlIYmJPUzltZ0U/view?usp=sharing). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Introduction%20to%20Galaxy%20:%20RNAseq%20and%20ChIPseq%20data%20analysis_gsls-galaxyRNAseq_1429597_2015.06.11-12&CourseName=Introduction%20to%20Galaxy%20:%20RNAseq%20and%20ChIPseq%20data%20analysis&CourseDate=2015.06.11-12&CourseDuration=2&EventID=1429597).'' 2015-06-11 08:30:00 UTC 2015-06-12 15:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • ElixirUK - Software Carpentry: A Practical Introduction to Good Programming Practices

    15 - 16 June 2015

    Cambridge, United Kingdom

    Elixir node event
    ElixirUK - Software Carpentry: A Practical Introduction to Good Programming Practices https://tess.elixir-europe.org/events/elixiruk-software-carpentry-a-practical-introduction-to-good-programming-practices This course is aimed at researchers who want to learn core skills and best practices for scientific computing. It will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems. The course covers the core skills needed to be productive in a small research team: *Unix command line (and how to automate repetitive tasks); *Python or R (and how to grow a program in a modular, testable way); and *version control with Git (and how to track and share work efficiently). Further information is available [here](http://swc-cambridge-2015.github.io/). Applicants for this course are requested to complete a [pre-course survey](http://goo.gl/forms/KqO6bLCiEF). This will be used to tailor the course content to the audience research interests and background. This event is organized in collaboration with [Software Carpentry](http://software-carpentry.org/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=ElixirUK%20-%20Software%20Carpentry:%20A%20Practical%20Introduction%20to%20Good%20Programming%20Practices_bioinfo-bootpy_15-16.06.2015_1393220&CourseName=ElixirUK%20-%20Software%20Carpentry:%20A%20Practical%20Introduction%20to%20Good%20Programming%20Practices&CourseDate=15-16.06.2015&CourseDuration=2&EventID=1393220).'' 2015-06-15 08:30:00 UTC 2015-06-16 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Whole Exome Sequencing and RNA-sequence data analysis

    17 - 19 June 2015

    Cambridge, United Kingdom

    Elixir node event
    Whole Exome Sequencing and RNA-sequence data analysis https://tess.elixir-europe.org/events/whole-exome-sequencing-and-rna-sequence-data-analysis-13ed723f-0ac1-49b0-aaec-376b75ddc198 This course covers state-of-the-art tools and methods for NGS RNA-seq and exome variant data analysis, which are of major relevance in today's genomic and gene expression studies. It is oriented to experimental researchers, post-doctoral and PhD students who want to learn about the state-of-the-art of genomic variant and transcriptomics data analysis methodologies and carry out their own analysis. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/Ximo.php). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Whole%20Exome%20Sequencing%20and%20RNA-sequence%20data%20analysis_gsls-ximo_2015.06.17-19_1430553&CourseName=Bioinformatics:%20Whole%20Exome%20Sequencing%20and%20RNA-sequence%20data%20analysis&CourseDate=2015.06.17-19&CourseDuration=3&EventID=1430553).'' 2015-06-17 08:30:00 UTC 2015-06-19 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Online database resources for non-coding RNA

    17 June 2015

    Cambridge, United Kingdom

    Elixir node event
    Online database resources for non-coding RNA https://tess.elixir-europe.org/events/online-database-resources-for-non-coding-rna This one-day course focuses on four online data resources for non-coding RNAs:RNAcentral, a comprehensive resource of non-coding RNA sequences: miRBase, which is dedicated to microRNAs; GENCODE, which supplies detailed expertly curated gene sets for human and mouse; and Rfam, which annotates genomes with matches to non-coding RNA families. 2015-06-17 09:00:00 UTC 2015-06-17 09:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Johanna Langrish [] [] [] [] HDRUK
  • Gene expression data analysis using R: How to make sense out of your RNA-Seq/microarray data

    22 - 26 June 2015

    Rotterdam, Netherlands

    Gene expression data analysis using R: How to make sense out of your RNA-Seq/microarray data https://tess.elixir-europe.org/events/gene-expression-data-analysis-using-r-how-to-make-sense-out-of-your-rna-seq-microarray-data 2015-06-22 01:00:00 UTC 2015-06-26 01:00:00 UTC Rotterdam, Netherlands Rotterdam Netherlands Genomics Bioinformatics [] [] [] workshops_and_courses [] []
  • Using the Ensembl Genome Browser

    22 June 2015

    Cambridge, United Kingdom

    Elixir node event
    Using the Ensembl Genome Browser https://tess.elixir-europe.org/events/using-the-ensembl-genome-browser-84005d81-d39d-43ca-a298-a20fb588474c The [Ensembl Project](http://www.ensembl.org) provides a comprehensive and integrated source of annotation of, mainly vertebrate, genome sequences. This one-day workshop offers a comprehensive practical introduction to the use of the Ensembl genome browser as well as essential background information. This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes. There may be some tools and topics that do not apply to non-vertebrates; if you have any questions about this, please email the Ensembl Outreach Project Leader, [mailto:emily@ebi.ac.uk Emily Perry]. Applicants for this course are requested to complete a [pre-course survey](https://www.surveymonkey.com/s/8L2C79F). This will be used to tailor the course content to the audience research interests and background. Further information is available [here](http://www.ebi.ac.uk/training/workshop/ensembl-browser-workshop-cambridge-june-2015). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Bioinformatics:%20Using%20the%20Ensembl%20Genome%20Browser_bioinfo-ensbrow_2015.06.22_1438721&CourseName=Bioinformatics:%20Using%20the%20Ensembl%20Genome%20Browser&CourseDate=2015.06.22&CourseDuration=1&EventID=1438721).'' 2015-06-22 08:30:00 UTC 2015-06-22 16:00:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Joint EMBL-EBI/Wellcome Trust Summer School in Bioinformatics

    22 - 26 June 2015

    Cambridge, United Kingdom

    Elixir node event
    Joint EMBL-EBI/Wellcome Trust Summer School in Bioinformatics https://tess.elixir-europe.org/events/joint-embl-ebi-wellcome-trust-summer-school-in-bioinformatics This summer school will provide an introduction to the use of bioinformatics in biological research using publicly available data resources and tools. 2015-06-22 09:00:00 UTC 2015-06-26 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Lucy Criddle [] [] [] [] HDRUK
  • Ensembl Browser Workshop - Cambridge June 2015

    22 June 2015

    Cambridge, United Kingdom

    Elixir node event
    Ensembl Browser Workshop - Cambridge June 2015 https://tess.elixir-europe.org/events/ensembl-browser-workshop-cambridge-june-2015 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2015-06-22 09:00:00 UTC 2015-06-22 00:00:00 UTC University of Cambridge, Cambridge, United Kingdom University of Cambridge Cambridge United Kingdom CB2 3AR [] Denise Carvalho-Silva [] [] [] [] HDRUK
  • Live-Cell Imaging

    23 - 25 June 2015

    Norwich, United Kingdom

    Live-Cell Imaging https://tess.elixir-europe.org/events/live-cell-imaging 2015-06-23 01:00:00 UTC 2015-06-25 01:00:00 UTC Cambridge Healthtech Institute The Fairmont Hotel, Norwich, United Kingdom The Fairmont Hotel Norwich United Kingdom Systems biology [] [] [] meetings_and_conferences [] []
  • An Introduction to Solving Biological Problems with R

    23 - 24 June 2015

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with R https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-32098b8a-1588-4fac-b4ce-d30f358ecc4d This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/R_Intro.php). The course website providing links to the course materials is [here](http://logic.sysbiol.cam.ac.uk/teaching/Rcourse/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R_bioinfo-rintro_23-24.06.2015_1503322&CourseName=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R&CourseDate=23-24.06.2015&CourseDuration=2&EventID=1503322).'' 2015-06-23 08:30:00 UTC 2015-06-24 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to genome variation analysis using NGS

    29 - 30 June 2015

    Cambridge, United Kingdom

    Elixir node event
    Introduction to genome variation analysis using NGS https://tess.elixir-europe.org/events/introduction-to-genome-variation-analysis-using-ngs-ba188d2a-ba42-441a-9313-8c0f56e659cb This course provides an introduction to the analysis of human genome sequence variation with next generation sequencing data (NGS), including: *an introduction to genetic variation as well as data formats and analysis workflows commonly used in NGS data analysis; *an overview of available analytical tools and discussion of their limitations; and *hands-on experience with common computational workflows for analysing genome sequence variation using bioinformatics and computational genomics approaches. A draft agenda can be found [here](https://drive.google.com/file/d/0B5BzNXp93Gp5cmUxbjMzNldBZ1E/view?usp=sharing) Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Introduction%20to%20genome%20variation%20analysis%20using%20NGS_bioinfo-var_29-30.06.2015_1452026&CourseName=Introduction%20to%20genome%20variation%20analysis%20using%20NGS&CourseDate=29-30.06.2015&CourseDuration=2&EventID=1452026).'' 2015-06-29 08:30:00 UTC 2015-06-30 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Exploring Plant Variation Data

    1 - 3 July 2015

    Cambridge, United Kingdom

    Elixir node event
    Exploring Plant Variation Data https://tess.elixir-europe.org/events/exploring-plant-variation-data This workshop will focus on current developments in plant data resources at transPLANT partner sites (www.transplantdb.eu), with a special reference on plant genomic variation data, re-sequencing projects GWAS analyses. 2015-07-01 09:00:00 UTC 2015-07-03 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Allison Beaumont [] [] [] [] HDRUK
  • iPlant Tools & Services Workshop

    2 - 3 July 2015

    Norwich, United Kingdom

    iPlant Tools & Services Workshop https://tess.elixir-europe.org/events/iplant-tools-services-workshop 2015-07-02 01:00:00 UTC 2015-07-03 01:00:00 UTC TGAC The Genome Analysis Centre (TGAC), Norwich, United Kingdom The Genome Analysis Centre (TGAC) Norwich United Kingdom Bioinformatics [] [] [] workshops_and_courses [] []
  • An Introduction to MATLAB for biologists

    13 - 14 July 2015

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to MATLAB for biologists https://tess.elixir-europe.org/events/an-introduction-to-matlab-for-biologists-5b919cf6-cf6c-4e48-a3fd-d7af89aeebfb This course aims to give you an introduction to the basics of Matlab. During the two day course we will use a practical based approach to give you the confidence to start using Matlab in your own work. In particular we will show you how to write your own scripts and functions and how to use pre-written functions. We will also explore the many ways in which help is available to Matlab users. In addition we will cover basic computer programming in Matlab to enable you to write more efficient scripts. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/MATLAB.php). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20MATLAB_bioinfo-MATLAB_13-14.07.2015_1481644&CourseName=An%20Introduction%20to%20MATLAB&CourseDate=13-14.07.2015&CourseDuration=2&EventID=1481644).'' 2015-07-13 08:30:00 UTC 2015-07-14 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An Introduction to Solving Biological Problems with Python

    20 - 21 July 2015

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with Python https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-python-98d8907c-8e5d-4741-96f1-78e7d30973b5 This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/Python.php). The course website providing links to the course materials is [here](http://pycam.github.io). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python_bioinfo-python_20-21.07.2015_1507269&CourseName=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python&CourseDate=20-21.07.2015&CourseDuration=2&EventID=1507269).'' 2015-07-20 08:30:00 UTC 2015-07-21 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Cancer Genomics

    20 - 24 July 2015

    Cambridge, United Kingdom

    Elixir node event
    Cancer Genomics https://tess.elixir-europe.org/events/cancer-genomics-e8f6e277-5d58-41f1-be13-ea7ac6b45749 This course will focus on the analysis of data from genomic studies of Cancer. 2015-07-20 12:00:00 UTC 2015-07-24 17:30:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Johanna Langrish [] [] [] [] HDRUK
  • Analysis of DNA Methylation using Sequencing

    24 July 2015

    Cambridge, United Kingdom

    Elixir node event
    Analysis of DNA Methylation using Sequencing https://tess.elixir-europe.org/events/analysis-of-dna-methylation-using-sequencing-d004a299-59e5-4b8f-ad9d-320580300438 This course will cover all aspects of the analysis of DNA methylation using sequencing, including primary analysis, mapping and quality control of BS-Seq data, common pitfalls and complications. It will also include exploratory analysis of Methylation, looking at different methods of quantitation, and a variety of ways of looking more widely at the distribution of methylation over the genome. Finally the course will look at statistical methods to predict differential methylation. The course will be comprised of a mixture of theoretical lectures and practicals covering a range of different software packages. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=The%20Analysis%20of%20DNA%20Methylation%20using%20Sequencing_bioinfo-methylation_24.07.2015_1393517&CourseName=The%20Analysis%20of%20DNA%20Methylation%20using%20Sequencing&CourseDate=24.07.2015&CourseDuration=1&EventID=1393517).'' 2015-07-24 08:30:00 UTC 2015-07-24 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Introduction to RNA-seq and ChIP-seq data analysis

    13 - 14 August 2015

    Cambridge, United Kingdom

    Elixir node event
    Introduction to RNA-seq and ChIP-seq data analysis https://tess.elixir-europe.org/events/introduction-to-rna-seq-and-chip-seq-data-analysis-0918bbc3-bc4b-4ff3-a924-9bdf76d6d2f2 The aim of this course is to familiarise the participants with the primary analysis of datasets generated through two popular high-throughout sequencing (HTS) assays: ChIP-seq and RNA-seq. This course starts with a brief introduction to the transition from capillary to high-throughput sequencing and discusses quality control issues, which are common among all NGS datasets. Next, we will present the alignment step and how it differs between the two analysis workflows. Finally, we focus on dataset specific downstream analysis, including peak calling and motif analysis for ChIP-seq and quantification of expression, transcriptome assembly and differential expression analysis for RNA-seq. The timetable for this event can be found [here.](https://drive.google.com/file/d/0B5BzNXp93Gp5YjdGV3JsZEJzOUk/view?usp=sharing) Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Introduction%20to%20RNA-seq%20and%20ChIP-seq%20data%20analysis_bioinfo-RNA-seq_13-14.08.2015_1483027&CourseName=Introduction%20to%20RNA-seq%20and%20ChIP-seq%20data%20analysis&CourseDate=13-14.08.2015&CourseDuration=2&EventID=1483027).'' 2015-08-13 08:30:00 UTC 2015-08-14 15:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Analysis of mapped NGS data with SeqMonk

    19 August 2015

    Cambridge, United Kingdom

    Elixir node event
    Analysis of mapped NGS data with SeqMonk https://tess.elixir-europe.org/events/analysis-of-mapped-ngs-data-with-seqmonk-132e722b-0357-4cbe-a72f-2766ec75586f [SeqMonk](http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/) is a graphical program for the visualisation and analysis of large mapped sequencing datasets such as ChIP-Seq, RNA-Seq, and BS-Seq. The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets. This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides. Further information is available [here](http://www.bioinformatics.babraham.ac.uk/training.html#seqmonk). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Analysing%20mapped%20NGS%20data%20with%20SeqMonk_bioinfo-seqmonk_19.08.2015_1503940&CourseName=Analysing%20mapped%20NGS%20data%20with%20SeqMonk&CourseDate=19.08.2015&CourseDuration=1&EventID=1503940).'' 2015-08-19 08:30:00 UTC 2015-08-19 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An Introduction to Solving Biological Problems with R

    20 - 21 August 2015

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with R https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-6304196a-d5b1-456e-986b-d15313a146af This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. Further information is available [here](http://ruddles.bio.cam.ac.uk/~dpjudge/Descriptions/R_Intro.php). The course website providing links to the course materials is [here](http://logic.sysbiol.cam.ac.uk/teaching/Rcourse/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R_bioinfo-rintro_20-21.08.2015_1528894&CourseName=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R&CourseDate=20-21.08.2015&CourseDuration=2&EventID=1528894).'' 2015-08-20 08:30:00 UTC 2015-08-21 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • ElixirUK: Data Carpentry

    10 - 11 September 2015

    Cambridge, United Kingdom

    Elixir node event
    ElixirUK: Data Carpentry https://tess.elixir-europe.org/events/elixiruk-data-carpentry In many domains of research the rapid generation of large amounts of data is fundamentally changing how research is done. The deluge of data presents great opportunities, but also many challenges in managing, analyzing and sharing data. Data Carpentry workshops are designed to teach basic concepts, skills and tools for working more effectively with data. The workshop is aimed at researchers in the life sciences at all career stages and is designed for learners with little to no prior knowledge of programming, shell scripting, or command line tools. Workshop Learning objectives & programme *How to use spreadsheet programs (such as Excel) more effectively, and the limitations of such programs *Getting data out of spreadsheets and into more powerful tools (R) *Data management and manipulation *Data visualization *Workflows and automating repetitive tasks, in particular using the command line shell This event is organized in collaboration with [Data Carpentry](http://datacarpentry.org/). Corse materials are available [here](http://lgatto.github.io/2015-09-10-CAM/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=Data%20Carpentry_bioinfo-datacarp_10-11.09.2015_1507442&CourseName=Data%20Carpentry&CourseDate=10-11.09.2015&CourseDuration=2&EventID=1507442).'' 2015-09-10 08:30:00 UTC 2015-09-11 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • An Introduction to Solving Biological Problems with Python

    14 - 15 September 2015

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with Python https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-python-8def1e99-6a9b-4222-bf6a-9b880b0c5bf7 This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. The course website providing links to the course materials is [here](http://pycam.github.io). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python_bioinfo-python_14-15.09.2015_1530918&CourseName=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python&CourseDate=14-15.09.2015&CourseDuration=2&EventID=1530918).'' 2015-09-14 08:30:00 UTC 2015-09-15 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Postdocs and Staff members from the University of Cambridge Institutions and other external Institutions or individuals workshops_and_courses [] []
  • An Introduction to Solving Biological Problems with Python

    14 - 15 September 2015

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with Python https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-python This course provides a practical introduction to the writing of Python programs for the complete novice. Participants are lead through the core aspects of Python illustrated by a series of example programs. Upon completion of the course, attentive participants will be able to write simple Python programs from scratch and to customize more complex code to fit their needs. The course website providing links to the course materials is [here](http://pycam.github.io). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python_bioinfo-python_14-15.09.2015_1530918&CourseName=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20Python&CourseDate=14-15.09.2015&CourseDuration=2&EventID=1530918).'' 2015-09-14 08:30:00 UTC 2015-09-15 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Ensembl API workshops, EBI, September 2015

    14 - 17 September 2015

    Cambridge, United Kingdom

    Elixir node event
    Ensembl API workshops, EBI, September 2015 https://tess.elixir-europe.org/events/ensembl-api-workshops-ebi-september-2015 Work with the Ensembl developers to master the Ensembl Perl APIs and flexibly access genome-wide data, such as genes, variants, regulatory features, homologues and alignments. 2015-09-14 09:00:00 UTC 2015-09-17 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Emily Perry [] [] [] [] HDRUK
  • Metagenomics Bioinformatics

    14 - 16 September 2015

    Cambridge, United Kingdom

    Elixir node event
    Metagenomics Bioinformatics https://tess.elixir-europe.org/events/metagenomics-bioinformatics-2c6d4401-2d0e-45cf-b156-41337698c9f1 This course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data, including both marker gene and whole gene shotgun (WGS) approaches. 2015-09-14 09:00:00 UTC 2015-09-16 00:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] Frank O’Donnell [] [] [] [] HDRUK
  • Interactions & Pathways - Reactome

    15 September 2015

    Cambridge, United Kingdom

    Elixir node event
    Interactions & Pathways - Reactome https://tess.elixir-europe.org/events/interactions-pathways-reactome-d0dafbbf-e167-4d74-b13f-5f0f2868fcc5 This workshop will give an introduction to the Reactome pathway database website and analysis tools, using short presentations and practical hands-on exercises. 2015-09-15 09:30:00 UTC 2015-09-15 13:00:00 UTC University of Cambridge, Cambridge, United Kingdom University of Cambridge Cambridge United Kingdom CB2 3AR [] Zaria Byer [] [] [] [] HDRUK
  • R object-oriented programming and package development

    16 September 2015

    Cambridge, United Kingdom

    Elixir node event
    R object-oriented programming and package development https://tess.elixir-europe.org/events/r-object-oriented-programming-and-package-development The course will teach intermediate R object-oriented programming and how to build a fully functional R package. The [course page](http://logic.sysbiol.cam.ac.uk/teaching/advancedR/) includes slides and handouts; other relevant teaching materials are available [here](http://lgatto.github.io/TeachingMaterial/)) and the sequences example package used as template in the course can be found [here](http://cran.r-project.org/web/packages/sequences/index.html). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to Book register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=R%20object-oriented%20programming%20and%20package%20development_bioinfo-radv_1445283_2015-09-16&CourseName=R%20object-oriented%20programming%20and%20package%20development&CourseDate=2015-09-16&CourseDuration=1&EventID=1445283).'' 2015-09-16 08:30:00 UTC 2015-09-16 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Medical Immunology

    17 September - 26 November 2015

    Rotterdam, Netherlands

    Medical Immunology https://tess.elixir-europe.org/events/medical-immunology 2015-09-17 01:00:00 UTC 2015-11-26 00:00:00 UTC Rotterdam, Netherlands Rotterdam Netherlands Immunology [] [] [] workshops_and_courses [] []
  • An Introduction to Solving Biological Problems with R

    17 - 18 September 2015

    Cambridge, United Kingdom

    Elixir node event
    An Introduction to Solving Biological Problems with R https://tess.elixir-europe.org/events/an-introduction-to-solving-biological-problems-with-r-f6753f46-d38b-4ca7-b5ec-0a5096758884 This course provides an introduction to the R programming language and software environment for statistical computing and graphics. A variety of examples with a biological theme will be presented. The course website providing links to the course materials is [here](http://cambiotraining.github.io/r-intro/). Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register Interest by linking [here](http://marstons.bio.cam.ac.uk/course-booking/?CourseID=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R_bioinfo-rintro_17-18.09.2015_1539928&CourseName=An%20Introduction%20to%20Solving%20Biological%20Problems%20with%20R&CourseDate=17-18.09.2015&CourseDuration=2&EventID=1539928).'' 2015-09-17 08:30:00 UTC 2015-09-18 16:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR University of Cambridge Bioinformatics Training [] Postdocs and Staff members from the University of Cambridge Institutions and other external Institutions or individuals workshops_and_courses [] []
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