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20 events found

Event types: Meetings and conferences 

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City: Bogota  or Canberra  or University of Melbourne  or Stockholm  or Basel 

  • IEEE eScience 2011 Workshop on Computing Advances in Life Sciences

    5 - 8 December 2011

    Stockholm, Sweden

    IEEE eScience 2011 Workshop on Computing Advances in Life Sciences https://tess.elixir-europe.org/events/ieee-escience-2011-workshop-on-computing-advances-in-life-sciences 2011-12-05 00:00:00 UTC 2011-12-08 00:00:00 UTC SeRC Swedish e-Science Research Centre Stockholm City Conference Centre/Norra Latin, Stockholm, Sweden Stockholm City Conference Centre/Norra Latin Stockholm Sweden [] [] [] meetings_and_conferences [] []
  • Proteomics, Interactomes

    7 - 12 May 2012

    Stockholm, Sweden

    Proteomics, Interactomes https://tess.elixir-europe.org/events/proteomics-interactomes 2012-05-07 00:00:00 UTC 2012-05-12 00:00:00 UTC Keystone Symposia Clarion Hotel Sign, Stockholm, Sweden Clarion Hotel Sign Stockholm Sweden Proteomics Bioinformatics [] [] [] meetings_and_conferences [] Interactomes
  • Bioinformatics 2012

    12 - 15 June 2012

    Stockholm, Sweden

    Bioinformatics 2012 https://tess.elixir-europe.org/events/bioinformatics-2012 2012-06-12 00:00:00 UTC 2012-06-15 00:00:00 UTC Society for Bioinformatics in the Northern Europe Karolinska Instututet, Stockholm, Sweden Karolinska Instututet Stockholm Sweden Bioinformatics [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • 6th Workshop on Machine Learning in Systems Biology

    9 - 10 September 2012

    Basel, Switzerland

    6th Workshop on Machine Learning in Systems Biology https://tess.elixir-europe.org/events/6th-workshop-on-machine-learning-in-systems-biology 2012-09-09 00:00:00 UTC 2012-09-10 00:00:00 UTC Workshop at ECCB2012 Congress Center Basel, Basel, Switzerland Congress Center Basel Basel Switzerland Systems biology [] [] [] meetings_and_conferences [] OtherEventsISCB
  • European Conference on Computational Biology 2012

    9 - 12 September 2012

    Basel, Switzerland

    European Conference on Computational Biology 2012 https://tess.elixir-europe.org/events/european-conference-on-computational-biology-2012 2012-09-09 00:00:00 UTC 2012-09-12 00:00:00 UTC SIB Congress Center Basel, Basel, Switzerland Congress Center Basel Basel Switzerland Bioinformatics [] [] [] meetings_and_conferences [] []
  • AIMM2012

    10 September 2012

    Basel, Switzerland

    AIMM2012 https://tess.elixir-europe.org/events/aimm2012 2012-09-10 00:00:00 UTC 2012-09-10 00:00:00 UTC European Conference on Computational Biology Congress Center Basel, Basel, Switzerland Congress Center Basel Basel Switzerland Bioinformatics [] [] [] meetings_and_conferences [] OtherEventsISCB
  • Predictive Science in Drug Development and Clinical Practice

    12 - 13 April 2013

    Stockholm, Sweden

    Predictive Science in Drug Development and Clinical Practice https://tess.elixir-europe.org/events/predictive-science-in-drug-development-and-clinical-practice 2013-04-12 00:00:00 UTC 2013-04-13 00:00:00 UTC Swedish Academy of Pharmaceutical Sciences Stockholm, Sweden Stockholm Sweden Pharmacology [] [] [] meetings_and_conferences [] []
  • Genetic Variation and Human Health

    4 - 5 July 2013

    Basel, Switzerland

    Genetic Variation and Human Health https://tess.elixir-europe.org/events/genetic-variation-and-human-health 2013-07-04 01:00:00 UTC 2013-07-05 01:00:00 UTC SIB Basel, Switzerland Basel Switzerland Genomics Bioinformatics [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • World Congress on NeuroTherapeutics: Dilemmas, Debates & Discussions

    4 - 7 July 2014

    Basel, Switzerland

    World Congress on NeuroTherapeutics: Dilemmas, Debates & Discussions https://tess.elixir-europe.org/events/world-congress-on-neurotherapeutics-dilemmas-debates-discussions 2014-07-04 01:00:00 UTC 2014-07-07 01:00:00 UTC CongressMed Basel, Switzerland Basel Switzerland Pharmacology Medicine [] [] [] meetings_and_conferences [] neuroscience
  • EMBO Workshop on a: Systems-Level View of Cytoskeletal Function Multi-scale approaches for understanding cell architecture and dynamics

    27 - 31 October 2014

    Stockholm, Sweden

    EMBO Workshop on a: Systems-Level View of Cytoskeletal Function Multi-scale approaches for understanding cell architecture and dynamics https://tess.elixir-europe.org/events/embo-workshop-on-a-systems-level-view-of-cytoskeletal-function-multi-scale-approaches-for-understanding-cell-architecture-and-dynamics 2014-10-27 00:00:00 UTC 2014-10-31 00:00:00 UTC EBMO Stockholm, Sweden Stockholm Sweden Systems biology [] [] [] meetings_and_conferences [] []
  • The Human Proteome

    24 - 29 April 2015

    Stockholm, Sweden

    The Human Proteome https://tess.elixir-europe.org/events/the-human-proteome 2015-04-24 01:00:00 UTC 2015-04-29 01:00:00 UTC Stockholm, Sweden Stockholm Sweden Proteomics [] [] [] meetings_and_conferences [] []
  • [BC]2 Basel Computational Biology Conference

    7 - 10 June 2015

    Basel, Switzerland

    [BC]2 Basel Computational Biology Conference https://tess.elixir-europe.org/events/bc-2-basel-computational-biology-conference 2015-06-07 01:00:00 UTC 2015-06-10 01:00:00 UTC SIB Basel, Switzerland Basel Switzerland Bioinformatics [] [] [] meetings_and_conferences [] ISCBOtherEvents
  • BIO-Europe Spring 2016

    4 - 6 April 2016

    Stockholm, Sweden

    BIO-Europe Spring 2016 https://tess.elixir-europe.org/events/bio-europe-spring-2016 2016-04-04 01:00:00 UTC 2016-04-06 01:00:00 UTC Stockholm, Sweden Stockholm Sweden Pharmacology Medicine [] [] [] meetings_and_conferences [] []
  • B Cells at the Intersection of Innate and Adaptive Immunity

    29 May - 2 June 2016

    Stockholm, Sweden

    B Cells at the Intersection of Innate and Adaptive Immunity https://tess.elixir-europe.org/events/b-cells-at-the-intersection-of-innate-and-adaptive-immunity 2016-05-29 01:00:00 UTC 2016-06-02 01:00:00 UTC Stockholm, Sweden Stockholm Sweden Immunology [] [] [] meetings_and_conferences [] []
  • Detecting Mutations with Short-Read Sequencing

    15 July 2016

    Canberra, Australia

    Detecting Mutations with Short-Read Sequencing https://tess.elixir-europe.org/events/detecting-mutations-with-short-read-sequencing Reed A. Cartwright, Arizona State University Studying the process of de novo mutation from deep-sequencing of related samples is a difficult task. Because de novos are rare, artifacts generated by experimental and biological error tend to be more common than true positives. While de novos can be identified through validation, this is a slow process. In order to estimate mutation rates on large datasets in an automated way, we need to develop new probabilistic models that can handle sources of false positives. In this talk I will be discussing new computational methods to detect de novo mutations and their application to three different systems: human trios, ciliate mutation accumulation experiments, and yellow box eucalyptus. TIC Techniques In Computational Genomics A community of researchers engaged in, or dependent on, computational analysis of genomic data Weekly seminars by volunteers Drop-in sessions/round-table discussions convened by the Genome Discovery Unit (GDU) Venue alternates between JCSMR and RSB, ANU. To be added to TIC email list please contact marcin.adamski@anu.edu.au 2016-07-15 09:00:00 UTC 2016-07-15 00:00:00 UTC Australian National University Canberra, Australia Canberra Australia Computational biology Bioinformatics [] [] [] meetings_and_conferences [] BioinformaticsABR
  • Galaxy Australasia Meeting (GAMe) 2017

    3 - 9 February 2017

    University of Melbourne, Australia

    Galaxy Australasia Meeting (GAMe) 2017 https://tess.elixir-europe.org/events/galaxy-australasia-meeting-game-2017 The Galaxy Australasia Meeting will bring together biomedical researchers, bioinformaticians, infrastructure providers, and data producers from across Australia and Asia. GAMe 2017 spans a week and includes a two day conference, one day of training for researchers, and four days of training for Galaxy administrators. 2017-02-03 09:00:00 UTC 2017-02-09 00:00:00 UTC VLSCI - University of Melbourne Lab-14, University of Melbourne, Australia Lab-14 University of Melbourne Australia Software engineering Computational biology Bioinformatics [] [] [] meetings_and_conferences [] ABRBioinformaticslifescience
  • ELIXIR HoNs meeting

    13 September 2017

    Basel, Switzerland

    ELIXIR HoNs meeting https://tess.elixir-europe.org/events/elixir-hons-meeting ELIXIR Heads of Nodes will meet for a one day meeting to held alongside the [BC]2 conference in Basel on 13 September 2017. A full agenda and documents for the meeting will be made available to participants in due course.   2017-09-13 09:00:00 UTC 2017-09-13 00:00:00 UTC Basel, Switzerland Basel Switzerland [] [] [] meetings_and_conferences [] []
  • Tools for reproducible research - ISMB/ECCB 2019

    21 July 2019

    Basel, Switzerland

    Tools for reproducible research - ISMB/ECCB 2019 https://tess.elixir-europe.org/events/tools-for-reproducible-research-0ed30b48-9c67-48f5-8616-6ca21c78c509 Educators: Bjoern Grüning (RBC), Johannes Köster, Devon Ryan Date: 21.07.2019 Location: ISMB/ECCB Basel Content: The typical data analyst must simultaneously juggle multiple projects, each having its own duration and software requirements. As few analysts have any formal training on structuring or even writing the code necessary to perform an analysis, it is unsurprising that the iterative analytic process can produce a wide assortment of almost identically named files (e.g., “final_results.txt”, “final_results.version2.txt”, “final_results.really_final.txt”), all with unclear origins and produced with a hodge-podge of similarly poorly named scripts. The near impossibility of tracing a results file to the exact process that produced it creates untold difficulties both when it comes time to publish results as well as when planning subsequent experiments months or years later (afterall, which of the “final_results” files was really the “right one”?). These issues are further compounded by software paths and other similar assumptions being hard-coded into scripts, preventing easy analysis replication elsewhere. Performing analyses in a reproducible and traceable manner is clearly needed to combat such problems. Schedule Overview 2:00 - 2:10 pm Installing conda and snakeMake 2:10 - 2:30 pm Intro to conda and bioconda (slides) 2:30 - 3:30 pm Hands-on Session: creating conda envs and installing packages from bioconda repo This practical would require installing hisat, samtools and deeptools via bioconda 3:30 - 4:00 pm Hands-on Session: writing conda recipes Topics in BioVis (including examples) Visualization of sequences, macromolecules, omics data, biological networks 4:00 - 4:15 am Coffee Break 4:15 - 4:35 pm Intro to snakemake Specific tools for visualizing large-scale biological data 4:35 - 6:00 Hands On Session: Writing a snakemake workflow wrapper for mapping, indexing and creating coverage files Learning goals: In this hands-on tutorial, we demonstrate how Conda can be used to deploy specific software versions easily, reproducibly, and without administrator credentials. Moreover, we demonstrate how Conda’s ability to create isolated software environments helps to avoid side-effects between different analyses or different steps of the same analysis. Attendees will also learn how to create conda recipes themselves, so they can contribute new packages to projects such as Bioconda. We further demonstrate how Snakemake can be used in combination with Conda and Containers to create reproducible analysis workflows and execute them on any platform from workstations to clusters and the cloud. Finally, using snakePipes as an example, we demonstrate how Conda and Snakemake can be used to define reproducible and flexible workflows for complex genomics analysis. Prerequisites: - Laptops with Linux or MacOS - Pre-installed Miniconda - install via miniconda : https://conda.io/miniconda.html - Expected audience should have basic familiarity with python, git and the command line. Keywords: Conda, Bioconda, snakemake, Bioconductor, reproducible research Tools: Conda, Bioconda, snakemake, 2019-07-21 09:00:00 UTC 2019-07-21 17:00:00 UTC de.NBI Basel, Basel, Switzerland Basel Basel Basel-Stadt Switzerland [] [] [] meetings_and_conferences [] []
  • ISMB/ECCB 2019

    21 - 25 July 2019

    Basel, Switzerland

    ISMB/ECCB 2019 https://tess.elixir-europe.org/events/ismb-eccb-2019 ISMB/ECCB 2019 is the largest and most high profile annual meeting of scientists working in computational biology and provides an intense multidisciplinary forum for disseminating the latest developments in computational tools for data driven biological research. ELIXIR will be present at this year's ISMB/ECCB 2019 conference with three dedicated Tech Tracks on Monday 22 July and a Special Session on Scalable Plant-Research in Cloud Environments on Wednesday 24 July. ELIXIR will also be have a booth (booth numbers 23 and 24) in the exhibition area with information about our services including Global Alliance, Galaxy, Plants, TeSS and Beacons.  Further details about the conference, including how to register, can be found on the ISMB/ECCB 2019 website. 2019-07-21 10:00:00 UTC 2019-07-25 17:00:00 UTC Congress Center Basel, Basel, Switzerland Congress Center Basel Basel Switzerland 4058 [] [] [] meetings_and_conferences [] []
  • ELIXIR Beacons (at ISMB / ECCB)

    22 July 2019

    Basel, Switzerland

    ELIXIR Beacons (at ISMB / ECCB) https://tess.elixir-europe.org/events/elixir-beacons-at-ismb-eccb This workshop will demonstrate the Beacon API, a data discovery protocol that allows users to determine the presence or absence of a particular allele in a dataset, without disclosing any further data differentiating the individuals it contains. The ELIXIR Beacons project is a Driver Project of the Global Alliance for Genomics and Health that provides a simple way to federate data discoverability. The ELIXIR Beacons protocol can allows any variation data back end to be connected to the ELIXIR Beacons network which can then be queried to ask questions like _'does this dataset have any information about allele 'X' at position 'Y' in the genome?'_. This workshop will show how recent extensions to the Beacon API has extended its functionality by adding support for additional types of genomic variants and improved metadata support. Additionally we will also demonstrate the accompanying ELIXIR Beacon reference implementation which utilises risk mitigation strategies by integrating the ELIXIR Authorization and Authentication Infrastructure (AAI), demonstrating to data owners how to light Beacons at different tiers of data access: open, registered, or controlled. 2019-07-22 14:00:00 UTC 2019-07-22 16:00:00 UTC Gary Saunders Congress Center Basel, Basel, Switzerland Congress Center Basel Basel Switzerland [] Gary Saunders <gary.saunders@elixir-europe.org>, Frédéric Haziza <frederic.haziza@crg.eu> [] [] meetings_and_conferencesworkshops_and_courses [] beacon
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